Strain Fitness in Escherichia coli ECRC101 around MCAODC_13150

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_13135 and MCAODC_13140 overlap by 4 nucleotidesMCAODC_13140 and MCAODC_13145 are separated by 98 nucleotidesMCAODC_13145 and MCAODC_13150 are separated by 76 nucleotidesMCAODC_13150 and MCAODC_13155 overlap by 28 nucleotidesMCAODC_13155 and exoD overlap by 4 nucleotidesexoD and bet overlap by 4 nucleotides MCAODC_13135: MCAODC_13135 - Ead/Ea22-like protein, at 2,598,392 to 2,599,339 _13135 MCAODC_13140: MCAODC_13140 - conjugal transfer protein TraR, at 2,599,336 to 2,599,557 _13140 MCAODC_13145: MCAODC_13145 - Cell division protein ZapA, at 2,599,656 to 2,599,871 _13145 MCAODC_13150: MCAODC_13150 - DUF1382 domain-containing protein, at 2,599,948 to 2,600,139 _13150 MCAODC_13155: MCAODC_13155 - cruciferin, at 2,600,112 to 2,600,294 _13155 MCAODC_13160: exoD - Putative uncharacterized protein ExoD, at 2,600,291 to 2,600,971 exoD MCAODC_13165: bet - phage recombination protein Bet, at 2,600,968 to 2,601,753 bet Position (kb) 2599 2600 2601Strain fitness (log2 ratio) -2 -1 0 1at 2598.952 kb on - strand, within MCAODC_13135at 2598.952 kb on - strand, within MCAODC_13135at 2599.124 kb on - strand, within MCAODC_13135at 2599.171 kb on + strand, within MCAODC_13135at 2599.171 kb on + strand, within MCAODC_13135at 2599.238 kb on + strand, within MCAODC_13135at 2599.265 kb on - strandat 2599.265 kb on - strandat 2599.265 kb on - strandat 2599.265 kb on - strandat 2599.265 kb on - strandat 2599.702 kb on - strand, within MCAODC_13145at 2599.702 kb on - strand, within MCAODC_13145at 2599.910 kb on + strandat 2600.026 kb on - strand, within MCAODC_13150at 2600.139 kb on + strandat 2600.160 kb on + strand, within MCAODC_13155at 2600.415 kb on + strand, within exoDat 2600.415 kb on + strand, within exoDat 2600.415 kb on + strand, within exoDat 2600.415 kb on + strand, within exoDat 2600.493 kb on + strand, within exoDat 2600.493 kb on + strand, within exoDat 2600.633 kb on - strand, within exoDat 2600.633 kb on - strand, within exoDat 2600.639 kb on - strand, within exoDat 2600.657 kb on - strand, within exoDat 2600.722 kb on - strand, within exoDat 2600.753 kb on - strand, within exoDat 2600.803 kb on - strand, within exoD

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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2,598,952 - MCAODC_13135 0.59 +0.5
2,598,952 - MCAODC_13135 0.59 -1.2
2,599,124 - MCAODC_13135 0.77 -0.4
2,599,171 + MCAODC_13135 0.82 +0.2
2,599,171 + MCAODC_13135 0.82 +0.5
2,599,238 + MCAODC_13135 0.89 -0.6
2,599,265 - -0.4
2,599,265 - -0.4
2,599,265 - +0.4
2,599,265 - -0.7
2,599,265 - -0.2
2,599,702 - MCAODC_13145 0.21 -2.6
2,599,702 - MCAODC_13145 0.21 +1.6
2,599,910 + -0.4
2,600,026 - MCAODC_13150 0.41 -1.0
2,600,139 + +0.6
2,600,160 + MCAODC_13155 0.26 -0.4
2,600,415 + exoD MCAODC_13160 0.18 +0.6
2,600,415 + exoD MCAODC_13160 0.18 +0.4
2,600,415 + exoD MCAODC_13160 0.18 -0.2
2,600,415 + exoD MCAODC_13160 0.18 -0.3
2,600,493 + exoD MCAODC_13160 0.30 -1.0
2,600,493 + exoD MCAODC_13160 0.30 -0.9
2,600,633 - exoD MCAODC_13160 0.50 -2.0
2,600,633 - exoD MCAODC_13160 0.50 +0.8
2,600,639 - exoD MCAODC_13160 0.51 -0.8
2,600,657 - exoD MCAODC_13160 0.54 +0.9
2,600,722 - exoD MCAODC_13160 0.63 +1.2
2,600,753 - exoD MCAODC_13160 0.68 +0.1
2,600,803 - exoD MCAODC_13160 0.75 +0.4

Or see this region's nucleotide sequence