Strain Fitness in Pseudomonas sp. RS175 around PFR28_00515

Experiment: 2-Keto-D-gluconic hemicalcium salt (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00513 and PFR28_00514 are separated by 135 nucleotidesPFR28_00514 and PFR28_00515 overlap by 7 nucleotidesPFR28_00515 and PFR28_00516 are separated by 193 nucleotides PFR28_00513: PFR28_00513 - hypothetical protein, at 549,331 to 549,816 _00513 PFR28_00514: PFR28_00514 - hypothetical protein, at 549,952 to 550,452 _00514 PFR28_00515: PFR28_00515 - hypothetical protein, at 550,446 to 550,943 _00515 PFR28_00516: PFR28_00516 - Peptidoglycan-associated lipoprotein, at 551,137 to 551,832 _00516 Position (kb) 550 551Strain fitness (log2 ratio) -2 -1 0 1at 549.499 kb on - strand, within PFR28_00513at 549.518 kb on + strand, within PFR28_00513at 549.518 kb on + strand, within PFR28_00513at 549.518 kb on + strand, within PFR28_00513at 549.519 kb on - strand, within PFR28_00513at 549.519 kb on - strand, within PFR28_00513at 549.519 kb on - strand, within PFR28_00513at 549.688 kb on + strand, within PFR28_00513at 549.901 kb on + strandat 549.990 kb on + strandat 549.990 kb on + strandat 549.990 kb on + strandat 549.991 kb on - strandat 549.991 kb on - strandat 550.058 kb on + strand, within PFR28_00514at 550.286 kb on + strand, within PFR28_00514at 550.287 kb on - strand, within PFR28_00514at 550.307 kb on + strand, within PFR28_00514at 550.307 kb on + strand, within PFR28_00514at 550.307 kb on + strand, within PFR28_00514at 550.307 kb on + strand, within PFR28_00514at 550.307 kb on + strand, within PFR28_00514at 550.308 kb on - strand, within PFR28_00514at 550.308 kb on - strand, within PFR28_00514at 550.308 kb on - strand, within PFR28_00514at 550.308 kb on - strand, within PFR28_00514at 550.308 kb on - strand, within PFR28_00514at 550.308 kb on - strand, within PFR28_00514at 550.308 kb on - strand, within PFR28_00514at 550.308 kb on - strand, within PFR28_00514at 550.308 kb on - strand, within PFR28_00514at 550.308 kb on - strand, within PFR28_00514at 550.308 kb on - strand, within PFR28_00514at 550.308 kb on - strand, within PFR28_00514at 550.447 kb on + strandat 550.447 kb on + strandat 550.447 kb on + strandat 550.447 kb on + strandat 550.448 kb on - strandat 550.448 kb on - strandat 550.448 kb on - strandat 550.448 kb on - strandat 550.448 kb on - strandat 550.448 kb on - strandat 550.448 kb on - strandat 550.448 kb on - strandat 550.448 kb on - strandat 550.448 kb on - strandat 550.448 kb on - strandat 550.448 kb on - strandat 550.448 kb on - strandat 550.457 kb on - strandat 550.457 kb on - strandat 550.519 kb on + strand, within PFR28_00515at 550.519 kb on + strand, within PFR28_00515at 550.519 kb on + strand, within PFR28_00515at 550.519 kb on + strand, within PFR28_00515at 550.519 kb on + strand, within PFR28_00515at 550.519 kb on + strand, within PFR28_00515at 550.519 kb on + strand, within PFR28_00515at 550.519 kb on + strand, within PFR28_00515at 550.519 kb on + strand, within PFR28_00515at 550.519 kb on + strand, within PFR28_00515at 550.519 kb on + strand, within PFR28_00515at 550.520 kb on - strand, within PFR28_00515at 550.520 kb on - strand, within PFR28_00515at 550.520 kb on - strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.534 kb on + strand, within PFR28_00515at 550.535 kb on - strand, within PFR28_00515at 550.535 kb on - strand, within PFR28_00515at 550.535 kb on - strand, within PFR28_00515at 550.535 kb on - strand, within PFR28_00515at 550.535 kb on - strand, within PFR28_00515at 550.535 kb on - strand, within PFR28_00515at 550.535 kb on - strand, within PFR28_00515at 550.535 kb on - strand, within PFR28_00515at 550.653 kb on - strand, within PFR28_00515at 551.089 kb on + strandat 551.144 kb on + strandat 551.144 kb on + strandat 551.144 kb on + strandat 551.144 kb on + strandat 551.144 kb on + strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.145 kb on - strandat 551.175 kb on + strandat 551.175 kb on + strandat 551.176 kb on - strandat 551.176 kb on - strandat 551.379 kb on + strand, within PFR28_00516at 551.626 kb on - strand, within PFR28_00516at 551.650 kb on + strand, within PFR28_00516at 551.650 kb on + strand, within PFR28_00516at 551.650 kb on + strand, within PFR28_00516at 551.650 kb on + strand, within PFR28_00516at 551.650 kb on + strand, within PFR28_00516at 551.651 kb on - strand, within PFR28_00516at 551.651 kb on - strand, within PFR28_00516at 551.651 kb on - strand, within PFR28_00516at 551.651 kb on - strand, within PFR28_00516at 551.651 kb on - strand, within PFR28_00516at 551.651 kb on - strand, within PFR28_00516at 551.651 kb on - strand, within PFR28_00516at 551.651 kb on - strand, within PFR28_00516at 551.651 kb on - strand, within PFR28_00516at 551.652 kb on + strand, within PFR28_00516at 551.695 kb on + strand, within PFR28_00516at 551.695 kb on + strand, within PFR28_00516at 551.695 kb on + strand, within PFR28_00516at 551.696 kb on - strand, within PFR28_00516at 551.696 kb on - strand, within PFR28_00516at 551.696 kb on - strand, within PFR28_00516at 551.696 kb on - strand, within PFR28_00516at 551.696 kb on - strand, within PFR28_00516at 551.714 kb on + strand, within PFR28_00516at 551.715 kb on - strand, within PFR28_00516at 551.715 kb on - strand, within PFR28_00516at 551.822 kb on + strandat 551.870 kb on + strandat 551.891 kb on + strandat 551.914 kb on + strandat 551.915 kb on - strandat 551.915 kb on - strandat 551.933 kb on + strandat 551.933 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Keto-D-gluconic hemicalcium salt (C) 10 mM
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549,499 - PFR28_00513 0.35 +0.4
549,518 + PFR28_00513 0.38 -0.7
549,518 + PFR28_00513 0.38 +0.3
549,518 + PFR28_00513 0.38 +0.1
549,519 - PFR28_00513 0.39 -0.5
549,519 - PFR28_00513 0.39 +0.3
549,519 - PFR28_00513 0.39 -0.3
549,688 + PFR28_00513 0.73 -1.4
549,901 + -0.6
549,990 + -0.4
549,990 + -0.5
549,990 + -0.3
549,991 - -0.6
549,991 - +1.0
550,058 + PFR28_00514 0.21 +1.0
550,286 + PFR28_00514 0.67 +0.1
550,287 - PFR28_00514 0.67 -0.3
550,307 + PFR28_00514 0.71 -0.4
550,307 + PFR28_00514 0.71 -1.3
550,307 + PFR28_00514 0.71 +0.5
550,307 + PFR28_00514 0.71 -0.1
550,307 + PFR28_00514 0.71 -0.2
550,308 - PFR28_00514 0.71 -0.2
550,308 - PFR28_00514 0.71 -0.6
550,308 - PFR28_00514 0.71 +0.9
550,308 - PFR28_00514 0.71 +1.2
550,308 - PFR28_00514 0.71 +0.5
550,308 - PFR28_00514 0.71 +0.2
550,308 - PFR28_00514 0.71 +0.4
550,308 - PFR28_00514 0.71 +0.4
550,308 - PFR28_00514 0.71 -0.6
550,308 - PFR28_00514 0.71 +0.2
550,308 - PFR28_00514 0.71 -0.3
550,308 - PFR28_00514 0.71 -0.4
550,447 + +0.3
550,447 + -0.4
550,447 + +0.1
550,447 + -0.8
550,448 - +0.8
550,448 - +0.5
550,448 - -0.9
550,448 - -0.1
550,448 - -0.5
550,448 - -0.2
550,448 - +0.3
550,448 - -1.1
550,448 - +0.3
550,448 - +0.2
550,448 - -0.1
550,448 - -1.1
550,448 - +0.1
550,457 - +1.1
550,457 - +1.5
550,519 + PFR28_00515 0.15 -0.3
550,519 + PFR28_00515 0.15 +0.2
550,519 + PFR28_00515 0.15 +0.2
550,519 + PFR28_00515 0.15 +0.7
550,519 + PFR28_00515 0.15 -0.4
550,519 + PFR28_00515 0.15 +1.0
550,519 + PFR28_00515 0.15 +1.7
550,519 + PFR28_00515 0.15 +0.1
550,519 + PFR28_00515 0.15 +0.3
550,519 + PFR28_00515 0.15 +0.8
550,519 + PFR28_00515 0.15 -0.1
550,520 - PFR28_00515 0.15 -0.7
550,520 - PFR28_00515 0.15 -0.1
550,520 - PFR28_00515 0.15 -0.1
550,534 + PFR28_00515 0.18 +1.1
550,534 + PFR28_00515 0.18 +1.1
550,534 + PFR28_00515 0.18 -0.1
550,534 + PFR28_00515 0.18 +0.8
550,534 + PFR28_00515 0.18 -0.3
550,534 + PFR28_00515 0.18 -0.3
550,534 + PFR28_00515 0.18 +0.9
550,534 + PFR28_00515 0.18 -0.6
550,534 + PFR28_00515 0.18 -0.2
550,534 + PFR28_00515 0.18 -2.4
550,534 + PFR28_00515 0.18 +0.4
550,534 + PFR28_00515 0.18 -0.4
550,534 + PFR28_00515 0.18 +0.1
550,534 + PFR28_00515 0.18 -0.3
550,535 - PFR28_00515 0.18 +1.7
550,535 - PFR28_00515 0.18 +0.5
550,535 - PFR28_00515 0.18 -0.8
550,535 - PFR28_00515 0.18 +0.3
550,535 - PFR28_00515 0.18 +1.0
550,535 - PFR28_00515 0.18 +1.6
550,535 - PFR28_00515 0.18 -1.3
550,535 - PFR28_00515 0.18 -0.4
550,653 - PFR28_00515 0.42 -0.4
551,089 + -2.0
551,144 + +0.5
551,144 + -0.4
551,144 + -0.7
551,144 + +0.2
551,144 + -0.3
551,145 - -0.1
551,145 - -2.2
551,145 - -0.5
551,145 - +0.7
551,145 - -2.1
551,145 - -0.5
551,145 - -0.8
551,145 - +0.5
551,145 - +0.1
551,145 - -0.6
551,145 - +0.3
551,145 - -0.5
551,145 - -0.0
551,145 - -0.3
551,145 - +1.6
551,175 + +1.4
551,175 + +0.7
551,176 - +1.1
551,176 - -1.1
551,379 + PFR28_00516 0.35 +0.8
551,626 - PFR28_00516 0.70 +0.2
551,650 + PFR28_00516 0.74 -0.7
551,650 + PFR28_00516 0.74 +0.2
551,650 + PFR28_00516 0.74 +0.3
551,650 + PFR28_00516 0.74 -0.6
551,650 + PFR28_00516 0.74 -0.2
551,651 - PFR28_00516 0.74 +1.3
551,651 - PFR28_00516 0.74 +0.3
551,651 - PFR28_00516 0.74 +0.2
551,651 - PFR28_00516 0.74 +0.7
551,651 - PFR28_00516 0.74 +0.4
551,651 - PFR28_00516 0.74 +0.5
551,651 - PFR28_00516 0.74 +0.4
551,651 - PFR28_00516 0.74 -0.0
551,651 - PFR28_00516 0.74 -1.5
551,652 + PFR28_00516 0.74 -0.2
551,695 + PFR28_00516 0.80 +0.7
551,695 + PFR28_00516 0.80 +0.3
551,695 + PFR28_00516 0.80 +0.9
551,696 - PFR28_00516 0.80 -0.1
551,696 - PFR28_00516 0.80 +1.3
551,696 - PFR28_00516 0.80 +0.7
551,696 - PFR28_00516 0.80 -0.2
551,696 - PFR28_00516 0.80 +0.1
551,714 + PFR28_00516 0.83 +0.6
551,715 - PFR28_00516 0.83 +0.2
551,715 - PFR28_00516 0.83 +0.4
551,822 + -0.1
551,870 + +0.5
551,891 + +1.0
551,914 + -0.3
551,915 - +0.3
551,915 - -0.3
551,933 + -0.0
551,933 + -0.1

Or see this region's nucleotide sequence