Strain Fitness in Escherichia coli ECRC101 around MCAODC_24530

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_24515 and MCAODC_24525 are separated by 573 nucleotidesMCAODC_24525 and MCAODC_24530 overlap by 4 nucleotidesMCAODC_24530 and MCAODC_24535 are separated by 93 nucleotides MCAODC_24515: MCAODC_24515 - hypothetical protein, at 1,614,422 to 1,614,607 _24515 MCAODC_24525: MCAODC_24525 - cell division inhibition protein DicB, at 1,615,181 to 1,615,369 _24525 MCAODC_24530: MCAODC_24530 - DUF1482 domain-containing protein, at 1,615,366 to 1,615,557 _24530 MCAODC_24535: MCAODC_24535 - exonuclease, at 1,615,651 to 1,618,122 _24535 Position (kb) 1615 1616Strain fitness (log2 ratio) -1 0 1 2 3at 1614.382 kb on + strandat 1614.398 kb on + strandat 1614.416 kb on - strandat 1614.416 kb on - strandat 1614.469 kb on - strand, within MCAODC_24515at 1614.491 kb on - strand, within MCAODC_24515at 1614.536 kb on - strand, within MCAODC_24515at 1614.611 kb on - strandat 1614.716 kb on + strandat 1614.846 kb on + strandat 1614.846 kb on + strandat 1614.846 kb on + strandat 1614.846 kb on + strandat 1614.942 kb on + strandat 1614.972 kb on + strandat 1614.979 kb on + strandat 1615.053 kb on + strandat 1615.191 kb on + strandat 1615.199 kb on - strandat 1615.359 kb on - strandat 1615.360 kb on + strandat 1615.527 kb on + strand, within MCAODC_24530at 1615.531 kb on - strand, within MCAODC_24530

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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1,614,382 + +0.7
1,614,398 + -0.7
1,614,416 - -1.1
1,614,416 - +0.2
1,614,469 - MCAODC_24515 0.25 -1.1
1,614,491 - MCAODC_24515 0.37 +3.5
1,614,536 - MCAODC_24515 0.61 +0.5
1,614,611 - -0.6
1,614,716 + -0.8
1,614,846 + -0.3
1,614,846 + +0.4
1,614,846 + -0.5
1,614,846 + +0.6
1,614,942 + -0.0
1,614,972 + +0.4
1,614,979 + +1.6
1,615,053 + +1.4
1,615,191 + +0.6
1,615,199 - -1.3
1,615,359 - +1.3
1,615,360 + -0.8
1,615,527 + MCAODC_24530 0.84 -0.7
1,615,531 - MCAODC_24530 0.86 -1.4

Or see this region's nucleotide sequence