Strain Fitness in Pseudomonas sp. RS175 around PFR28_00059

Experiment: 2-Keto-D-gluconic hemicalcium salt (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00058 and PFR28_00059 are separated by 114 nucleotidesPFR28_00059 and PFR28_00060 overlap by 4 nucleotidesPFR28_00060 and PFR28_00061 overlap by 4 nucleotides PFR28_00058: PFR28_00058 - hypothetical protein, at 66,671 to 66,961 _00058 PFR28_00059: PFR28_00059 - hypothetical protein, at 67,076 to 69,886 _00059 PFR28_00060: PFR28_00060 - hypothetical protein, at 69,883 to 70,554 _00060 PFR28_00061: PFR28_00061 - Lactate utilization protein B, at 70,551 to 72,008 _00061 Position (kb) 67 68 69 70Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 66.090 kb on + strandat 66.091 kb on - strandat 66.144 kb on + strandat 66.625 kb on - strandat 66.625 kb on - strandat 66.625 kb on - strandat 66.682 kb on + strandat 66.941 kb on + strandat 66.941 kb on + strandat 66.941 kb on + strandat 66.942 kb on - strandat 66.942 kb on - strandat 66.942 kb on - strandat 66.997 kb on + strandat 66.997 kb on + strandat 66.997 kb on + strandat 66.998 kb on - strandat 66.998 kb on - strandat 67.000 kb on + strandat 67.000 kb on + strandat 67.001 kb on - strandat 67.001 kb on - strandat 67.067 kb on + strandat 67.067 kb on + strandat 67.077 kb on + strandat 67.078 kb on - strandat 67.113 kb on + strandat 67.113 kb on + strandat 67.150 kb on + strandat 67.288 kb on + strandat 67.459 kb on - strand, within PFR28_00059at 67.473 kb on - strand, within PFR28_00059at 67.473 kb on - strand, within PFR28_00059at 67.473 kb on - strand, within PFR28_00059at 67.524 kb on + strand, within PFR28_00059at 67.524 kb on + strand, within PFR28_00059at 67.525 kb on - strand, within PFR28_00059at 67.605 kb on + strand, within PFR28_00059at 67.606 kb on - strand, within PFR28_00059at 67.606 kb on - strand, within PFR28_00059at 67.707 kb on + strand, within PFR28_00059at 67.757 kb on + strand, within PFR28_00059at 67.757 kb on + strand, within PFR28_00059at 67.758 kb on - strand, within PFR28_00059at 67.758 kb on - strand, within PFR28_00059at 67.773 kb on + strand, within PFR28_00059at 67.773 kb on + strand, within PFR28_00059at 67.773 kb on + strand, within PFR28_00059at 67.773 kb on + strand, within PFR28_00059at 67.774 kb on - strand, within PFR28_00059at 68.014 kb on + strand, within PFR28_00059at 68.124 kb on + strand, within PFR28_00059at 68.124 kb on + strand, within PFR28_00059at 68.124 kb on + strand, within PFR28_00059at 68.125 kb on - strand, within PFR28_00059at 68.130 kb on + strand, within PFR28_00059at 68.192 kb on + strand, within PFR28_00059at 68.192 kb on + strand, within PFR28_00059at 68.533 kb on - strand, within PFR28_00059at 68.533 kb on - strand, within PFR28_00059at 68.625 kb on + strand, within PFR28_00059at 68.625 kb on + strand, within PFR28_00059at 68.625 kb on + strand, within PFR28_00059at 68.625 kb on + strand, within PFR28_00059at 68.626 kb on - strand, within PFR28_00059at 68.868 kb on - strand, within PFR28_00059at 68.933 kb on + strand, within PFR28_00059at 69.108 kb on + strand, within PFR28_00059at 69.108 kb on + strand, within PFR28_00059at 69.108 kb on + strand, within PFR28_00059at 69.108 kb on + strand, within PFR28_00059at 69.108 kb on + strand, within PFR28_00059at 69.108 kb on + strand, within PFR28_00059at 69.109 kb on - strand, within PFR28_00059at 69.109 kb on - strand, within PFR28_00059at 69.109 kb on - strand, within PFR28_00059at 69.221 kb on - strand, within PFR28_00059at 69.234 kb on + strand, within PFR28_00059at 69.235 kb on - strand, within PFR28_00059at 69.235 kb on - strand, within PFR28_00059at 69.238 kb on + strand, within PFR28_00059at 69.383 kb on + strand, within PFR28_00059at 69.383 kb on + strand, within PFR28_00059at 69.384 kb on - strand, within PFR28_00059at 69.384 kb on - strand, within PFR28_00059at 69.411 kb on + strand, within PFR28_00059at 69.412 kb on - strand, within PFR28_00059at 69.475 kb on + strand, within PFR28_00059at 69.476 kb on - strand, within PFR28_00059at 69.777 kb on + strandat 69.778 kb on - strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.854 kb on + strandat 69.855 kb on - strandat 69.855 kb on - strandat 69.855 kb on - strandat 69.855 kb on - strandat 69.855 kb on - strandat 69.855 kb on - strandat 69.855 kb on - strandat 70.037 kb on + strand, within PFR28_00060at 70.233 kb on - strand, within PFR28_00060at 70.242 kb on + strand, within PFR28_00060at 70.242 kb on + strand, within PFR28_00060at 70.242 kb on + strand, within PFR28_00060at 70.242 kb on + strand, within PFR28_00060at 70.243 kb on - strand, within PFR28_00060at 70.243 kb on - strand, within PFR28_00060at 70.243 kb on - strand, within PFR28_00060at 70.243 kb on - strand, within PFR28_00060at 70.243 kb on - strand, within PFR28_00060at 70.343 kb on - strand, within PFR28_00060at 70.343 kb on - strand, within PFR28_00060at 70.454 kb on + strand, within PFR28_00060at 70.454 kb on + strand, within PFR28_00060at 70.454 kb on + strand, within PFR28_00060at 70.454 kb on + strand, within PFR28_00060at 70.455 kb on - strand, within PFR28_00060at 70.455 kb on - strand, within PFR28_00060at 70.769 kb on - strand, within PFR28_00061

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Keto-D-gluconic hemicalcium salt (C) 10 mM
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66,090 + +0.2
66,091 - +0.3
66,144 + +0.1
66,625 - -1.5
66,625 - -1.0
66,625 - -0.8
66,682 + +1.7
66,941 + +0.5
66,941 + -3.8
66,941 + +0.0
66,942 - +0.3
66,942 - -0.1
66,942 - -1.6
66,997 + -0.7
66,997 + -1.3
66,997 + -1.3
66,998 - -0.1
66,998 - +0.1
67,000 + +0.5
67,000 + -0.4
67,001 - +0.3
67,001 - +0.7
67,067 + -0.4
67,067 + -1.8
67,077 + -2.3
67,078 - -1.0
67,113 + -1.0
67,113 + +0.1
67,150 + -0.8
67,288 + -0.8
67,459 - PFR28_00059 0.14 -0.6
67,473 - PFR28_00059 0.14 -0.8
67,473 - PFR28_00059 0.14 +0.7
67,473 - PFR28_00059 0.14 -1.6
67,524 + PFR28_00059 0.16 -0.1
67,524 + PFR28_00059 0.16 -0.0
67,525 - PFR28_00059 0.16 +0.3
67,605 + PFR28_00059 0.19 -0.3
67,606 - PFR28_00059 0.19 -1.2
67,606 - PFR28_00059 0.19 +0.0
67,707 + PFR28_00059 0.22 +0.1
67,757 + PFR28_00059 0.24 +0.1
67,757 + PFR28_00059 0.24 -0.4
67,758 - PFR28_00059 0.24 -0.9
67,758 - PFR28_00059 0.24 -2.0
67,773 + PFR28_00059 0.25 -0.4
67,773 + PFR28_00059 0.25 -1.7
67,773 + PFR28_00059 0.25 +0.4
67,773 + PFR28_00059 0.25 -1.0
67,774 - PFR28_00059 0.25 +0.0
68,014 + PFR28_00059 0.33 -0.2
68,124 + PFR28_00059 0.37 +0.4
68,124 + PFR28_00059 0.37 +0.8
68,124 + PFR28_00059 0.37 -1.3
68,125 - PFR28_00059 0.37 +0.3
68,130 + PFR28_00059 0.37 -2.1
68,192 + PFR28_00059 0.40 +0.1
68,192 + PFR28_00059 0.40 -0.9
68,533 - PFR28_00059 0.52 -1.7
68,533 - PFR28_00059 0.52 +0.3
68,625 + PFR28_00059 0.55 +0.1
68,625 + PFR28_00059 0.55 -0.4
68,625 + PFR28_00059 0.55 -1.3
68,625 + PFR28_00059 0.55 -2.1
68,626 - PFR28_00059 0.55 -2.9
68,868 - PFR28_00059 0.64 -4.0
68,933 + PFR28_00059 0.66 -0.6
69,108 + PFR28_00059 0.72 -1.1
69,108 + PFR28_00059 0.72 -1.1
69,108 + PFR28_00059 0.72 -0.4
69,108 + PFR28_00059 0.72 +0.2
69,108 + PFR28_00059 0.72 -0.4
69,108 + PFR28_00059 0.72 +0.5
69,109 - PFR28_00059 0.72 -1.4
69,109 - PFR28_00059 0.72 -1.2
69,109 - PFR28_00059 0.72 -1.1
69,221 - PFR28_00059 0.76 -0.1
69,234 + PFR28_00059 0.77 -1.3
69,235 - PFR28_00059 0.77 +0.6
69,235 - PFR28_00059 0.77 -1.1
69,238 + PFR28_00059 0.77 -0.4
69,383 + PFR28_00059 0.82 -0.2
69,383 + PFR28_00059 0.82 -1.8
69,384 - PFR28_00059 0.82 -3.1
69,384 - PFR28_00059 0.82 -0.6
69,411 + PFR28_00059 0.83 -1.3
69,412 - PFR28_00059 0.83 -1.5
69,475 + PFR28_00059 0.85 +0.1
69,476 - PFR28_00059 0.85 +0.5
69,777 + -0.8
69,778 - -0.6
69,854 + -0.4
69,854 + +0.4
69,854 + -0.7
69,854 + -0.0
69,854 + +0.8
69,854 + -2.0
69,854 + +2.1
69,854 + -0.9
69,855 - -1.0
69,855 - -0.5
69,855 - +1.6
69,855 - -1.4
69,855 - -0.5
69,855 - -0.5
69,855 - -1.2
70,037 + PFR28_00060 0.23 -0.7
70,233 - PFR28_00060 0.52 +0.6
70,242 + PFR28_00060 0.53 -1.5
70,242 + PFR28_00060 0.53 -1.5
70,242 + PFR28_00060 0.53 +1.0
70,242 + PFR28_00060 0.53 +0.2
70,243 - PFR28_00060 0.54 +1.2
70,243 - PFR28_00060 0.54 +0.7
70,243 - PFR28_00060 0.54 -0.9
70,243 - PFR28_00060 0.54 -0.7
70,243 - PFR28_00060 0.54 -0.1
70,343 - PFR28_00060 0.68 +0.2
70,343 - PFR28_00060 0.68 -1.4
70,454 + PFR28_00060 0.85 +0.7
70,454 + PFR28_00060 0.85 +1.0
70,454 + PFR28_00060 0.85 -0.7
70,454 + PFR28_00060 0.85 +0.2
70,455 - PFR28_00060 0.85 -1.0
70,455 - PFR28_00060 0.85 -0.4
70,769 - PFR28_00061 0.15 +0.0

Or see this region's nucleotide sequence