Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_17170 and MCAODC_17175 are separated by 33 nucleotides MCAODC_17175 and MCAODC_17180 overlap by 8 nucleotides MCAODC_17180 and MCAODC_17185 are separated by 68 nucleotides MCAODC_17185 and MCAODC_17190 overlap by 17 nucleotides
MCAODC_17170: MCAODC_17170 - DUF1627 domain-containing protein, at 327,116 to 327,832
_17170
MCAODC_17175: MCAODC_17175 - replication protein, at 327,866 to 328,327
_17175
MCAODC_17180: MCAODC_17180 - phage replisome organizer, at 328,320 to 329,363
_17180
MCAODC_17185: MCAODC_17185 - Rha family transcriptional regulator, at 329,432 to 329,857
_17185
MCAODC_17190: MCAODC_17190 - Antirepressor protein, at 329,841 to 330,083
_17190
Position (kb) 328
329
330 Strain fitness (log2 ratio) -2
-1
0
1 at 327.554 kb on - strand, within MCAODC_17170 at 327.898 kb on - strand at 328.127 kb on - strand, within MCAODC_17175 at 328.127 kb on - strand, within MCAODC_17175 at 328.127 kb on - strand, within MCAODC_17175 at 328.746 kb on - strand, within MCAODC_17180 at 328.890 kb on - strand, within MCAODC_17180 at 328.890 kb on - strand, within MCAODC_17180 at 328.896 kb on - strand, within MCAODC_17180 at 328.964 kb on + strand, within MCAODC_17180 at 328.965 kb on - strand, within MCAODC_17180 at 329.257 kb on + strand, within MCAODC_17180 at 329.258 kb on - strand, within MCAODC_17180 at 329.258 kb on - strand, within MCAODC_17180 at 329.730 kb on + strand, within MCAODC_17185 at 329.763 kb on + strand, within MCAODC_17185 at 329.873 kb on + strand, within MCAODC_17190 at 329.923 kb on - strand, within MCAODC_17190 at 329.929 kb on + strand, within MCAODC_17190 at 329.930 kb on - strand, within MCAODC_17190 at 329.961 kb on + strand, within MCAODC_17190 at 329.962 kb on - strand, within MCAODC_17190 at 330.066 kb on + strand at 330.067 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 327,554 - MCAODC_17170 0.61 -0.7 327,898 - -1.6 328,127 - MCAODC_17175 0.56 -1.0 328,127 - MCAODC_17175 0.56 -2.0 328,127 - MCAODC_17175 0.56 -2.3 328,746 - MCAODC_17180 0.41 -1.9 328,890 - MCAODC_17180 0.55 -2.0 328,890 - MCAODC_17180 0.55 -0.2 328,896 - MCAODC_17180 0.55 -2.2 328,964 + MCAODC_17180 0.62 -1.0 328,965 - MCAODC_17180 0.62 -1.5 329,257 + MCAODC_17180 0.90 +0.1 329,258 - MCAODC_17180 0.90 -0.4 329,258 - MCAODC_17180 0.90 -2.4 329,730 + MCAODC_17185 0.70 -1.4 329,763 + MCAODC_17185 0.78 +0.6 329,873 + MCAODC_17190 0.13 -1.4 329,923 - MCAODC_17190 0.34 -0.1 329,929 + MCAODC_17190 0.36 -1.2 329,930 - MCAODC_17190 0.37 +0.9 329,961 + MCAODC_17190 0.49 -0.3 329,962 - MCAODC_17190 0.50 -0.7 330,066 + +0.3 330,067 - -2.0
Or see this region's nucleotide sequence