Strain Fitness in Pseudomonas sp. RS175 around PFR28_00262

Experiment: 2-Keto-D-gluconic hemicalcium salt (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00260 and PFR28_00261 are separated by 59 nucleotidesPFR28_00261 and PFR28_00262 overlap by 6 nucleotidesPFR28_00262 and PFR28_00263 are separated by 166 nucleotidesPFR28_00263 and PFR28_00264 overlap by 1 nucleotides PFR28_00260: PFR28_00260 - hypothetical protein, at 287,162 to 288,364 _00260 PFR28_00261: PFR28_00261 - hypothetical protein, at 288,424 to 288,969 _00261 PFR28_00262: PFR28_00262 - hypothetical protein, at 288,964 to 290,130 _00262 PFR28_00263: PFR28_00263 - HTH-type transcriptional activator RhaR, at 290,297 to 291,130 _00263 PFR28_00264: PFR28_00264 - Sensor histidine kinase RcsC, at 291,130 to 293,532 _00264 Position (kb) 288 289 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 287.987 kb on + strand, within PFR28_00260at 287.987 kb on + strand, within PFR28_00260at 287.987 kb on + strand, within PFR28_00260at 287.987 kb on + strand, within PFR28_00260at 287.987 kb on + strand, within PFR28_00260at 287.987 kb on + strand, within PFR28_00260at 287.988 kb on - strand, within PFR28_00260at 287.988 kb on - strand, within PFR28_00260at 287.988 kb on - strand, within PFR28_00260at 288.075 kb on - strand, within PFR28_00260at 288.075 kb on - strand, within PFR28_00260at 288.278 kb on + strandat 288.296 kb on + strandat 288.296 kb on + strandat 288.296 kb on + strandat 288.298 kb on + strandat 288.298 kb on + strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.299 kb on - strandat 288.320 kb on - strandat 288.362 kb on + strandat 288.362 kb on + strandat 288.362 kb on + strandat 288.362 kb on + strandat 288.363 kb on - strandat 288.363 kb on - strandat 288.363 kb on - strandat 288.363 kb on - strandat 288.401 kb on - strandat 288.401 kb on - strandat 288.417 kb on + strandat 288.417 kb on + strandat 288.417 kb on + strandat 288.418 kb on - strandat 288.418 kb on - strandat 288.418 kb on - strandat 288.680 kb on - strand, within PFR28_00261at 288.781 kb on + strand, within PFR28_00261at 288.851 kb on + strand, within PFR28_00261at 288.852 kb on - strand, within PFR28_00261at 288.929 kb on - strandat 288.929 kb on - strandat 288.929 kb on - strandat 288.965 kb on + strandat 288.966 kb on - strandat 288.966 kb on - strandat 288.966 kb on - strandat 288.967 kb on + strandat 288.967 kb on + strandat 289.085 kb on + strand, within PFR28_00262at 289.085 kb on + strand, within PFR28_00262at 289.085 kb on + strand, within PFR28_00262at 289.085 kb on + strand, within PFR28_00262at 289.096 kb on + strand, within PFR28_00262at 289.148 kb on + strand, within PFR28_00262at 289.148 kb on + strand, within PFR28_00262at 289.149 kb on - strand, within PFR28_00262at 289.149 kb on - strand, within PFR28_00262at 289.176 kb on - strand, within PFR28_00262at 289.176 kb on - strand, within PFR28_00262at 289.244 kb on - strand, within PFR28_00262at 289.258 kb on + strand, within PFR28_00262at 289.258 kb on + strand, within PFR28_00262at 289.258 kb on + strand, within PFR28_00262at 289.259 kb on - strand, within PFR28_00262at 289.259 kb on - strand, within PFR28_00262at 289.259 kb on - strand, within PFR28_00262at 289.259 kb on - strand, within PFR28_00262at 289.327 kb on + strand, within PFR28_00262at 289.328 kb on - strand, within PFR28_00262at 289.487 kb on + strand, within PFR28_00262at 289.501 kb on + strand, within PFR28_00262at 289.501 kb on + strand, within PFR28_00262at 289.501 kb on + strand, within PFR28_00262at 289.501 kb on + strand, within PFR28_00262at 289.502 kb on - strand, within PFR28_00262at 289.502 kb on - strand, within PFR28_00262at 289.502 kb on - strand, within PFR28_00262at 289.502 kb on - strand, within PFR28_00262at 289.502 kb on - strand, within PFR28_00262at 289.502 kb on - strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.505 kb on + strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.506 kb on - strand, within PFR28_00262at 289.541 kb on + strand, within PFR28_00262at 289.542 kb on - strand, within PFR28_00262at 289.561 kb on + strand, within PFR28_00262at 289.561 kb on + strand, within PFR28_00262at 289.561 kb on + strand, within PFR28_00262at 289.562 kb on - strand, within PFR28_00262at 289.641 kb on + strand, within PFR28_00262at 289.642 kb on - strand, within PFR28_00262at 289.682 kb on + strand, within PFR28_00262at 289.682 kb on + strand, within PFR28_00262at 289.682 kb on + strand, within PFR28_00262at 289.682 kb on + strand, within PFR28_00262at 289.686 kb on + strand, within PFR28_00262at 289.686 kb on + strand, within PFR28_00262at 289.687 kb on - strand, within PFR28_00262at 289.687 kb on - strand, within PFR28_00262at 289.687 kb on - strand, within PFR28_00262at 289.687 kb on - strand, within PFR28_00262at 289.719 kb on + strand, within PFR28_00262at 289.719 kb on + strand, within PFR28_00262at 289.719 kb on + strand, within PFR28_00262at 289.720 kb on - strand, within PFR28_00262at 289.720 kb on - strand, within PFR28_00262at 290.011 kb on + strand, within PFR28_00262at 290.011 kb on + strand, within PFR28_00262at 290.012 kb on - strand, within PFR28_00262at 290.013 kb on + strand, within PFR28_00262at 290.096 kb on + strandat 290.167 kb on + strandat 290.204 kb on + strandat 290.204 kb on + strandat 290.204 kb on + strandat 290.204 kb on + strandat 290.205 kb on - strandat 290.205 kb on - strandat 290.205 kb on - strandat 290.205 kb on - strandat 290.206 kb on + strandat 290.281 kb on + strandat 290.282 kb on - strandat 290.296 kb on + strandat 290.296 kb on + strandat 290.296 kb on + strandat 290.297 kb on - strandat 290.439 kb on + strand, within PFR28_00263at 290.469 kb on - strand, within PFR28_00263at 290.657 kb on + strand, within PFR28_00263at 290.657 kb on + strand, within PFR28_00263at 290.657 kb on + strand, within PFR28_00263at 290.658 kb on - strand, within PFR28_00263at 290.658 kb on - strand, within PFR28_00263at 290.658 kb on - strand, within PFR28_00263at 290.658 kb on - strand, within PFR28_00263at 290.698 kb on + strand, within PFR28_00263at 290.927 kb on + strand, within PFR28_00263at 290.928 kb on - strand, within PFR28_00263at 290.930 kb on - strand, within PFR28_00263at 290.930 kb on - strand, within PFR28_00263at 291.106 kb on + strandat 291.106 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Keto-D-gluconic hemicalcium salt (C) 10 mM
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287,987 + PFR28_00260 0.69 -1.2
287,987 + PFR28_00260 0.69 -0.5
287,987 + PFR28_00260 0.69 +1.4
287,987 + PFR28_00260 0.69 -0.7
287,987 + PFR28_00260 0.69 -0.6
287,987 + PFR28_00260 0.69 -0.2
287,988 - PFR28_00260 0.69 -1.9
287,988 - PFR28_00260 0.69 -0.1
287,988 - PFR28_00260 0.69 +0.0
288,075 - PFR28_00260 0.76 -0.2
288,075 - PFR28_00260 0.76 -1.2
288,278 + -0.2
288,296 + -0.1
288,296 + +0.2
288,296 + +1.5
288,298 + +0.4
288,298 + +1.0
288,299 - +0.4
288,299 - -0.9
288,299 - -1.8
288,299 - -3.6
288,299 - +1.1
288,299 - +0.3
288,299 - -1.0
288,299 - -0.5
288,320 - +0.2
288,362 + +0.4
288,362 + -0.2
288,362 + +0.8
288,362 + +0.5
288,363 - -0.9
288,363 - -0.2
288,363 - -0.4
288,363 - -1.3
288,401 - -0.7
288,401 - -0.1
288,417 + +1.3
288,417 + +1.3
288,417 + -0.1
288,418 - -0.1
288,418 - -0.8
288,418 - -0.2
288,680 - PFR28_00261 0.47 -0.8
288,781 + PFR28_00261 0.65 +0.3
288,851 + PFR28_00261 0.78 +1.5
288,852 - PFR28_00261 0.78 -0.4
288,929 - +0.2
288,929 - -0.8
288,929 - -1.1
288,965 + -1.9
288,966 - +0.4
288,966 - -3.6
288,966 - +0.3
288,967 + -0.5
288,967 + +2.0
289,085 + PFR28_00262 0.10 +0.9
289,085 + PFR28_00262 0.10 -0.9
289,085 + PFR28_00262 0.10 +2.3
289,085 + PFR28_00262 0.10 +0.8
289,096 + PFR28_00262 0.11 -0.1
289,148 + PFR28_00262 0.16 -1.2
289,148 + PFR28_00262 0.16 -0.4
289,149 - PFR28_00262 0.16 +1.1
289,149 - PFR28_00262 0.16 -2.0
289,176 - PFR28_00262 0.18 -0.3
289,176 - PFR28_00262 0.18 +0.9
289,244 - PFR28_00262 0.24 +0.4
289,258 + PFR28_00262 0.25 +0.2
289,258 + PFR28_00262 0.25 -1.0
289,258 + PFR28_00262 0.25 +0.2
289,259 - PFR28_00262 0.25 -0.3
289,259 - PFR28_00262 0.25 +1.8
289,259 - PFR28_00262 0.25 +0.6
289,259 - PFR28_00262 0.25 -0.7
289,327 + PFR28_00262 0.31 -1.3
289,328 - PFR28_00262 0.31 +2.1
289,487 + PFR28_00262 0.45 -0.3
289,501 + PFR28_00262 0.46 -0.8
289,501 + PFR28_00262 0.46 +1.1
289,501 + PFR28_00262 0.46 -0.1
289,501 + PFR28_00262 0.46 -0.4
289,502 - PFR28_00262 0.46 -2.8
289,502 - PFR28_00262 0.46 +0.1
289,502 - PFR28_00262 0.46 +2.6
289,502 - PFR28_00262 0.46 -0.1
289,502 - PFR28_00262 0.46 +0.3
289,502 - PFR28_00262 0.46 +0.8
289,505 + PFR28_00262 0.46 -0.1
289,505 + PFR28_00262 0.46 +0.9
289,505 + PFR28_00262 0.46 -0.8
289,505 + PFR28_00262 0.46 +1.0
289,505 + PFR28_00262 0.46 +0.6
289,505 + PFR28_00262 0.46 +0.9
289,505 + PFR28_00262 0.46 +0.2
289,505 + PFR28_00262 0.46 +0.1
289,505 + PFR28_00262 0.46 +0.5
289,505 + PFR28_00262 0.46 -1.7
289,505 + PFR28_00262 0.46 -1.5
289,506 - PFR28_00262 0.46 +0.6
289,506 - PFR28_00262 0.46 +2.5
289,506 - PFR28_00262 0.46 +0.6
289,506 - PFR28_00262 0.46 -1.5
289,506 - PFR28_00262 0.46 -0.0
289,506 - PFR28_00262 0.46 +1.5
289,506 - PFR28_00262 0.46 -2.1
289,506 - PFR28_00262 0.46 +0.7
289,506 - PFR28_00262 0.46 -0.1
289,541 + PFR28_00262 0.49 +1.6
289,542 - PFR28_00262 0.50 -0.2
289,561 + PFR28_00262 0.51 +0.7
289,561 + PFR28_00262 0.51 -1.3
289,561 + PFR28_00262 0.51 -2.2
289,562 - PFR28_00262 0.51 +0.0
289,641 + PFR28_00262 0.58 -0.5
289,642 - PFR28_00262 0.58 +0.6
289,682 + PFR28_00262 0.62 -1.2
289,682 + PFR28_00262 0.62 -0.5
289,682 + PFR28_00262 0.62 -0.4
289,682 + PFR28_00262 0.62 +0.1
289,686 + PFR28_00262 0.62 +1.5
289,686 + PFR28_00262 0.62 +1.0
289,687 - PFR28_00262 0.62 -0.8
289,687 - PFR28_00262 0.62 +0.8
289,687 - PFR28_00262 0.62 +0.2
289,687 - PFR28_00262 0.62 -0.1
289,719 + PFR28_00262 0.65 +0.1
289,719 + PFR28_00262 0.65 -2.0
289,719 + PFR28_00262 0.65 +0.0
289,720 - PFR28_00262 0.65 +0.1
289,720 - PFR28_00262 0.65 +0.9
290,011 + PFR28_00262 0.90 +0.2
290,011 + PFR28_00262 0.90 -0.7
290,012 - PFR28_00262 0.90 -0.1
290,013 + PFR28_00262 0.90 -0.9
290,096 + +0.1
290,167 + +1.2
290,204 + +0.4
290,204 + +0.5
290,204 + +0.5
290,204 + -0.8
290,205 - -0.8
290,205 - -0.6
290,205 - -0.1
290,205 - -0.1
290,206 + +1.5
290,281 + -0.4
290,282 - +1.8
290,296 + +0.5
290,296 + -0.3
290,296 + -0.6
290,297 - -0.1
290,439 + PFR28_00263 0.17 +0.9
290,469 - PFR28_00263 0.21 -1.1
290,657 + PFR28_00263 0.43 -0.2
290,657 + PFR28_00263 0.43 -2.1
290,657 + PFR28_00263 0.43 -0.3
290,658 - PFR28_00263 0.43 +0.0
290,658 - PFR28_00263 0.43 -1.4
290,658 - PFR28_00263 0.43 +1.2
290,658 - PFR28_00263 0.43 -0.0
290,698 + PFR28_00263 0.48 -1.0
290,927 + PFR28_00263 0.76 +0.1
290,928 - PFR28_00263 0.76 +0.1
290,930 - PFR28_00263 0.76 +1.3
290,930 - PFR28_00263 0.76 +0.1
291,106 + +0.3
291,106 + -0.2

Or see this region's nucleotide sequence