Experiment: L-Arabinose (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00190 and PFR28_00191 are separated by 283 nucleotides PFR28_00191 and PFR28_00192 are separated by 104 nucleotides
PFR28_00190: PFR28_00190 - Metal-pseudopaline receptor CntO, at 212,251 to 214,356
_00190
PFR28_00191: PFR28_00191 - Serine endoprotease DegS, at 214,640 to 215,800
_00191
PFR28_00192: PFR28_00192 - GTP cyclohydrolase 1 type 2, at 215,905 to 216,663
_00192
Position (kb) 214
215
216 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 213.826 kb on - strand, within PFR28_00190 at 213.989 kb on + strand, within PFR28_00190 at 213.990 kb on - strand, within PFR28_00190 at 214.022 kb on + strand, within PFR28_00190 at 214.022 kb on + strand, within PFR28_00190 at 214.023 kb on - strand, within PFR28_00190 at 214.023 kb on - strand, within PFR28_00190 at 214.028 kb on + strand, within PFR28_00190 at 214.028 kb on + strand, within PFR28_00190 at 214.028 kb on + strand, within PFR28_00190 at 214.028 kb on + strand, within PFR28_00190 at 214.028 kb on + strand, within PFR28_00190 at 214.029 kb on - strand, within PFR28_00190 at 214.031 kb on - strand, within PFR28_00190 at 214.031 kb on - strand, within PFR28_00190 at 214.239 kb on - strand at 214.239 kb on - strand at 214.391 kb on + strand at 214.423 kb on - strand at 214.490 kb on + strand at 214.491 kb on - strand at 214.518 kb on - strand at 214.530 kb on - strand at 214.562 kb on - strand at 214.588 kb on + strand at 214.589 kb on - strand at 214.641 kb on + strand at 214.641 kb on + strand at 214.641 kb on + strand at 214.642 kb on - strand at 214.642 kb on - strand at 214.642 kb on - strand at 215.074 kb on + strand, within PFR28_00191 at 215.074 kb on + strand, within PFR28_00191 at 215.166 kb on + strand, within PFR28_00191 at 215.166 kb on + strand, within PFR28_00191 at 215.166 kb on + strand, within PFR28_00191 at 215.167 kb on - strand, within PFR28_00191 at 215.167 kb on - strand, within PFR28_00191 at 215.167 kb on - strand, within PFR28_00191 at 215.167 kb on - strand, within PFR28_00191 at 215.167 kb on - strand, within PFR28_00191 at 215.449 kb on + strand, within PFR28_00191 at 215.450 kb on - strand, within PFR28_00191 at 215.450 kb on - strand, within PFR28_00191 at 215.450 kb on - strand, within PFR28_00191 at 215.450 kb on - strand, within PFR28_00191 at 215.450 kb on - strand, within PFR28_00191 at 215.451 kb on + strand, within PFR28_00191 at 215.451 kb on + strand, within PFR28_00191 at 215.451 kb on + strand, within PFR28_00191 at 215.452 kb on - strand, within PFR28_00191 at 215.452 kb on - strand, within PFR28_00191 at 215.452 kb on - strand, within PFR28_00191 at 215.452 kb on - strand, within PFR28_00191 at 215.452 kb on - strand, within PFR28_00191 at 215.452 kb on - strand, within PFR28_00191 at 215.590 kb on + strand, within PFR28_00191 at 215.590 kb on + strand, within PFR28_00191 at 215.591 kb on - strand, within PFR28_00191 at 215.591 kb on - strand, within PFR28_00191 at 215.591 kb on - strand, within PFR28_00191 at 215.592 kb on + strand, within PFR28_00191 at 215.592 kb on + strand, within PFR28_00191 at 215.592 kb on + strand, within PFR28_00191 at 215.592 kb on + strand, within PFR28_00191 at 215.593 kb on - strand, within PFR28_00191 at 215.593 kb on - strand, within PFR28_00191 at 215.593 kb on - strand, within PFR28_00191 at 215.593 kb on - strand, within PFR28_00191 at 215.593 kb on - strand, within PFR28_00191 at 215.593 kb on - strand, within PFR28_00191 at 215.637 kb on + strand, within PFR28_00191 at 215.637 kb on + strand, within PFR28_00191 at 215.637 kb on + strand, within PFR28_00191 at 215.638 kb on - strand, within PFR28_00191 at 215.638 kb on - strand, within PFR28_00191 at 215.638 kb on - strand, within PFR28_00191 at 215.801 kb on + strand at 215.801 kb on + strand at 215.801 kb on + strand at 215.801 kb on + strand at 215.801 kb on + strand at 215.802 kb on - strand at 215.802 kb on - strand at 215.802 kb on - strand at 215.802 kb on - strand at 215.802 kb on - strand at 215.812 kb on + strand at 215.812 kb on + strand at 215.812 kb on + strand at 215.812 kb on + strand at 215.812 kb on + strand at 215.813 kb on - strand at 215.813 kb on - strand at 215.813 kb on - strand at 215.813 kb on - strand at 215.813 kb on - strand at 215.813 kb on - strand at 215.833 kb on - strand at 215.844 kb on + strand at 215.857 kb on + strand at 215.857 kb on + strand at 215.857 kb on + strand at 215.857 kb on + strand at 215.858 kb on - strand at 215.858 kb on - strand at 215.858 kb on - strand at 215.858 kb on - strand at 215.859 kb on + strand at 215.859 kb on + strand at 215.860 kb on - strand at 215.860 kb on - strand at 215.860 kb on - strand at 215.860 kb on - strand at 215.889 kb on - strand at 215.892 kb on + strand at 215.892 kb on + strand at 215.892 kb on + strand at 215.892 kb on + strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.893 kb on - strand at 215.913 kb on - strand at 215.913 kb on - strand at 215.974 kb on + strand at 215.974 kb on + strand at 215.996 kb on + strand, within PFR28_00192 at 215.997 kb on - strand, within PFR28_00192 at 216.106 kb on + strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.107 kb on - strand, within PFR28_00192 at 216.196 kb on + strand, within PFR28_00192 at 216.197 kb on - strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.451 kb on + strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.452 kb on - strand, within PFR28_00192 at 216.487 kb on + strand, within PFR28_00192 at 216.487 kb on + strand, within PFR28_00192 at 216.488 kb on - strand, within PFR28_00192 at 216.488 kb on - strand, within PFR28_00192 at 216.604 kb on + strand at 216.605 kb on - strand at 216.605 kb on - strand at 216.605 kb on - strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.669 kb on + strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.670 kb on - strand at 216.671 kb on + strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.672 kb on - strand at 216.710 kb on + strand at 216.737 kb on + strand at 216.738 kb on - strand at 216.738 kb on - strand at 216.768 kb on + strand at 216.768 kb on + strand at 216.769 kb on - strand at 216.786 kb on + strand at 216.786 kb on + strand at 216.786 kb on + strand at 216.786 kb on + strand at 216.787 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) 10 mM remove 213,826 - PFR28_00190 0.75 +0.7 213,989 + PFR28_00190 0.83 +0.5 213,990 - PFR28_00190 0.83 +0.2 214,022 + PFR28_00190 0.84 -0.1 214,022 + PFR28_00190 0.84 -1.6 214,023 - PFR28_00190 0.84 -0.7 214,023 - PFR28_00190 0.84 +0.2 214,028 + PFR28_00190 0.84 -0.9 214,028 + PFR28_00190 0.84 +0.2 214,028 + PFR28_00190 0.84 +0.2 214,028 + PFR28_00190 0.84 -0.4 214,028 + PFR28_00190 0.84 +1.2 214,029 - PFR28_00190 0.84 -0.7 214,031 - PFR28_00190 0.85 +0.3 214,031 - PFR28_00190 0.85 -0.3 214,239 - -0.0 214,239 - -0.3 214,391 + -0.4 214,423 - -0.1 214,490 + -0.7 214,491 - +1.4 214,518 - +0.6 214,530 - -0.2 214,562 - +0.4 214,588 + +0.4 214,589 - -0.5 214,641 + -0.2 214,641 + +1.2 214,641 + -0.5 214,642 - +0.9 214,642 - +0.5 214,642 - +0.0 215,074 + PFR28_00191 0.37 -0.2 215,074 + PFR28_00191 0.37 +0.2 215,166 + PFR28_00191 0.45 -0.9 215,166 + PFR28_00191 0.45 +0.3 215,166 + PFR28_00191 0.45 +1.0 215,167 - PFR28_00191 0.45 +0.5 215,167 - PFR28_00191 0.45 +0.2 215,167 - PFR28_00191 0.45 +1.5 215,167 - PFR28_00191 0.45 -1.8 215,167 - PFR28_00191 0.45 -0.1 215,449 + PFR28_00191 0.70 -1.4 215,450 - PFR28_00191 0.70 +1.6 215,450 - PFR28_00191 0.70 +0.5 215,450 - PFR28_00191 0.70 -1.9 215,450 - PFR28_00191 0.70 +0.6 215,450 - PFR28_00191 0.70 +0.1 215,451 + PFR28_00191 0.70 +0.7 215,451 + PFR28_00191 0.70 +0.8 215,451 + PFR28_00191 0.70 -1.2 215,452 - PFR28_00191 0.70 -0.5 215,452 - PFR28_00191 0.70 +0.5 215,452 - PFR28_00191 0.70 +1.7 215,452 - PFR28_00191 0.70 -0.3 215,452 - PFR28_00191 0.70 +0.8 215,452 - PFR28_00191 0.70 -1.1 215,590 + PFR28_00191 0.82 -1.2 215,590 + PFR28_00191 0.82 +0.7 215,591 - PFR28_00191 0.82 -0.4 215,591 - PFR28_00191 0.82 +0.2 215,591 - PFR28_00191 0.82 +1.1 215,592 + PFR28_00191 0.82 -0.6 215,592 + PFR28_00191 0.82 +0.2 215,592 + PFR28_00191 0.82 +0.2 215,592 + PFR28_00191 0.82 -0.3 215,593 - PFR28_00191 0.82 +0.8 215,593 - PFR28_00191 0.82 +0.6 215,593 - PFR28_00191 0.82 -1.8 215,593 - PFR28_00191 0.82 -0.4 215,593 - PFR28_00191 0.82 -0.4 215,593 - PFR28_00191 0.82 +0.6 215,637 + PFR28_00191 0.86 -0.2 215,637 + PFR28_00191 0.86 +0.3 215,637 + PFR28_00191 0.86 +0.3 215,638 - PFR28_00191 0.86 +0.6 215,638 - PFR28_00191 0.86 +0.7 215,638 - PFR28_00191 0.86 -0.0 215,801 + +0.9 215,801 + -0.2 215,801 + +1.1 215,801 + +0.1 215,801 + +0.2 215,802 - +0.5 215,802 - +0.0 215,802 - +0.9 215,802 - +0.0 215,802 - +0.1 215,812 + +0.5 215,812 + +0.2 215,812 + -0.4 215,812 + +0.2 215,812 + -0.3 215,813 - +0.2 215,813 - -0.7 215,813 - +0.4 215,813 - +0.8 215,813 - -0.8 215,813 - -0.3 215,833 - +0.2 215,844 + +0.3 215,857 + -0.2 215,857 + -0.4 215,857 + -0.2 215,857 + -0.4 215,858 - -1.6 215,858 - -0.7 215,858 - +0.3 215,858 - -0.9 215,859 + +0.6 215,859 + +1.3 215,860 - -0.7 215,860 - -2.0 215,860 - +0.1 215,860 - -0.6 215,889 - -0.2 215,892 + +0.1 215,892 + -0.6 215,892 + +1.1 215,892 + +0.3 215,893 - -0.3 215,893 - -0.3 215,893 - -1.7 215,893 - -0.3 215,893 - -0.3 215,893 - -0.5 215,913 - -2.3 215,913 - +0.3 215,974 + -0.2 215,974 + -0.1 215,996 + PFR28_00192 0.12 +0.0 215,997 - PFR28_00192 0.12 -1.7 216,106 + PFR28_00192 0.26 -0.2 216,107 - PFR28_00192 0.27 -0.7 216,107 - PFR28_00192 0.27 +0.2 216,107 - PFR28_00192 0.27 -0.5 216,107 - PFR28_00192 0.27 -0.9 216,196 + PFR28_00192 0.38 -0.3 216,197 - PFR28_00192 0.38 +0.1 216,451 + PFR28_00192 0.72 +0.2 216,451 + PFR28_00192 0.72 +0.8 216,451 + PFR28_00192 0.72 +0.6 216,451 + PFR28_00192 0.72 -0.2 216,451 + PFR28_00192 0.72 -1.1 216,451 + PFR28_00192 0.72 +0.5 216,451 + PFR28_00192 0.72 +1.3 216,451 + PFR28_00192 0.72 -0.2 216,451 + PFR28_00192 0.72 +0.0 216,452 - PFR28_00192 0.72 -0.3 216,452 - PFR28_00192 0.72 -0.6 216,452 - PFR28_00192 0.72 +0.2 216,452 - PFR28_00192 0.72 +0.2 216,452 - PFR28_00192 0.72 +0.8 216,487 + PFR28_00192 0.77 +0.2 216,487 + PFR28_00192 0.77 -0.3 216,488 - PFR28_00192 0.77 +0.3 216,488 - PFR28_00192 0.77 +0.2 216,604 + -0.6 216,605 - +0.2 216,605 - -0.2 216,605 - -0.2 216,669 + -0.9 216,669 + -0.4 216,669 + +0.1 216,669 + +0.2 216,669 + -1.1 216,669 + -0.9 216,669 + +0.8 216,669 + -0.2 216,669 + +0.1 216,669 + -0.1 216,669 + -0.9 216,669 + +0.1 216,670 - +0.6 216,670 - -0.4 216,670 - -0.3 216,670 - -0.5 216,670 - +0.2 216,670 - +0.7 216,670 - -1.9 216,670 - +0.1 216,670 - +0.5 216,670 - -0.2 216,670 - +0.1 216,670 - -0.4 216,670 - +0.9 216,670 - -0.3 216,671 + -1.2 216,672 - +0.1 216,672 - +0.1 216,672 - +0.9 216,672 - -1.2 216,672 - -0.9 216,710 + -0.7 216,737 + -0.7 216,738 - -0.3 216,738 - -1.6 216,768 + -1.6 216,768 + -1.6 216,769 - -3.7 216,786 + +0.4 216,786 + +0.8 216,786 + +0.1 216,786 + -0.7 216,787 - -0.4
Or see this region's nucleotide sequence