Experiment: WM_Bas68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fbp and yjfF are separated by 32 nucleotides yjfF and ytfT overlap by 14 nucleotides
MCAODC_02450: fbp - class 1 fructose-bisphosphatase, at 502,993 to 503,991
fbp
MCAODC_02455: yjfF - sugar ABC transporter permease YjfF, at 504,024 to 505,019
yjfF
MCAODC_02460: ytfT - Galactofuranose transporter permease protein YtfT, at 505,006 to 506,028
ytfT
Position (kb) 504
505
506 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 503.078 kb on + strand at 503.079 kb on - strand at 503.098 kb on - strand, within fbp at 503.235 kb on + strand, within fbp at 503.305 kb on + strand, within fbp at 503.305 kb on + strand, within fbp at 503.306 kb on - strand, within fbp at 503.306 kb on - strand, within fbp at 503.383 kb on + strand, within fbp at 503.384 kb on - strand, within fbp at 503.394 kb on + strand, within fbp at 503.394 kb on + strand, within fbp at 503.395 kb on - strand, within fbp at 503.395 kb on - strand, within fbp at 503.473 kb on + strand, within fbp at 503.473 kb on + strand, within fbp at 503.473 kb on + strand, within fbp at 503.473 kb on + strand, within fbp at 503.497 kb on + strand, within fbp at 503.497 kb on + strand, within fbp at 503.497 kb on + strand, within fbp at 503.526 kb on + strand, within fbp at 503.526 kb on + strand, within fbp at 503.530 kb on + strand, within fbp at 503.530 kb on + strand, within fbp at 503.530 kb on + strand, within fbp at 503.599 kb on + strand, within fbp at 503.599 kb on + strand, within fbp at 503.600 kb on - strand, within fbp at 503.620 kb on + strand, within fbp at 503.620 kb on + strand, within fbp at 503.621 kb on - strand, within fbp at 503.625 kb on + strand, within fbp at 503.625 kb on + strand, within fbp at 503.625 kb on + strand, within fbp at 503.625 kb on + strand, within fbp at 503.625 kb on + strand, within fbp at 503.626 kb on - strand, within fbp at 503.650 kb on + strand, within fbp at 503.650 kb on + strand, within fbp at 503.650 kb on + strand, within fbp at 503.676 kb on + strand, within fbp at 503.698 kb on - strand, within fbp at 503.698 kb on - strand, within fbp at 503.698 kb on - strand, within fbp at 503.698 kb on - strand, within fbp at 503.707 kb on + strand, within fbp at 503.707 kb on + strand, within fbp at 503.708 kb on - strand, within fbp at 503.710 kb on - strand, within fbp at 503.757 kb on + strand, within fbp at 503.813 kb on - strand, within fbp at 503.880 kb on + strand, within fbp at 503.881 kb on - strand, within fbp at 503.881 kb on - strand, within fbp at 503.889 kb on + strand, within fbp at 503.889 kb on + strand, within fbp at 503.890 kb on - strand, within fbp at 503.943 kb on + strand at 503.944 kb on - strand at 503.944 kb on - strand at 503.967 kb on + strand at 504.099 kb on + strand at 504.100 kb on - strand at 504.174 kb on + strand, within yjfF at 504.175 kb on - strand, within yjfF at 504.175 kb on - strand, within yjfF at 504.175 kb on - strand, within yjfF at 504.178 kb on + strand, within yjfF at 504.178 kb on + strand, within yjfF at 504.178 kb on + strand, within yjfF at 504.178 kb on + strand, within yjfF at 504.179 kb on - strand, within yjfF at 504.179 kb on - strand, within yjfF at 504.179 kb on - strand, within yjfF at 504.222 kb on + strand, within yjfF at 504.223 kb on - strand, within yjfF at 504.226 kb on - strand, within yjfF at 504.226 kb on - strand, within yjfF at 504.226 kb on - strand, within yjfF at 504.226 kb on - strand, within yjfF at 504.298 kb on - strand, within yjfF at 504.377 kb on + strand, within yjfF at 504.377 kb on + strand, within yjfF at 504.378 kb on - strand, within yjfF at 504.378 kb on - strand, within yjfF at 504.378 kb on - strand, within yjfF at 504.378 kb on - strand, within yjfF at 504.378 kb on - strand, within yjfF at 504.378 kb on - strand, within yjfF at 504.379 kb on + strand, within yjfF at 504.379 kb on + strand, within yjfF at 504.379 kb on + strand, within yjfF at 504.380 kb on - strand, within yjfF at 504.380 kb on - strand, within yjfF at 504.389 kb on + strand, within yjfF at 504.389 kb on + strand, within yjfF at 504.390 kb on - strand, within yjfF at 504.451 kb on + strand, within yjfF at 504.452 kb on - strand, within yjfF at 504.452 kb on - strand, within yjfF at 504.489 kb on + strand, within yjfF at 504.489 kb on + strand, within yjfF at 504.534 kb on + strand, within yjfF at 504.534 kb on + strand, within yjfF at 504.534 kb on + strand, within yjfF at 504.535 kb on - strand, within yjfF at 504.535 kb on - strand, within yjfF at 504.583 kb on + strand, within yjfF at 504.625 kb on + strand, within yjfF at 504.663 kb on - strand, within yjfF at 504.663 kb on - strand, within yjfF at 504.663 kb on - strand, within yjfF at 504.668 kb on + strand, within yjfF at 504.668 kb on + strand, within yjfF at 504.669 kb on - strand, within yjfF at 504.669 kb on - strand, within yjfF at 504.669 kb on - strand, within yjfF at 504.707 kb on + strand, within yjfF at 504.707 kb on + strand, within yjfF at 504.909 kb on - strand, within yjfF at 504.964 kb on + strand at 504.964 kb on + strand at 505.015 kb on - strand at 505.036 kb on - strand at 505.036 kb on - strand at 505.048 kb on - strand at 505.158 kb on + strand, within ytfT at 505.158 kb on + strand, within ytfT at 505.159 kb on - strand, within ytfT at 505.186 kb on + strand, within ytfT at 505.191 kb on + strand, within ytfT at 505.191 kb on + strand, within ytfT at 505.191 kb on + strand, within ytfT at 505.192 kb on - strand, within ytfT at 505.258 kb on + strand, within ytfT at 505.344 kb on - strand, within ytfT at 505.344 kb on - strand, within ytfT at 505.348 kb on - strand, within ytfT at 505.348 kb on - strand, within ytfT at 505.348 kb on - strand, within ytfT at 505.348 kb on - strand, within ytfT at 505.651 kb on + strand, within ytfT at 505.651 kb on + strand, within ytfT at 505.652 kb on - strand, within ytfT at 505.696 kb on + strand, within ytfT at 505.816 kb on - strand, within ytfT at 505.816 kb on - strand, within ytfT
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas68 remove 503,078 + -2.6 503,079 - +0.1 503,098 - fbp MCAODC_02450 0.11 -1.0 503,235 + fbp MCAODC_02450 0.24 -0.4 503,305 + fbp MCAODC_02450 0.31 -0.7 503,305 + fbp MCAODC_02450 0.31 +0.9 503,306 - fbp MCAODC_02450 0.31 +0.7 503,306 - fbp MCAODC_02450 0.31 +1.2 503,383 + fbp MCAODC_02450 0.39 +0.0 503,384 - fbp MCAODC_02450 0.39 +0.1 503,394 + fbp MCAODC_02450 0.40 -1.2 503,394 + fbp MCAODC_02450 0.40 -0.2 503,395 - fbp MCAODC_02450 0.40 -2.4 503,395 - fbp MCAODC_02450 0.40 +0.7 503,473 + fbp MCAODC_02450 0.48 -0.4 503,473 + fbp MCAODC_02450 0.48 -0.1 503,473 + fbp MCAODC_02450 0.48 +1.3 503,473 + fbp MCAODC_02450 0.48 +0.4 503,497 + fbp MCAODC_02450 0.50 +1.2 503,497 + fbp MCAODC_02450 0.50 +2.5 503,497 + fbp MCAODC_02450 0.50 -0.7 503,526 + fbp MCAODC_02450 0.53 +1.3 503,526 + fbp MCAODC_02450 0.53 +0.0 503,530 + fbp MCAODC_02450 0.54 -3.7 503,530 + fbp MCAODC_02450 0.54 -0.0 503,530 + fbp MCAODC_02450 0.54 +1.1 503,599 + fbp MCAODC_02450 0.61 -0.2 503,599 + fbp MCAODC_02450 0.61 +0.1 503,600 - fbp MCAODC_02450 0.61 -0.6 503,620 + fbp MCAODC_02450 0.63 -1.7 503,620 + fbp MCAODC_02450 0.63 +0.6 503,621 - fbp MCAODC_02450 0.63 +0.6 503,625 + fbp MCAODC_02450 0.63 -0.2 503,625 + fbp MCAODC_02450 0.63 +0.1 503,625 + fbp MCAODC_02450 0.63 -0.3 503,625 + fbp MCAODC_02450 0.63 -0.8 503,625 + fbp MCAODC_02450 0.63 -1.3 503,626 - fbp MCAODC_02450 0.63 -1.1 503,650 + fbp MCAODC_02450 0.66 -0.9 503,650 + fbp MCAODC_02450 0.66 +0.0 503,650 + fbp MCAODC_02450 0.66 +2.3 503,676 + fbp MCAODC_02450 0.68 +0.1 503,698 - fbp MCAODC_02450 0.71 -0.3 503,698 - fbp MCAODC_02450 0.71 +1.5 503,698 - fbp MCAODC_02450 0.71 +0.0 503,698 - fbp MCAODC_02450 0.71 -1.1 503,707 + fbp MCAODC_02450 0.71 -1.6 503,707 + fbp MCAODC_02450 0.71 +0.3 503,708 - fbp MCAODC_02450 0.72 -0.3 503,710 - fbp MCAODC_02450 0.72 -0.2 503,757 + fbp MCAODC_02450 0.76 +0.4 503,813 - fbp MCAODC_02450 0.82 -0.5 503,880 + fbp MCAODC_02450 0.89 -1.5 503,881 - fbp MCAODC_02450 0.89 +1.5 503,881 - fbp MCAODC_02450 0.89 +3.5 503,889 + fbp MCAODC_02450 0.90 -0.7 503,889 + fbp MCAODC_02450 0.90 +1.4 503,890 - fbp MCAODC_02450 0.90 -1.3 503,943 + -0.8 503,944 - -0.8 503,944 - +2.0 503,967 + +1.0 504,099 + +0.1 504,100 - +0.5 504,174 + yjfF MCAODC_02455 0.15 +0.5 504,175 - yjfF MCAODC_02455 0.15 -0.9 504,175 - yjfF MCAODC_02455 0.15 -1.6 504,175 - yjfF MCAODC_02455 0.15 -0.5 504,178 + yjfF MCAODC_02455 0.15 -0.4 504,178 + yjfF MCAODC_02455 0.15 +0.4 504,178 + yjfF MCAODC_02455 0.15 +1.8 504,178 + yjfF MCAODC_02455 0.15 +0.7 504,179 - yjfF MCAODC_02455 0.16 -1.0 504,179 - yjfF MCAODC_02455 0.16 +0.0 504,179 - yjfF MCAODC_02455 0.16 -2.2 504,222 + yjfF MCAODC_02455 0.20 +0.1 504,223 - yjfF MCAODC_02455 0.20 +1.2 504,226 - yjfF MCAODC_02455 0.20 -0.3 504,226 - yjfF MCAODC_02455 0.20 -1.0 504,226 - yjfF MCAODC_02455 0.20 +1.4 504,226 - yjfF MCAODC_02455 0.20 +0.2 504,298 - yjfF MCAODC_02455 0.28 +1.3 504,377 + yjfF MCAODC_02455 0.35 -0.4 504,377 + yjfF MCAODC_02455 0.35 -0.5 504,378 - yjfF MCAODC_02455 0.36 +1.5 504,378 - yjfF MCAODC_02455 0.36 -0.1 504,378 - yjfF MCAODC_02455 0.36 +0.5 504,378 - yjfF MCAODC_02455 0.36 +0.1 504,378 - yjfF MCAODC_02455 0.36 -0.2 504,378 - yjfF MCAODC_02455 0.36 +1.1 504,379 + yjfF MCAODC_02455 0.36 +0.0 504,379 + yjfF MCAODC_02455 0.36 +1.1 504,379 + yjfF MCAODC_02455 0.36 +0.2 504,380 - yjfF MCAODC_02455 0.36 -0.0 504,380 - yjfF MCAODC_02455 0.36 +0.2 504,389 + yjfF MCAODC_02455 0.37 -0.2 504,389 + yjfF MCAODC_02455 0.37 +0.3 504,390 - yjfF MCAODC_02455 0.37 -0.6 504,451 + yjfF MCAODC_02455 0.43 -0.9 504,452 - yjfF MCAODC_02455 0.43 +0.3 504,452 - yjfF MCAODC_02455 0.43 -0.4 504,489 + yjfF MCAODC_02455 0.47 +1.3 504,489 + yjfF MCAODC_02455 0.47 +0.3 504,534 + yjfF MCAODC_02455 0.51 +1.0 504,534 + yjfF MCAODC_02455 0.51 +0.8 504,534 + yjfF MCAODC_02455 0.51 -0.2 504,535 - yjfF MCAODC_02455 0.51 +0.5 504,535 - yjfF MCAODC_02455 0.51 +1.6 504,583 + yjfF MCAODC_02455 0.56 +1.6 504,625 + yjfF MCAODC_02455 0.60 +0.3 504,663 - yjfF MCAODC_02455 0.64 +0.4 504,663 - yjfF MCAODC_02455 0.64 +0.1 504,663 - yjfF MCAODC_02455 0.64 +1.3 504,668 + yjfF MCAODC_02455 0.65 +2.1 504,668 + yjfF MCAODC_02455 0.65 -1.5 504,669 - yjfF MCAODC_02455 0.65 -1.0 504,669 - yjfF MCAODC_02455 0.65 +0.9 504,669 - yjfF MCAODC_02455 0.65 +0.0 504,707 + yjfF MCAODC_02455 0.69 +1.0 504,707 + yjfF MCAODC_02455 0.69 +1.6 504,909 - yjfF MCAODC_02455 0.89 +0.6 504,964 + +0.7 504,964 + +1.3 505,015 - +0.3 505,036 - -0.5 505,036 - +0.7 505,048 - +1.3 505,158 + ytfT MCAODC_02460 0.15 +0.1 505,158 + ytfT MCAODC_02460 0.15 -0.1 505,159 - ytfT MCAODC_02460 0.15 -1.3 505,186 + ytfT MCAODC_02460 0.18 -0.8 505,191 + ytfT MCAODC_02460 0.18 -0.3 505,191 + ytfT MCAODC_02460 0.18 -0.4 505,191 + ytfT MCAODC_02460 0.18 -2.3 505,192 - ytfT MCAODC_02460 0.18 +1.0 505,258 + ytfT MCAODC_02460 0.25 +1.1 505,344 - ytfT MCAODC_02460 0.33 -0.0 505,344 - ytfT MCAODC_02460 0.33 -0.5 505,348 - ytfT MCAODC_02460 0.33 +0.8 505,348 - ytfT MCAODC_02460 0.33 +1.6 505,348 - ytfT MCAODC_02460 0.33 -0.4 505,348 - ytfT MCAODC_02460 0.33 +0.7 505,651 + ytfT MCAODC_02460 0.63 +2.4 505,651 + ytfT MCAODC_02460 0.63 -0.3 505,652 - ytfT MCAODC_02460 0.63 +0.3 505,696 + ytfT MCAODC_02460 0.67 -0.0 505,816 - ytfT MCAODC_02460 0.79 -0.8 505,816 - ytfT MCAODC_02460 0.79 +1.1
Or see this region's nucleotide sequence