Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisS and yfgM are separated by 17 nucleotides yfgM and bamB are separated by 10 nucleotides bamB and der are separated by 117 nucleotides
MCAODC_12260: hisS - histidine--tRNA ligase, at 2,428,249 to 2,429,523
hisS
MCAODC_12265: yfgM - ancillary SecYEG translocon subunit YfgM, at 2,429,541 to 2,430,161
yfgM
MCAODC_12270: bamB - outer membrane protein assembly factor BamB, at 2,430,172 to 2,431,350
bamB
MCAODC_12275: der - ribosome biogenesis GTPase Der, at 2,431,468 to 2,432,940
der
Position (kb)
2430
2431
2432 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2429.521 kb on + strand at 2429.550 kb on + strand at 2429.796 kb on + strand, within yfgM at 2429.796 kb on + strand, within yfgM at 2429.796 kb on + strand, within yfgM at 2429.796 kb on + strand, within yfgM at 2429.796 kb on + strand, within yfgM at 2429.796 kb on + strand, within yfgM at 2429.796 kb on + strand, within yfgM at 2429.987 kb on + strand, within yfgM at 2430.107 kb on + strand at 2430.538 kb on + strand, within bamB at 2430.538 kb on + strand, within bamB at 2430.538 kb on + strand, within bamB at 2430.606 kb on + strand, within bamB at 2430.606 kb on + strand, within bamB at 2430.606 kb on + strand, within bamB at 2430.864 kb on + strand, within bamB at 2430.864 kb on + strand, within bamB at 2430.864 kb on + strand, within bamB at 2430.958 kb on + strand, within bamB at 2430.959 kb on - strand, within bamB at 2430.960 kb on + strand, within bamB at 2430.960 kb on + strand, within bamB at 2430.960 kb on + strand, within bamB at 2431.002 kb on + strand, within bamB at 2431.060 kb on + strand, within bamB at 2431.060 kb on + strand, within bamB at 2431.168 kb on + strand, within bamB at 2431.168 kb on + strand, within bamB at 2431.170 kb on + strand, within bamB at 2431.170 kb on + strand, within bamB at 2431.260 kb on + strand at 2431.338 kb on + strand at 2431.338 kb on + strand at 2431.341 kb on + strand at 2431.341 kb on + strand at 2431.425 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 2,429,521 + +1.5 2,429,550 + +1.4 2,429,796 + yfgM MCAODC_12265 0.41 -0.3 2,429,796 + yfgM MCAODC_12265 0.41 +0.5 2,429,796 + yfgM MCAODC_12265 0.41 -0.8 2,429,796 + yfgM MCAODC_12265 0.41 -0.2 2,429,796 + yfgM MCAODC_12265 0.41 -0.1 2,429,796 + yfgM MCAODC_12265 0.41 -2.8 2,429,796 + yfgM MCAODC_12265 0.41 +1.4 2,429,987 + yfgM MCAODC_12265 0.72 +1.0 2,430,107 + -1.3 2,430,538 + bamB MCAODC_12270 0.31 -1.8 2,430,538 + bamB MCAODC_12270 0.31 -0.9 2,430,538 + bamB MCAODC_12270 0.31 -1.8 2,430,606 + bamB MCAODC_12270 0.37 -1.0 2,430,606 + bamB MCAODC_12270 0.37 -2.4 2,430,606 + bamB MCAODC_12270 0.37 +0.0 2,430,864 + bamB MCAODC_12270 0.59 -1.2 2,430,864 + bamB MCAODC_12270 0.59 -0.4 2,430,864 + bamB MCAODC_12270 0.59 -1.1 2,430,958 + bamB MCAODC_12270 0.67 +2.0 2,430,959 - bamB MCAODC_12270 0.67 -1.5 2,430,960 + bamB MCAODC_12270 0.67 -1.5 2,430,960 + bamB MCAODC_12270 0.67 +0.6 2,430,960 + bamB MCAODC_12270 0.67 +0.8 2,431,002 + bamB MCAODC_12270 0.70 -1.0 2,431,060 + bamB MCAODC_12270 0.75 -0.9 2,431,060 + bamB MCAODC_12270 0.75 -1.2 2,431,168 + bamB MCAODC_12270 0.84 -0.1 2,431,168 + bamB MCAODC_12270 0.84 +0.6 2,431,170 + bamB MCAODC_12270 0.85 -1.3 2,431,170 + bamB MCAODC_12270 0.85 -0.1 2,431,260 + -0.7 2,431,338 + +0.7 2,431,338 + -0.1 2,431,341 + +2.6 2,431,341 + +0.6 2,431,425 + -0.1
Or see this region's nucleotide sequence