Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_24515 and MCAODC_24525 are separated by 573 nucleotides MCAODC_24525 and MCAODC_24530 overlap by 4 nucleotides MCAODC_24530 and MCAODC_24535 are separated by 93 nucleotides
MCAODC_24515: MCAODC_24515 - hypothetical protein, at 1,614,422 to 1,614,607
_24515
MCAODC_24525: MCAODC_24525 - cell division inhibition protein DicB, at 1,615,181 to 1,615,369
_24525
MCAODC_24530: MCAODC_24530 - DUF1482 domain-containing protein, at 1,615,366 to 1,615,557
_24530
MCAODC_24535: MCAODC_24535 - exonuclease, at 1,615,651 to 1,618,122
_24535
Position (kb)
1615
1616 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1614.382 kb on + strand at 1614.398 kb on + strand at 1614.416 kb on - strand at 1614.416 kb on - strand at 1614.469 kb on - strand, within MCAODC_24515 at 1614.491 kb on - strand, within MCAODC_24515 at 1614.536 kb on - strand, within MCAODC_24515 at 1614.611 kb on - strand at 1614.716 kb on + strand at 1614.846 kb on + strand at 1614.846 kb on + strand at 1614.846 kb on + strand at 1614.846 kb on + strand at 1614.942 kb on + strand at 1614.972 kb on + strand at 1614.979 kb on + strand at 1615.053 kb on + strand at 1615.191 kb on + strand at 1615.199 kb on - strand at 1615.359 kb on - strand at 1615.360 kb on + strand at 1615.527 kb on + strand, within MCAODC_24530 at 1615.531 kb on - strand, within MCAODC_24530
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 1,614,382 + +0.7 1,614,398 + -0.7 1,614,416 - -1.1 1,614,416 - +0.2 1,614,469 - MCAODC_24515 0.25 -1.1 1,614,491 - MCAODC_24515 0.37 +3.5 1,614,536 - MCAODC_24515 0.61 +0.5 1,614,611 - -0.6 1,614,716 + -0.8 1,614,846 + -0.3 1,614,846 + +0.4 1,614,846 + -0.5 1,614,846 + +0.6 1,614,942 + -0.0 1,614,972 + +0.4 1,614,979 + +1.6 1,615,053 + +1.4 1,615,191 + +0.6 1,615,199 - -1.3 1,615,359 - +1.3 1,615,360 + -0.8 1,615,527 + MCAODC_24530 0.84 -0.7 1,615,531 - MCAODC_24530 0.86 -1.4
Or see this region's nucleotide sequence