Strain Fitness in Pseudomonas sp. RS175 around PFR28_02826

Experiment: 2-Keto-D-gluconic hemicalcium salt (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Keto-D-gluconic hemicalcium salt (C) 10 mM
3,299,559	+				-0.1
3,299,559	+				-0.6
3,299,666	+		PFR28_02825	0.15	+0.3
3,299,667	-		PFR28_02825	0.15	+0.7
3,299,667	-		PFR28_02825	0.15	+0.5
3,299,667	-		PFR28_02825	0.15	-0.0
3,299,696	+		PFR28_02825	0.18	-0.4
3,299,696	+		PFR28_02825	0.18	-1.7
3,299,697	-		PFR28_02825	0.18	-0.3
3,299,697	-		PFR28_02825	0.18	+0.5
3,299,697	-		PFR28_02825	0.18	+1.8
3,299,697	-		PFR28_02825	0.18	+0.4
3,299,697	-		PFR28_02825	0.18	-0.7
3,299,697	-		PFR28_02825	0.18	+1.6
3,299,737	+		PFR28_02825	0.23	-0.8
3,299,738	-		PFR28_02825	0.23	+0.2
3,299,738	-		PFR28_02825	0.23	+0.3
3,299,753	+		PFR28_02825	0.25	-1.0
3,299,754	-		PFR28_02825	0.25	-0.6
3,300,202	+		PFR28_02825	0.75	-0.8
3,300,202	+		PFR28_02825	0.75	+0.1
3,300,202	+		PFR28_02825	0.75	+0.6
3,300,203	-		PFR28_02825	0.75	-0.6
3,300,203	-		PFR28_02825	0.75	+0.8
3,300,216	-		PFR28_02825	0.77	-0.2
3,300,291	-		PFR28_02825	0.85	+0.7
3,300,291	-		PFR28_02825	0.85	-0.5
3,300,305	+		PFR28_02825	0.87	-0.1
3,300,305	+		PFR28_02825	0.87	-0.0
3,300,323	+		PFR28_02825	0.89	+0.9
3,300,323	+		PFR28_02825	0.89	+0.4
3,300,323	+		PFR28_02825	0.89	+0.1
3,300,323	+		PFR28_02825	0.89	+1.3
3,300,323	+		PFR28_02825	0.89	+0.0
3,300,323	+		PFR28_02825	0.89	-0.2
3,300,324	-		PFR28_02825	0.89	+1.0
3,300,324	-		PFR28_02825	0.89	-1.4
3,300,324	-		PFR28_02825	0.89	-0.2
3,300,324	-		PFR28_02825	0.89	-0.4
3,300,324	-		PFR28_02825	0.89	+1.1
3,300,328	+		PFR28_02825	0.89	-1.6
3,300,328	+		PFR28_02825	0.89	+0.3
3,300,328	+		PFR28_02825	0.89	+1.8
3,300,328	+		PFR28_02825	0.89	+1.6
3,300,328	+		PFR28_02825	0.89	+0.2
3,300,329	-		PFR28_02825	0.89	+0.3
3,300,329	-		PFR28_02825	0.89	+1.5
3,300,329	-		PFR28_02825	0.89	-1.1
3,300,329	-		PFR28_02825	0.89	+0.4
3,300,329	-		PFR28_02825	0.89	-0.7
3,300,329	-		PFR28_02825	0.89	+0.3
3,300,329	-		PFR28_02825	0.89	+0.5
3,300,329	-		PFR28_02825	0.89	+0.5
3,300,329	-		PFR28_02825	0.89	-0.9
3,300,329	-		PFR28_02825	0.89	+0.2
3,300,330	+		PFR28_02825	0.89	+0.3
3,300,330	+		PFR28_02825	0.89	-0.5
3,300,330	+		PFR28_02825	0.89	-0.3
3,300,330	+		PFR28_02825	0.89	+0.3
3,300,330	+		PFR28_02825	0.89	-0.2
3,300,330	+		PFR28_02825	0.89	+1.1
3,300,330	+		PFR28_02825	0.89	+1.4
3,300,330	+		PFR28_02825	0.89	+0.0
3,300,330	+		PFR28_02825	0.89	+1.0
3,300,330	+		PFR28_02825	0.89	-2.0
3,300,330	+		PFR28_02825	0.89	+1.5
3,300,330	+		PFR28_02825	0.89	-0.3
3,300,330	+		PFR28_02825	0.89	+0.3
3,300,330	+		PFR28_02825	0.89	+0.5
3,300,331	-		PFR28_02825	0.90	+1.2
3,300,331	-		PFR28_02825	0.90	-0.3
3,300,331	-		PFR28_02825	0.90	-0.6
3,300,331	-		PFR28_02825	0.90	+1.0
3,300,383	+				+0.5
3,300,421	+				-1.5
3,300,421	+				+0.3
3,300,421	+				-1.3
3,300,421	+				-1.6
3,300,421	+				-0.1
3,300,421	+				-1.3
3,300,422	-				+0.1
3,300,422	-				+0.7
3,300,422	-				+0.1
3,300,422	-				+0.1
3,300,422	-				+1.6
3,300,422	-				-0.1
3,300,485	-				-2.0
3,300,488	+				-0.7
3,300,488	+				-0.0
3,300,489	-				+1.4
3,300,489	-				+1.3
3,300,718	+				-0.8
3,300,718	+				+0.0
3,300,719	-				+1.4
3,300,817	-				-0.2
3,300,866	+		PFR28_02826	0.11	-0.6
3,300,867	-		PFR28_02826	0.11	+0.2
3,301,049	-		PFR28_02826	0.17	-0.3
3,301,229	+		PFR28_02826	0.23	-0.4
3,301,229	+		PFR28_02826	0.23	+0.4
3,301,230	-		PFR28_02826	0.23	+1.1
3,301,230	-		PFR28_02826	0.23	+1.0
3,301,230	-		PFR28_02826	0.23	+0.5
3,301,268	-		PFR28_02826	0.24	+0.7
3,301,268	-		PFR28_02826	0.24	-0.2
3,301,409	-		PFR28_02826	0.28	+0.6
3,301,558	+		PFR28_02826	0.33	+0.5
3,301,558	+		PFR28_02826	0.33	+1.0
3,301,559	-		PFR28_02826	0.33	-0.2
3,301,570	+		PFR28_02826	0.33	-1.5
3,302,056	-		PFR28_02826	0.48	-0.7
3,302,056	-		PFR28_02826	0.48	-1.0
3,302,056	-		PFR28_02826	0.48	+1.2
3,302,232	+		PFR28_02826	0.53	-0.2
3,302,233	-		PFR28_02826	0.53	-0.5
3,302,474	-		PFR28_02826	0.61	-1.0
3,302,637	+		PFR28_02826	0.65	-2.2
3,303,093	+		PFR28_02826	0.79	-0.2
3,303,093	+		PFR28_02826	0.79	+0.6
3,303,294	+		PFR28_02826	0.86	+0.0
3,303,294	+		PFR28_02826	0.86	-0.3
3,303,496	+				-0.8
3,303,496	+				-0.1
3,303,511	+				+0.1
3,303,512	-				-0.5
3,303,560	+				+0.4
3,303,707	-				-1.6
3,303,715	+				+0.2
3,303,716	-				+1.3
3,303,777	+				+0.7
3,303,777	+				+2.0
3,303,777	+				+0.5
3,303,777	+				-3.0
3,303,777	+				+0.6
3,303,778	-				+1.3
3,303,959	+		PFR28_02827	0.29	+0.6
3,303,981	+		PFR28_02827	0.34	-1.1
3,303,982	-		PFR28_02827	0.34	-0.4
3,303,982	-		PFR28_02827	0.34	+1.3
3,304,018	+		PFR28_02827	0.42	-0.6
3,304,019	-		PFR28_02827	0.42	-1.2
3,304,165	+		PFR28_02827	0.74	-0.0
3,304,165	+		PFR28_02827	0.74	-1.0
3,304,165	+		PFR28_02827	0.74	-1.2
3,304,165	+		PFR28_02827	0.74	+0.6
3,304,165	+		PFR28_02827	0.74	-0.2
3,304,165	+		PFR28_02827	0.74	-0.1
3,304,165	+		PFR28_02827	0.74	-0.8
3,304,166	-		PFR28_02827	0.75	+0.4
3,304,166	-		PFR28_02827	0.75	-0.9
3,304,174	+		PFR28_02827	0.76	+0.6
3,304,174	+		PFR28_02827	0.76	-1.1
3,304,175	-		PFR28_02827	0.77	+0.7
3,304,175	-		PFR28_02827	0.77	+0.8
3,304,274	+				-0.5
3,304,274	+				-1.0
3,304,274	+				-0.8
3,304,274	+				+1.0
3,304,352	+				+0.4
3,304,353	-				-0.1
3,304,353	-				-0.1
3,304,353	-				-0.3
3,304,356	+				+0.3
3,304,371	-				-0.0
3,304,498	-		PFR28_02828	0.10	+1.0
3,304,498	-		PFR28_02828	0.10	+0.3
3,304,498	-		PFR28_02828	0.10	-0.8
3,304,498	-		PFR28_02828	0.10	-0.7