Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nleG5-1 and nleG6-2 are separated by 81 nucleotides nleG6-2 and nleG-3 are separated by 72 nucleotides nleG-3 and MCAODC_03485 are separated by 111 nucleotides MCAODC_03485 and MCAODC_03490 are separated by 1 nucleotides
MCAODC_03470: nleG5-1 - DUF1076 domain-containing protein, at 700,898 to 701,539
nleG5-1
MCAODC_03475: nleG6-2 - DUF1076 domain-containing protein, at 701,621 to 702,250
nleG6-2
MCAODC_03480: nleG-3 - T3SS effector NleG family protein, at 702,323 to 702,895
nleG-3
MCAODC_03485: MCAODC_03485 - phage tail protein, at 703,007 to 703,276
_03485
MCAODC_03490: MCAODC_03490 - phage tail protein, at 703,278 to 704,591
_03490
Position (kb) 702
703 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 701.446 kb on + strand, within nleG5-1 at 701.596 kb on - strand at 701.756 kb on - strand, within nleG6-2 at 702.057 kb on - strand, within nleG6-2 at 702.057 kb on - strand, within nleG6-2 at 702.057 kb on - strand, within nleG6-2 at 702.313 kb on - strand at 702.535 kb on + strand, within nleG-3 at 702.653 kb on + strand, within nleG-3 at 702.676 kb on + strand, within nleG-3 at 702.688 kb on + strand, within nleG-3 at 702.758 kb on - strand, within nleG-3 at 702.758 kb on - strand, within nleG-3 at 702.767 kb on - strand, within nleG-3 at 702.767 kb on - strand, within nleG-3 at 702.768 kb on + strand, within nleG-3 at 702.768 kb on + strand, within nleG-3 at 702.768 kb on + strand, within nleG-3 at 702.769 kb on - strand, within nleG-3 at 702.769 kb on - strand, within nleG-3 at 702.769 kb on - strand, within nleG-3 at 702.769 kb on - strand, within nleG-3 at 702.825 kb on - strand, within nleG-3 at 702.876 kb on + strand at 702.876 kb on + strand at 702.876 kb on + strand at 702.876 kb on + strand at 702.876 kb on + strand at 702.876 kb on + strand at 702.877 kb on - strand at 702.877 kb on - strand at 702.877 kb on - strand at 702.877 kb on - strand at 702.877 kb on - strand at 702.877 kb on - strand at 702.882 kb on - strand at 702.882 kb on - strand at 702.882 kb on - strand at 702.884 kb on + strand at 702.885 kb on - strand at 702.911 kb on + strand at 702.917 kb on + strand at 702.917 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 701,446 + nleG5-1 MCAODC_03470 0.85 -0.4 701,596 - -1.8 701,756 - nleG6-2 MCAODC_03475 0.21 -0.1 702,057 - nleG6-2 MCAODC_03475 0.69 +0.7 702,057 - nleG6-2 MCAODC_03475 0.69 -0.2 702,057 - nleG6-2 MCAODC_03475 0.69 +0.0 702,313 - +0.6 702,535 + nleG-3 MCAODC_03480 0.37 +0.2 702,653 + nleG-3 MCAODC_03480 0.58 +2.4 702,676 + nleG-3 MCAODC_03480 0.62 -1.2 702,688 + nleG-3 MCAODC_03480 0.64 +1.7 702,758 - nleG-3 MCAODC_03480 0.76 -0.4 702,758 - nleG-3 MCAODC_03480 0.76 +3.1 702,767 - nleG-3 MCAODC_03480 0.77 -1.5 702,767 - nleG-3 MCAODC_03480 0.77 -0.4 702,768 + nleG-3 MCAODC_03480 0.78 +1.8 702,768 + nleG-3 MCAODC_03480 0.78 +1.0 702,768 + nleG-3 MCAODC_03480 0.78 +3.0 702,769 - nleG-3 MCAODC_03480 0.78 +0.7 702,769 - nleG-3 MCAODC_03480 0.78 -1.1 702,769 - nleG-3 MCAODC_03480 0.78 +1.5 702,769 - nleG-3 MCAODC_03480 0.78 +0.1 702,825 - nleG-3 MCAODC_03480 0.88 +0.6 702,876 + +1.0 702,876 + +0.7 702,876 + +1.8 702,876 + -0.1 702,876 + -0.7 702,876 + -0.7 702,877 - -1.4 702,877 - -0.5 702,877 - -0.8 702,877 - +0.6 702,877 - -1.7 702,877 - +1.2 702,882 - +0.5 702,882 - +0.9 702,882 - -0.8 702,884 + -0.6 702,885 - +0.2 702,911 + +1.6 702,917 + -0.6 702,917 + -0.4
Or see this region's nucleotide sequence