Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_15145 and repA2 are separated by 239 nucleotides repA2 and tap are separated by 235 nucleotides tap and repA overlap by 8 nucleotides repA and putA1 are separated by 918 nucleotides
MCAODC_15145: MCAODC_15145 - W0003, at 12,351 to 12,689
_15145
MCAODC_15150: repA2 - Replication regulatory protein repA2, at 12,929 to 13,183
repA2
MCAODC_15160: tap - RepA leader peptide Tap, at 13,419 to 13,493
tap
MCAODC_15165: repA - incFII family plasmid replication initiator RepA, at 13,486 to 14,343
repA
MCAODC_15170: putA1 - CopG family transcriptional regulator, at 15,262 to 15,540
putA1
Position (kb) 13
14
15 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 12.494 kb on - strand, within MCAODC_15145 at 12.510 kb on + strand, within MCAODC_15145 at 12.511 kb on - strand, within MCAODC_15145 at 12.511 kb on - strand, within MCAODC_15145 at 12.585 kb on - strand, within MCAODC_15145 at 12.585 kb on - strand, within MCAODC_15145 at 12.647 kb on + strand, within MCAODC_15145 at 12.647 kb on + strand, within MCAODC_15145 at 12.647 kb on + strand, within MCAODC_15145 at 12.647 kb on + strand, within MCAODC_15145 at 12.647 kb on + strand, within MCAODC_15145 at 12.648 kb on - strand, within MCAODC_15145 at 12.683 kb on + strand at 12.684 kb on - strand at 12.684 kb on - strand at 12.684 kb on - strand at 12.777 kb on - strand at 12.777 kb on - strand at 12.779 kb on + strand at 12.780 kb on - strand at 12.780 kb on - strand at 12.791 kb on + strand at 12.792 kb on - strand at 12.792 kb on - strand at 12.801 kb on + strand at 12.802 kb on - strand at 12.811 kb on + strand at 12.882 kb on + strand at 12.883 kb on - strand at 12.883 kb on - strand at 12.885 kb on + strand at 12.885 kb on + strand at 12.910 kb on + strand at 12.910 kb on + strand at 12.910 kb on + strand at 12.910 kb on + strand at 12.911 kb on - strand at 12.915 kb on - strand at 12.980 kb on + strand, within repA2 at 12.980 kb on + strand, within repA2 at 12.981 kb on - strand, within repA2 at 12.981 kb on - strand, within repA2 at 12.981 kb on - strand, within repA2 at 12.981 kb on - strand, within repA2 at 13.023 kb on + strand, within repA2 at 13.036 kb on + strand, within repA2 at 13.037 kb on - strand, within repA2 at 13.059 kb on + strand, within repA2 at 13.059 kb on + strand, within repA2 at 13.059 kb on + strand, within repA2 at 13.059 kb on + strand, within repA2 at 13.059 kb on + strand, within repA2 at 13.082 kb on + strand, within repA2 at 13.082 kb on + strand, within repA2 at 13.082 kb on + strand, within repA2 at 13.082 kb on + strand, within repA2 at 13.082 kb on + strand, within repA2 at 13.082 kb on + strand, within repA2 at 13.083 kb on - strand, within repA2 at 13.083 kb on - strand, within repA2 at 13.084 kb on + strand, within repA2 at 13.084 kb on + strand, within repA2 at 13.084 kb on + strand, within repA2 at 13.084 kb on + strand, within repA2 at 13.084 kb on + strand, within repA2 at 13.085 kb on - strand, within repA2 at 13.153 kb on - strand, within repA2 at 13.223 kb on + strand at 13.410 kb on + strand at 13.413 kb on - strand at 13.416 kb on + strand at 13.416 kb on + strand at 13.416 kb on + strand at 13.417 kb on - strand at 13.417 kb on - strand at 13.471 kb on + strand, within tap at 13.472 kb on - strand, within tap at 13.472 kb on - strand, within tap at 13.472 kb on - strand, within tap at 13.520 kb on + strand at 13.879 kb on + strand, within repA at 13.913 kb on - strand, within repA at 14.135 kb on + strand, within repA at 14.557 kb on - strand at 14.574 kb on - strand at 14.609 kb on - strand at 14.627 kb on + strand at 14.627 kb on + strand at 14.628 kb on - strand at 14.629 kb on + strand at 14.638 kb on + strand at 14.648 kb on - strand at 14.648 kb on - strand at 14.704 kb on + strand at 14.704 kb on + strand at 14.704 kb on + strand at 14.704 kb on + strand at 14.704 kb on + strand at 14.704 kb on + strand at 14.704 kb on + strand at 14.704 kb on + strand at 14.704 kb on + strand at 14.704 kb on + strand at 14.705 kb on - strand at 14.705 kb on - strand at 14.705 kb on - strand at 14.826 kb on + strand at 14.941 kb on + strand at 14.983 kb on + strand at 15.034 kb on + strand at 15.138 kb on + strand at 15.139 kb on - strand at 15.149 kb on + strand at 15.149 kb on + strand at 15.149 kb on + strand at 15.149 kb on + strand at 15.149 kb on + strand at 15.149 kb on + strand at 15.149 kb on + strand at 15.149 kb on + strand at 15.149 kb on + strand at 15.150 kb on - strand at 15.150 kb on - strand at 15.150 kb on - strand at 15.150 kb on - strand at 15.150 kb on - strand at 15.155 kb on + strand at 15.164 kb on + strand at 15.174 kb on + strand at 15.174 kb on + strand at 15.174 kb on + strand at 15.174 kb on + strand at 15.174 kb on + strand at 15.175 kb on - strand at 15.175 kb on - strand at 15.175 kb on - strand at 15.175 kb on - strand at 15.175 kb on - strand at 15.175 kb on - strand at 15.193 kb on + strand at 15.194 kb on - strand at 15.194 kb on - strand at 15.218 kb on - strand at 15.315 kb on - strand, within putA1 at 15.315 kb on - strand, within putA1 at 15.319 kb on - strand, within putA1
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 12,494 - MCAODC_15145 0.42 -1.5 12,510 + MCAODC_15145 0.47 -1.0 12,511 - MCAODC_15145 0.47 +0.6 12,511 - MCAODC_15145 0.47 -0.2 12,585 - MCAODC_15145 0.69 -0.6 12,585 - MCAODC_15145 0.69 -0.1 12,647 + MCAODC_15145 0.87 +1.4 12,647 + MCAODC_15145 0.87 +0.5 12,647 + MCAODC_15145 0.87 +0.2 12,647 + MCAODC_15145 0.87 +0.3 12,647 + MCAODC_15145 0.87 -0.3 12,648 - MCAODC_15145 0.88 +0.2 12,683 + -1.6 12,684 - -0.7 12,684 - -0.4 12,684 - +0.4 12,777 - +0.5 12,777 - +0.8 12,779 + +1.0 12,780 - -0.4 12,780 - +2.1 12,791 + +0.8 12,792 - +0.3 12,792 - +0.5 12,801 + +0.7 12,802 - +1.0 12,811 + +0.8 12,882 + -0.1 12,883 - -0.3 12,883 - -1.4 12,885 + -0.8 12,885 + -0.3 12,910 + -0.5 12,910 + -0.0 12,910 + +1.5 12,910 + +0.4 12,911 - -0.8 12,915 - -3.2 12,980 + repA2 MCAODC_15150 0.20 +2.4 12,980 + repA2 MCAODC_15150 0.20 -4.1 12,981 - repA2 MCAODC_15150 0.20 -1.9 12,981 - repA2 MCAODC_15150 0.20 -1.0 12,981 - repA2 MCAODC_15150 0.20 -0.9 12,981 - repA2 MCAODC_15150 0.20 +0.1 13,023 + repA2 MCAODC_15150 0.37 -0.2 13,036 + repA2 MCAODC_15150 0.42 -2.2 13,037 - repA2 MCAODC_15150 0.42 -0.2 13,059 + repA2 MCAODC_15150 0.51 -3.1 13,059 + repA2 MCAODC_15150 0.51 -2.4 13,059 + repA2 MCAODC_15150 0.51 -1.8 13,059 + repA2 MCAODC_15150 0.51 -1.4 13,059 + repA2 MCAODC_15150 0.51 -0.9 13,082 + repA2 MCAODC_15150 0.60 -3.6 13,082 + repA2 MCAODC_15150 0.60 -3.3 13,082 + repA2 MCAODC_15150 0.60 -1.8 13,082 + repA2 MCAODC_15150 0.60 -1.4 13,082 + repA2 MCAODC_15150 0.60 -2.3 13,082 + repA2 MCAODC_15150 0.60 -1.8 13,083 - repA2 MCAODC_15150 0.60 -1.7 13,083 - repA2 MCAODC_15150 0.60 -3.3 13,084 + repA2 MCAODC_15150 0.61 -4.9 13,084 + repA2 MCAODC_15150 0.61 -1.9 13,084 + repA2 MCAODC_15150 0.61 -1.8 13,084 + repA2 MCAODC_15150 0.61 -4.3 13,084 + repA2 MCAODC_15150 0.61 -4.6 13,085 - repA2 MCAODC_15150 0.61 -1.1 13,153 - repA2 MCAODC_15150 0.88 -0.3 13,223 + -2.2 13,410 + -0.1 13,413 - -0.2 13,416 + +1.3 13,416 + -0.3 13,416 + -0.7 13,417 - +3.4 13,417 - +0.1 13,471 + tap MCAODC_15160 0.69 -0.0 13,472 - tap MCAODC_15160 0.71 +1.4 13,472 - tap MCAODC_15160 0.71 +0.6 13,472 - tap MCAODC_15160 0.71 +1.0 13,520 + +1.1 13,879 + repA MCAODC_15165 0.46 -0.4 13,913 - repA MCAODC_15165 0.50 -2.7 14,135 + repA MCAODC_15165 0.76 -0.7 14,557 - -0.2 14,574 - +1.7 14,609 - +0.7 14,627 + -0.4 14,627 + +1.4 14,628 - +0.6 14,629 + -0.0 14,638 + +1.1 14,648 - -0.3 14,648 - +0.4 14,704 + +0.5 14,704 + -0.9 14,704 + -0.8 14,704 + +0.4 14,704 + -0.7 14,704 + +2.4 14,704 + -2.2 14,704 + -1.1 14,704 + +0.1 14,704 + -0.8 14,705 - +0.6 14,705 - -1.7 14,705 - +1.1 14,826 + +0.0 14,941 + -0.9 14,983 + -0.1 15,034 + +1.4 15,138 + -0.8 15,139 - +0.0 15,149 + -0.9 15,149 + +0.0 15,149 + -0.5 15,149 + -1.5 15,149 + +0.4 15,149 + -0.5 15,149 + -0.8 15,149 + +0.3 15,149 + +0.7 15,150 - -0.2 15,150 - +1.1 15,150 - -0.3 15,150 - -0.6 15,150 - -0.7 15,155 + -0.2 15,164 + -0.9 15,174 + -1.2 15,174 + +0.8 15,174 + -1.5 15,174 + +0.5 15,174 + -1.2 15,175 - +0.6 15,175 - -0.7 15,175 - -0.6 15,175 - +1.4 15,175 - -1.1 15,175 - +0.3 15,193 + -1.5 15,194 - -0.8 15,194 - -0.6 15,218 - -1.0 15,315 - putA1 MCAODC_15170 0.19 -0.9 15,315 - putA1 MCAODC_15170 0.19 +1.1 15,319 - putA1 MCAODC_15170 0.20 +2.1
Or see this region's nucleotide sequence