Experiment: EV240
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt baeR and yegP are separated by 190 nucleotides yegP and yegQ are separated by 147 nucleotides yegQ and ogrK are separated by 273 nucleotides ogrK and MCAODC_20790 are separated by 81 nucleotides
MCAODC_20765: baeR - two-component system response regulator BaeR, at 967,599 to 968,321
baeR
MCAODC_20770: yegP - UPF0339 protein YegP, at 968,512 to 968,844
yegP
MCAODC_20775: yegQ - tRNA 5-hydroxyuridine modification protein YegQ, at 968,992 to 970,353
yegQ
MCAODC_20785: ogrK - prophage transcriptional regulator OgrK, at 970,627 to 970,845
ogrK
MCAODC_20790: MCAODC_20790 - putative baseplate hub protein, at 970,927 to 972,090
_20790
Position (kb) 968
969
970
971 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 968.167 kb on - strand, within baeR at 968.176 kb on - strand, within baeR at 968.183 kb on - strand, within baeR at 968.186 kb on - strand, within baeR at 968.195 kb on + strand, within baeR at 968.196 kb on - strand, within baeR at 968.213 kb on + strand, within baeR at 968.214 kb on - strand, within baeR at 968.261 kb on + strand at 968.261 kb on + strand at 968.262 kb on - strand at 968.334 kb on + strand at 968.335 kb on - strand at 968.335 kb on - strand at 968.380 kb on - strand at 968.409 kb on - strand at 968.470 kb on + strand at 968.470 kb on + strand at 968.548 kb on - strand, within yegP at 968.568 kb on - strand, within yegP at 968.608 kb on + strand, within yegP at 968.608 kb on + strand, within yegP at 968.608 kb on + strand, within yegP at 968.609 kb on - strand, within yegP at 968.609 kb on - strand, within yegP at 968.677 kb on + strand, within yegP at 968.678 kb on - strand, within yegP at 968.761 kb on + strand, within yegP at 968.761 kb on + strand, within yegP at 968.761 kb on + strand, within yegP at 968.761 kb on + strand, within yegP at 968.762 kb on - strand, within yegP at 968.762 kb on - strand, within yegP at 968.842 kb on + strand at 968.843 kb on - strand at 968.846 kb on + strand at 968.846 kb on + strand at 968.846 kb on + strand at 968.921 kb on - strand at 968.991 kb on + strand at 968.991 kb on + strand at 968.992 kb on - strand at 968.998 kb on - strand at 969.073 kb on + strand at 969.178 kb on + strand, within yegQ at 969.273 kb on + strand, within yegQ at 969.274 kb on - strand, within yegQ at 969.509 kb on - strand, within yegQ at 969.536 kb on - strand, within yegQ at 969.537 kb on + strand, within yegQ at 969.564 kb on + strand, within yegQ at 969.565 kb on - strand, within yegQ at 969.635 kb on + strand, within yegQ at 969.711 kb on + strand, within yegQ at 969.742 kb on + strand, within yegQ at 969.742 kb on + strand, within yegQ at 969.742 kb on + strand, within yegQ at 969.742 kb on + strand, within yegQ at 969.743 kb on - strand, within yegQ at 969.744 kb on + strand, within yegQ at 969.745 kb on - strand, within yegQ at 969.745 kb on - strand, within yegQ at 969.745 kb on - strand, within yegQ at 969.775 kb on + strand, within yegQ at 969.775 kb on + strand, within yegQ at 969.775 kb on + strand, within yegQ at 969.775 kb on + strand, within yegQ at 969.775 kb on + strand, within yegQ at 969.775 kb on + strand, within yegQ at 969.776 kb on - strand, within yegQ at 969.776 kb on - strand, within yegQ at 969.776 kb on - strand, within yegQ at 969.776 kb on - strand, within yegQ at 969.776 kb on - strand, within yegQ at 969.776 kb on - strand, within yegQ at 969.815 kb on + strand, within yegQ at 969.816 kb on - strand, within yegQ at 969.816 kb on - strand, within yegQ at 969.867 kb on + strand, within yegQ at 969.867 kb on + strand, within yegQ at 969.878 kb on - strand, within yegQ at 969.880 kb on + strand, within yegQ at 969.880 kb on + strand, within yegQ at 969.881 kb on - strand, within yegQ at 969.991 kb on + strand, within yegQ at 969.991 kb on + strand, within yegQ at 969.992 kb on - strand, within yegQ at 969.993 kb on + strand, within yegQ at 970.030 kb on + strand, within yegQ at 970.039 kb on + strand, within yegQ at 970.040 kb on - strand, within yegQ at 970.040 kb on - strand, within yegQ at 970.045 kb on + strand, within yegQ at 970.227 kb on + strand at 970.252 kb on + strand at 970.252 kb on + strand at 970.254 kb on + strand at 970.254 kb on + strand at 970.254 kb on + strand at 970.255 kb on - strand at 970.255 kb on - strand at 970.311 kb on + strand at 970.312 kb on - strand at 970.329 kb on + strand at 970.347 kb on + strand at 970.355 kb on + strand at 970.404 kb on + strand at 970.464 kb on + strand at 970.464 kb on + strand at 970.573 kb on + strand at 970.574 kb on - strand at 970.574 kb on - strand at 970.625 kb on - strand at 970.629 kb on - strand at 970.629 kb on - strand at 970.629 kb on - strand at 970.629 kb on - strand at 970.639 kb on - strand at 970.704 kb on - strand, within ogrK at 970.704 kb on - strand, within ogrK at 970.722 kb on - strand, within ogrK at 970.767 kb on - strand, within ogrK at 970.791 kb on + strand, within ogrK at 970.792 kb on - strand, within ogrK at 970.982 kb on - strand at 971.025 kb on + strand at 971.025 kb on + strand at 971.026 kb on - strand at 971.026 kb on - strand at 971.051 kb on - strand, within MCAODC_20790 at 971.093 kb on + strand, within MCAODC_20790 at 971.094 kb on - strand, within MCAODC_20790 at 971.097 kb on + strand, within MCAODC_20790 at 971.098 kb on - strand, within MCAODC_20790 at 971.098 kb on - strand, within MCAODC_20790 at 971.098 kb on - strand, within MCAODC_20790 at 971.098 kb on - strand, within MCAODC_20790 at 971.201 kb on + strand, within MCAODC_20790 at 971.204 kb on - strand, within MCAODC_20790 at 971.246 kb on + strand, within MCAODC_20790 at 971.246 kb on + strand, within MCAODC_20790 at 971.246 kb on + strand, within MCAODC_20790 at 971.246 kb on + strand, within MCAODC_20790 at 971.246 kb on + strand, within MCAODC_20790 at 971.246 kb on + strand, within MCAODC_20790 at 971.247 kb on - strand, within MCAODC_20790 at 971.247 kb on - strand, within MCAODC_20790 at 971.247 kb on - strand, within MCAODC_20790 at 971.247 kb on - strand, within MCAODC_20790 at 971.247 kb on - strand, within MCAODC_20790
Per-strain Table
Position Strand Gene LocusTag Fraction EV240 remove 968,167 - baeR MCAODC_20765 0.79 -0.9 968,176 - baeR MCAODC_20765 0.80 -0.5 968,183 - baeR MCAODC_20765 0.81 +0.1 968,186 - baeR MCAODC_20765 0.81 -0.1 968,195 + baeR MCAODC_20765 0.82 +1.1 968,196 - baeR MCAODC_20765 0.83 -0.0 968,213 + baeR MCAODC_20765 0.85 +0.7 968,214 - baeR MCAODC_20765 0.85 +1.4 968,261 + -0.5 968,261 + -1.8 968,262 - -1.0 968,334 + +0.3 968,335 - -0.7 968,335 - -0.9 968,380 - +1.1 968,409 - -1.6 968,470 + -0.5 968,470 + -1.0 968,548 - yegP MCAODC_20770 0.11 -0.1 968,568 - yegP MCAODC_20770 0.17 -0.5 968,608 + yegP MCAODC_20770 0.29 -0.1 968,608 + yegP MCAODC_20770 0.29 -0.5 968,608 + yegP MCAODC_20770 0.29 -0.2 968,609 - yegP MCAODC_20770 0.29 +0.1 968,609 - yegP MCAODC_20770 0.29 -0.4 968,677 + yegP MCAODC_20770 0.50 +0.1 968,678 - yegP MCAODC_20770 0.50 -0.8 968,761 + yegP MCAODC_20770 0.75 +0.0 968,761 + yegP MCAODC_20770 0.75 +0.4 968,761 + yegP MCAODC_20770 0.75 -0.0 968,761 + yegP MCAODC_20770 0.75 +0.2 968,762 - yegP MCAODC_20770 0.75 +0.7 968,762 - yegP MCAODC_20770 0.75 +1.2 968,842 + +2.4 968,843 - -0.1 968,846 + +0.1 968,846 + -1.3 968,846 + -0.5 968,921 - +0.3 968,991 + -1.4 968,991 + -1.7 968,992 - +1.0 968,998 - +0.5 969,073 + -1.3 969,178 + yegQ MCAODC_20775 0.14 -0.2 969,273 + yegQ MCAODC_20775 0.21 +0.1 969,274 - yegQ MCAODC_20775 0.21 +0.1 969,509 - yegQ MCAODC_20775 0.38 -2.3 969,536 - yegQ MCAODC_20775 0.40 +1.9 969,537 + yegQ MCAODC_20775 0.40 -0.5 969,564 + yegQ MCAODC_20775 0.42 -1.2 969,565 - yegQ MCAODC_20775 0.42 -0.6 969,635 + yegQ MCAODC_20775 0.47 +0.7 969,711 + yegQ MCAODC_20775 0.53 +0.4 969,742 + yegQ MCAODC_20775 0.55 -0.9 969,742 + yegQ MCAODC_20775 0.55 +0.9 969,742 + yegQ MCAODC_20775 0.55 +0.1 969,742 + yegQ MCAODC_20775 0.55 -2.0 969,743 - yegQ MCAODC_20775 0.55 -1.6 969,744 + yegQ MCAODC_20775 0.55 +0.5 969,745 - yegQ MCAODC_20775 0.55 +0.1 969,745 - yegQ MCAODC_20775 0.55 -0.7 969,745 - yegQ MCAODC_20775 0.55 +0.3 969,775 + yegQ MCAODC_20775 0.57 -1.0 969,775 + yegQ MCAODC_20775 0.57 +0.3 969,775 + yegQ MCAODC_20775 0.57 -0.1 969,775 + yegQ MCAODC_20775 0.57 -0.5 969,775 + yegQ MCAODC_20775 0.57 -0.1 969,775 + yegQ MCAODC_20775 0.57 +0.2 969,776 - yegQ MCAODC_20775 0.58 -1.1 969,776 - yegQ MCAODC_20775 0.58 -0.7 969,776 - yegQ MCAODC_20775 0.58 -1.0 969,776 - yegQ MCAODC_20775 0.58 -1.6 969,776 - yegQ MCAODC_20775 0.58 -0.4 969,776 - yegQ MCAODC_20775 0.58 +0.1 969,815 + yegQ MCAODC_20775 0.60 -1.5 969,816 - yegQ MCAODC_20775 0.60 -0.5 969,816 - yegQ MCAODC_20775 0.60 +0.4 969,867 + yegQ MCAODC_20775 0.64 -0.0 969,867 + yegQ MCAODC_20775 0.64 +0.5 969,878 - yegQ MCAODC_20775 0.65 +0.4 969,880 + yegQ MCAODC_20775 0.65 -1.7 969,880 + yegQ MCAODC_20775 0.65 -0.3 969,881 - yegQ MCAODC_20775 0.65 +2.2 969,991 + yegQ MCAODC_20775 0.73 +0.4 969,991 + yegQ MCAODC_20775 0.73 -1.1 969,992 - yegQ MCAODC_20775 0.73 -0.6 969,993 + yegQ MCAODC_20775 0.73 -0.7 970,030 + yegQ MCAODC_20775 0.76 +1.7 970,039 + yegQ MCAODC_20775 0.77 -0.4 970,040 - yegQ MCAODC_20775 0.77 +0.0 970,040 - yegQ MCAODC_20775 0.77 +0.3 970,045 + yegQ MCAODC_20775 0.77 -1.5 970,227 + +0.0 970,252 + -0.1 970,252 + -0.7 970,254 + -1.1 970,254 + -0.1 970,254 + -1.6 970,255 - +1.7 970,255 - +1.1 970,311 + -0.3 970,312 - -1.7 970,329 + +1.2 970,347 + -0.6 970,355 + +1.5 970,404 + -0.1 970,464 + +0.2 970,464 + +0.2 970,573 + -0.3 970,574 - -0.7 970,574 - +0.2 970,625 - -1.0 970,629 - -0.7 970,629 - -0.2 970,629 - -0.1 970,629 - -1.1 970,639 - +1.0 970,704 - ogrK MCAODC_20785 0.35 -0.5 970,704 - ogrK MCAODC_20785 0.35 -2.0 970,722 - ogrK MCAODC_20785 0.43 -0.5 970,767 - ogrK MCAODC_20785 0.64 -1.0 970,791 + ogrK MCAODC_20785 0.75 -0.1 970,792 - ogrK MCAODC_20785 0.75 -2.1 970,982 - -0.1 971,025 + +0.1 971,025 + +1.3 971,026 - +0.6 971,026 - -0.9 971,051 - MCAODC_20790 0.11 +0.7 971,093 + MCAODC_20790 0.14 -0.0 971,094 - MCAODC_20790 0.14 +0.5 971,097 + MCAODC_20790 0.15 +0.1 971,098 - MCAODC_20790 0.15 +0.5 971,098 - MCAODC_20790 0.15 +0.7 971,098 - MCAODC_20790 0.15 -1.2 971,098 - MCAODC_20790 0.15 +0.9 971,201 + MCAODC_20790 0.24 -0.1 971,204 - MCAODC_20790 0.24 -1.0 971,246 + MCAODC_20790 0.27 +0.5 971,246 + MCAODC_20790 0.27 -0.1 971,246 + MCAODC_20790 0.27 -0.3 971,246 + MCAODC_20790 0.27 +0.1 971,246 + MCAODC_20790 0.27 +1.7 971,246 + MCAODC_20790 0.27 -1.2 971,247 - MCAODC_20790 0.27 +0.3 971,247 - MCAODC_20790 0.27 -2.5 971,247 - MCAODC_20790 0.27 -0.5 971,247 - MCAODC_20790 0.27 +0.1 971,247 - MCAODC_20790 0.27 +3.7
Or see this region's nucleotide sequence