Experiment: T2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_19815 and hchA are separated by 591 nucleotides hchA and hprS are separated by 107 nucleotides
MCAODC_19815: MCAODC_19815 - Outer membrane protein, at 788,416 to 788,991
_19815
MCAODC_19820: hchA - protein deglycase HchA, at 789,583 to 790,434
hchA
MCAODC_19825: hprS - two-component system sensor histidine kinase HprS, at 790,542 to 791,900
hprS
Position (kb) 789
790
791 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 788.584 kb on - strand, within MCAODC_19815 at 788.609 kb on + strand, within MCAODC_19815 at 788.610 kb on - strand, within MCAODC_19815 at 788.616 kb on + strand, within MCAODC_19815 at 788.616 kb on + strand, within MCAODC_19815 at 788.616 kb on + strand, within MCAODC_19815 at 788.617 kb on - strand, within MCAODC_19815 at 788.617 kb on - strand, within MCAODC_19815 at 788.617 kb on - strand, within MCAODC_19815 at 788.620 kb on + strand, within MCAODC_19815 at 788.751 kb on + strand, within MCAODC_19815 at 788.751 kb on + strand, within MCAODC_19815 at 788.752 kb on - strand, within MCAODC_19815 at 788.758 kb on - strand, within MCAODC_19815 at 788.766 kb on - strand, within MCAODC_19815 at 788.784 kb on + strand, within MCAODC_19815 at 788.837 kb on - strand, within MCAODC_19815 at 788.850 kb on + strand, within MCAODC_19815 at 788.851 kb on - strand, within MCAODC_19815 at 788.860 kb on + strand, within MCAODC_19815 at 788.884 kb on + strand, within MCAODC_19815 at 788.884 kb on + strand, within MCAODC_19815 at 788.884 kb on + strand, within MCAODC_19815 at 788.893 kb on + strand, within MCAODC_19815 at 788.930 kb on - strand, within MCAODC_19815 at 789.016 kb on - strand at 789.155 kb on - strand at 789.316 kb on - strand at 789.367 kb on + strand at 789.458 kb on + strand at 789.459 kb on - strand at 789.544 kb on + strand at 789.560 kb on + strand at 789.670 kb on - strand, within hchA at 789.830 kb on - strand, within hchA at 789.830 kb on - strand, within hchA at 789.898 kb on + strand, within hchA at 789.898 kb on + strand, within hchA at 789.906 kb on + strand, within hchA at 789.952 kb on - strand, within hchA at 790.056 kb on + strand, within hchA at 790.064 kb on + strand, within hchA at 790.082 kb on + strand, within hchA at 790.082 kb on + strand, within hchA at 790.083 kb on - strand, within hchA at 790.083 kb on - strand, within hchA at 790.193 kb on - strand, within hchA at 790.248 kb on + strand, within hchA at 790.248 kb on + strand, within hchA at 790.270 kb on + strand, within hchA at 790.271 kb on - strand, within hchA at 790.334 kb on + strand, within hchA at 790.334 kb on + strand, within hchA at 790.334 kb on + strand, within hchA at 790.338 kb on + strand, within hchA at 790.338 kb on + strand, within hchA at 790.339 kb on - strand, within hchA at 790.442 kb on + strand at 790.442 kb on + strand at 790.455 kb on - strand at 790.484 kb on + strand at 790.521 kb on - strand at 790.578 kb on - strand at 790.597 kb on + strand at 790.597 kb on + strand at 790.598 kb on - strand at 790.602 kb on - strand at 790.602 kb on - strand at 790.680 kb on - strand, within hprS at 790.755 kb on - strand, within hprS at 791.159 kb on + strand, within hprS at 791.393 kb on + strand, within hprS at 791.413 kb on - strand, within hprS
Per-strain Table
Position Strand Gene LocusTag Fraction T2 remove 788,584 - MCAODC_19815 0.29 +0.7 788,609 + MCAODC_19815 0.34 -0.4 788,610 - MCAODC_19815 0.34 +0.5 788,616 + MCAODC_19815 0.35 -0.8 788,616 + MCAODC_19815 0.35 -1.3 788,616 + MCAODC_19815 0.35 +0.8 788,617 - MCAODC_19815 0.35 -0.1 788,617 - MCAODC_19815 0.35 +0.2 788,617 - MCAODC_19815 0.35 -2.6 788,620 + MCAODC_19815 0.35 +0.7 788,751 + MCAODC_19815 0.58 -1.3 788,751 + MCAODC_19815 0.58 +5.6 788,752 - MCAODC_19815 0.58 +0.2 788,758 - MCAODC_19815 0.59 +0.3 788,766 - MCAODC_19815 0.61 +0.4 788,784 + MCAODC_19815 0.64 +0.2 788,837 - MCAODC_19815 0.73 -1.0 788,850 + MCAODC_19815 0.75 -0.1 788,851 - MCAODC_19815 0.76 +0.0 788,860 + MCAODC_19815 0.77 -1.4 788,884 + MCAODC_19815 0.81 -1.2 788,884 + MCAODC_19815 0.81 +1.4 788,884 + MCAODC_19815 0.81 +0.6 788,893 + MCAODC_19815 0.83 -1.2 788,930 - MCAODC_19815 0.89 +0.8 789,016 - -0.9 789,155 - -2.5 789,316 - +0.6 789,367 + -0.7 789,458 + +2.4 789,459 - +0.3 789,544 + +0.6 789,560 + -3.8 789,670 - hchA MCAODC_19820 0.10 -1.5 789,830 - hchA MCAODC_19820 0.29 +0.5 789,830 - hchA MCAODC_19820 0.29 +1.1 789,898 + hchA MCAODC_19820 0.37 +2.0 789,898 + hchA MCAODC_19820 0.37 +0.7 789,906 + hchA MCAODC_19820 0.38 +0.6 789,952 - hchA MCAODC_19820 0.43 -0.5 790,056 + hchA MCAODC_19820 0.56 +0.3 790,064 + hchA MCAODC_19820 0.56 +1.8 790,082 + hchA MCAODC_19820 0.59 -0.3 790,082 + hchA MCAODC_19820 0.59 +0.7 790,083 - hchA MCAODC_19820 0.59 -0.3 790,083 - hchA MCAODC_19820 0.59 +2.3 790,193 - hchA MCAODC_19820 0.72 -0.8 790,248 + hchA MCAODC_19820 0.78 +2.3 790,248 + hchA MCAODC_19820 0.78 -1.6 790,270 + hchA MCAODC_19820 0.81 +0.7 790,271 - hchA MCAODC_19820 0.81 -1.3 790,334 + hchA MCAODC_19820 0.88 +0.3 790,334 + hchA MCAODC_19820 0.88 +2.4 790,334 + hchA MCAODC_19820 0.88 +1.0 790,338 + hchA MCAODC_19820 0.89 -0.3 790,338 + hchA MCAODC_19820 0.89 -0.2 790,339 - hchA MCAODC_19820 0.89 -1.1 790,442 + -1.0 790,442 + +0.1 790,455 - -0.6 790,484 + +0.9 790,521 - +0.0 790,578 - +0.3 790,597 + +1.1 790,597 + -1.4 790,598 - +0.8 790,602 - +1.3 790,602 - +1.3 790,680 - hprS MCAODC_19825 0.10 -0.6 790,755 - hprS MCAODC_19825 0.16 +1.7 791,159 + hprS MCAODC_19825 0.45 -1.2 791,393 + hprS MCAODC_19825 0.63 -0.2 791,413 - hprS MCAODC_19825 0.64 +0.7
Or see this region's nucleotide sequence