Experiment: WM_TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_10400 and MCAODC_10405 are separated by 429 nucleotides MCAODC_10405 and yqeL overlap by 25 nucleotides yqeL and yqeJ are separated by 32 nucleotides yqeJ and yqeI overlap by 4 nucleotides
MCAODC_10400: MCAODC_10400 - Putative uncharacterized protein YgeF, at 2,071,114 to 2,071,605
_10400
MCAODC_10405: MCAODC_10405 - Uncharacterized protein YqeK, at 2,072,035 to 2,072,460
_10405
MCAODC_10410: yqeL - Uncharacterized protein YqeL, at 2,072,436 to 2,072,576
yqeL
MCAODC_10415: yqeJ - Uncharacterized protein YqeJ, at 2,072,609 to 2,073,088
yqeJ
MCAODC_10420: yqeI - Uncharacterized protein YqeI, at 2,073,085 to 2,073,894
yqeI
Position (kb)
2072
2073 Strain fitness (log2 ratio)
-2
-1
0
1 at 2071.322 kb on - strand, within MCAODC_10400 at 2071.733 kb on - strand at 2071.736 kb on + strand at 2071.758 kb on - strand at 2071.831 kb on + strand at 2071.831 kb on + strand at 2071.855 kb on - strand at 2071.938 kb on - strand at 2072.074 kb on - strand at 2072.245 kb on + strand, within MCAODC_10405 at 2072.304 kb on + strand, within MCAODC_10405 at 2072.412 kb on + strand, within MCAODC_10405 at 2072.762 kb on - strand, within yqeJ at 2073.298 kb on + strand, within yqeI
Per-strain Table
Position Strand Gene LocusTag Fraction WM_TP9 remove 2,071,322 - MCAODC_10400 0.42 +0.3 2,071,733 - +0.1 2,071,736 + +0.5 2,071,758 - -1.4 2,071,831 + +0.1 2,071,831 + -0.8 2,071,855 - -0.3 2,071,938 - -0.8 2,072,074 - -0.7 2,072,245 + MCAODC_10405 0.49 +1.5 2,072,304 + MCAODC_10405 0.63 -2.1 2,072,412 + MCAODC_10405 0.88 -2.0 2,072,762 - yqeJ MCAODC_10415 0.32 +0.3 2,073,298 + yqeI MCAODC_10420 0.26 +0.1
Or see this region's nucleotide sequence