Strain Fitness in Escherichia coli ECRC101 around MCAODC_10405

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_10400 and MCAODC_10405 are separated by 429 nucleotidesMCAODC_10405 and yqeL overlap by 25 nucleotidesyqeL and yqeJ are separated by 32 nucleotidesyqeJ and yqeI overlap by 4 nucleotides MCAODC_10400: MCAODC_10400 - Putative uncharacterized protein YgeF, at 2,071,114 to 2,071,605 _10400 MCAODC_10405: MCAODC_10405 - Uncharacterized protein YqeK, at 2,072,035 to 2,072,460 _10405 MCAODC_10410: yqeL - Uncharacterized protein YqeL, at 2,072,436 to 2,072,576 yqeL MCAODC_10415: yqeJ - Uncharacterized protein YqeJ, at 2,072,609 to 2,073,088 yqeJ MCAODC_10420: yqeI - Uncharacterized protein YqeI, at 2,073,085 to 2,073,894 yqeI Position (kb) 2072 2073Strain fitness (log2 ratio) -2 -1 0 1at 2071.322 kb on - strand, within MCAODC_10400at 2071.733 kb on - strandat 2071.736 kb on + strandat 2071.758 kb on - strandat 2071.831 kb on + strandat 2071.831 kb on + strandat 2071.855 kb on - strandat 2071.938 kb on - strandat 2072.074 kb on - strandat 2072.245 kb on + strand, within MCAODC_10405at 2072.304 kb on + strand, within MCAODC_10405at 2072.412 kb on + strand, within MCAODC_10405at 2072.762 kb on - strand, within yqeJat 2073.298 kb on + strand, within yqeI

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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2,071,322 - MCAODC_10400 0.42 +0.3
2,071,733 - +0.1
2,071,736 + +0.5
2,071,758 - -1.4
2,071,831 + +0.1
2,071,831 + -0.8
2,071,855 - -0.3
2,071,938 - -0.8
2,072,074 - -0.7
2,072,245 + MCAODC_10405 0.49 +1.5
2,072,304 + MCAODC_10405 0.63 -2.1
2,072,412 + MCAODC_10405 0.88 -2.0
2,072,762 - yqeJ MCAODC_10415 0.32 +0.3
2,073,298 + yqeI MCAODC_10420 0.26 +0.1

Or see this region's nucleotide sequence