Experiment: Ying_all64 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS05640 and ABIE41_RS05645 are separated by 17 nucleotides ABIE41_RS05645 and ABIE41_RS05650 are separated by 264 nucleotides
ABIE41_RS05640: ABIE41_RS05640 - heme biosynthesis HemY N-terminal domain-containing protein, at 1,157,617 to 1,159,365
_RS05640
ABIE41_RS05645: ABIE41_RS05645 - uroporphyrinogen-III synthase, at 1,159,383 to 1,161,467
_RS05645
ABIE41_RS05650: ABIE41_RS05650 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 1,161,732 to 1,162,802
_RS05650
Position (kb) 1159
1160
1161
1162 Strain fitness (log2 ratio) -2
-1
0
1 at 1159.697 kb on + strand, within ABIE41_RS05645 at 1159.697 kb on + strand, within ABIE41_RS05645 at 1159.697 kb on + strand, within ABIE41_RS05645 at 1159.697 kb on + strand, within ABIE41_RS05645 at 1159.697 kb on + strand, within ABIE41_RS05645 at 1159.698 kb on - strand, within ABIE41_RS05645 at 1159.698 kb on - strand, within ABIE41_RS05645 at 1159.698 kb on - strand, within ABIE41_RS05645 at 1159.698 kb on - strand, within ABIE41_RS05645 at 1159.698 kb on - strand, within ABIE41_RS05645 at 1160.735 kb on + strand, within ABIE41_RS05645 at 1160.736 kb on - strand, within ABIE41_RS05645 at 1160.736 kb on - strand, within ABIE41_RS05645 at 1160.736 kb on - strand, within ABIE41_RS05645 at 1160.736 kb on - strand, within ABIE41_RS05645 at 1161.467 kb on + strand at 1161.479 kb on + strand at 1161.653 kb on + strand at 1161.653 kb on + strand at 1161.653 kb on + strand at 1161.653 kb on + strand at 1161.653 kb on + strand at 1161.653 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 1 remove 1,159,697 + ABIE41_RS05645 0.15 +0.6 1,159,697 + ABIE41_RS05645 0.15 -2.0 1,159,697 + ABIE41_RS05645 0.15 -1.5 1,159,697 + ABIE41_RS05645 0.15 -0.3 1,159,697 + ABIE41_RS05645 0.15 +0.9 1,159,698 - ABIE41_RS05645 0.15 -0.3 1,159,698 - ABIE41_RS05645 0.15 -0.1 1,159,698 - ABIE41_RS05645 0.15 -0.1 1,159,698 - ABIE41_RS05645 0.15 -1.5 1,159,698 - ABIE41_RS05645 0.15 -0.1 1,160,735 + ABIE41_RS05645 0.65 +0.2 1,160,736 - ABIE41_RS05645 0.65 +0.6 1,160,736 - ABIE41_RS05645 0.65 -0.3 1,160,736 - ABIE41_RS05645 0.65 +1.5 1,160,736 - ABIE41_RS05645 0.65 -1.6 1,161,467 + +0.6 1,161,479 + -0.5 1,161,653 + -0.4 1,161,653 + +0.0 1,161,653 + +0.2 1,161,653 + -0.1 1,161,653 + -0.3 1,161,653 + -2.1
Or see this region's nucleotide sequence