Strain Fitness in Escherichia coli ECRC101 around MCAODC_12315

Experiment: T2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	T2
2,438,563	-				+0.6
2,438,575	+	yfgH	MCAODC_12305	0.12	-0.6
2,438,575	+	yfgH	MCAODC_12305	0.12	-0.4
2,438,597	-	yfgH	MCAODC_12305	0.16	-2.9
2,438,624	-	yfgH	MCAODC_12305	0.22	-0.1
2,438,629	+	yfgH	MCAODC_12305	0.22	-2.1
2,438,629	+	yfgH	MCAODC_12305	0.22	-2.5
2,438,630	-	yfgH	MCAODC_12305	0.23	-0.3
2,438,630	-	yfgH	MCAODC_12305	0.23	-0.9
2,438,630	-	yfgH	MCAODC_12305	0.23	-0.3
2,438,630	-	yfgH	MCAODC_12305	0.23	+0.0
2,438,630	-	yfgH	MCAODC_12305	0.23	+0.3
2,438,631	+	yfgH	MCAODC_12305	0.23	-0.0
2,438,631	+	yfgH	MCAODC_12305	0.23	+3.0
2,438,631	+	yfgH	MCAODC_12305	0.23	-0.6
2,438,632	-	yfgH	MCAODC_12305	0.23	-0.3
2,438,632	-	yfgH	MCAODC_12305	0.23	+0.2
2,438,632	-	yfgH	MCAODC_12305	0.23	+1.3
2,438,650	+	yfgH	MCAODC_12305	0.27	-1.3
2,438,650	+	yfgH	MCAODC_12305	0.27	+3.0
2,438,652	+	yfgH	MCAODC_12305	0.27	+2.4
2,438,652	+	yfgH	MCAODC_12305	0.27	-0.0
2,438,653	-	yfgH	MCAODC_12305	0.27	-2.2
2,438,653	-	yfgH	MCAODC_12305	0.27	-0.6
2,438,653	-	yfgH	MCAODC_12305	0.27	+1.3
2,438,653	-	yfgH	MCAODC_12305	0.27	-0.4
2,438,653	-	yfgH	MCAODC_12305	0.27	+0.4
2,438,676	-	yfgH	MCAODC_12305	0.32	+1.3
2,438,676	-	yfgH	MCAODC_12305	0.32	-0.6
2,438,695	+	yfgH	MCAODC_12305	0.35	-0.0
2,438,696	-	yfgH	MCAODC_12305	0.35	+0.3
2,438,931	+	yfgH	MCAODC_12305	0.81	-0.9
2,439,045	-				-0.5
2,439,430	+	yfgG	MCAODC_12310	0.51	+0.9
2,439,431	-	yfgG	MCAODC_12310	0.51	+1.6
2,439,435	-	yfgG	MCAODC_12310	0.53	+0.4
2,439,472	-	yfgG	MCAODC_12310	0.75	-1.1
2,439,515	+				+1.2
2,439,551	-				+1.1
2,439,575	+		MCAODC_12315	0.16	-0.5
2,439,576	-		MCAODC_12315	0.16	-0.7
2,439,687	+		MCAODC_12315	0.89	-2.8
2,439,688	-				+0.9
2,439,702	-				+0.0
2,439,718	+				-0.6
2,439,748	+				-0.8
2,439,750	+				-2.3
2,439,751	-				-1.0
2,439,796	-				+0.9
2,439,797	+				+1.5
2,439,798	-				-0.9
2,439,845	+				+0.6
2,439,903	+				+0.1
2,439,956	-				+1.5
2,440,113	+	pdeF	MCAODC_12320	0.10	+0.5
2,440,160	+	pdeF	MCAODC_12320	0.12	+2.3
2,440,169	+	pdeF	MCAODC_12320	0.13	+1.4
2,440,169	+	pdeF	MCAODC_12320	0.13	+0.9
2,440,203	-	pdeF	MCAODC_12320	0.14	-0.3
2,440,203	-	pdeF	MCAODC_12320	0.14	-1.2
2,440,256	+	pdeF	MCAODC_12320	0.17	+2.0
2,440,256	+	pdeF	MCAODC_12320	0.17	-1.5
2,440,256	+	pdeF	MCAODC_12320	0.17	+0.7
2,440,257	-	pdeF	MCAODC_12320	0.17	-0.1
2,440,322	-	pdeF	MCAODC_12320	0.19	+0.3
2,440,381	+	pdeF	MCAODC_12320	0.22	+0.1
2,440,382	-	pdeF	MCAODC_12320	0.22	+0.2
2,440,434	+	pdeF	MCAODC_12320	0.24	-0.0
2,440,435	-	pdeF	MCAODC_12320	0.25	-0.9
2,440,475	+	pdeF	MCAODC_12320	0.26	-0.1
2,440,492	+	pdeF	MCAODC_12320	0.27	-2.4
2,440,552	+	pdeF	MCAODC_12320	0.30	+2.4
2,440,562	-	pdeF	MCAODC_12320	0.30	+1.1
2,440,562	-	pdeF	MCAODC_12320	0.30	-0.6
2,440,573	+	pdeF	MCAODC_12320	0.31	+0.6
2,440,617	+	pdeF	MCAODC_12320	0.33	+0.3
2,440,618	-	pdeF	MCAODC_12320	0.33	+0.8
2,440,620	-	pdeF	MCAODC_12320	0.33	-1.4
2,440,671	+	pdeF	MCAODC_12320	0.35	-1.3
2,440,671	+	pdeF	MCAODC_12320	0.35	-1.5
2,440,672	-	pdeF	MCAODC_12320	0.35	-0.3
2,440,672	-	pdeF	MCAODC_12320	0.35	-0.2
2,440,673	+	pdeF	MCAODC_12320	0.35	-0.1
2,440,673	+	pdeF	MCAODC_12320	0.35	+0.3
2,440,673	+	pdeF	MCAODC_12320	0.35	-0.8
2,440,674	-	pdeF	MCAODC_12320	0.35	-0.0
2,440,674	-	pdeF	MCAODC_12320	0.35	-0.4
2,440,674	-	pdeF	MCAODC_12320	0.35	+1.7
2,440,674	-	pdeF	MCAODC_12320	0.35	-0.2
2,440,674	-	pdeF	MCAODC_12320	0.35	-1.9