Strain Fitness in Pseudomonas sp. RS175 around PFR28_04847

Experiment: 2-Keto-D-gluconic hemicalcium salt (C) 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_04845 and PFR28_04846 are separated by 52 nucleotidesPFR28_04846 and PFR28_04847 overlap by 11 nucleotidesPFR28_04847 and PFR28_04848 are separated by 2 nucleotidesPFR28_04848 and PFR28_04849 are separated by 69 nucleotides PFR28_04845: PFR28_04845 - Trans-aconitate 2-methyltransferase, at 5,536,265 to 5,536,939 _04845 PFR28_04846: PFR28_04846 - D-methionine transport system permease protein MetI, at 5,536,992 to 5,537,636 _04846 PFR28_04847: PFR28_04847 - Methionine import ATP-binding protein MetN, at 5,537,626 to 5,538,750 _04847 PFR28_04848: PFR28_04848 - D-methionine-binding lipoprotein MetQ, at 5,538,753 to 5,539,562 _04848 PFR28_04849: PFR28_04849 - Dimethyl-sulfide monooxygenase, at 5,539,632 to 5,540,990 _04849 Position (kb) 5537 5538 5539Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5536.636 kb on + strand, within PFR28_04845at 5536.759 kb on + strand, within PFR28_04845at 5536.839 kb on + strand, within PFR28_04845at 5536.839 kb on + strand, within PFR28_04845at 5536.840 kb on - strand, within PFR28_04845at 5536.927 kb on + strandat 5536.927 kb on + strandat 5536.927 kb on + strandat 5536.930 kb on - strandat 5536.930 kb on - strandat 5537.116 kb on + strand, within PFR28_04846at 5537.117 kb on - strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.235 kb on + strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.236 kb on - strand, within PFR28_04846at 5537.250 kb on - strand, within PFR28_04846at 5537.250 kb on - strand, within PFR28_04846at 5537.387 kb on - strand, within PFR28_04846at 5537.387 kb on - strand, within PFR28_04846at 5537.387 kb on - strand, within PFR28_04846at 5537.387 kb on - strand, within PFR28_04846at 5537.387 kb on - strand, within PFR28_04846at 5537.506 kb on + strand, within PFR28_04846at 5537.506 kb on + strand, within PFR28_04846at 5537.506 kb on + strand, within PFR28_04846at 5537.507 kb on - strand, within PFR28_04846at 5537.562 kb on + strand, within PFR28_04846at 5537.601 kb on - strandat 5537.601 kb on - strandat 5537.637 kb on - strandat 5537.637 kb on - strandat 5537.713 kb on + strandat 5537.977 kb on + strand, within PFR28_04847at 5537.977 kb on + strand, within PFR28_04847at 5538.214 kb on + strand, within PFR28_04847at 5538.251 kb on + strand, within PFR28_04847at 5538.364 kb on + strand, within PFR28_04847at 5538.629 kb on + strand, within PFR28_04847at 5538.629 kb on + strand, within PFR28_04847at 5538.629 kb on + strand, within PFR28_04847at 5538.629 kb on + strand, within PFR28_04847at 5538.630 kb on - strand, within PFR28_04847at 5538.630 kb on - strand, within PFR28_04847at 5538.630 kb on - strand, within PFR28_04847at 5538.640 kb on + strandat 5538.641 kb on - strandat 5538.775 kb on + strandat 5538.776 kb on - strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.829 kb on + strandat 5538.830 kb on - strandat 5538.830 kb on - strandat 5538.830 kb on - strandat 5538.830 kb on - strandat 5538.830 kb on - strandat 5538.830 kb on - strandat 5538.898 kb on + strand, within PFR28_04848at 5538.898 kb on + strand, within PFR28_04848at 5538.898 kb on + strand, within PFR28_04848at 5538.898 kb on + strand, within PFR28_04848at 5538.898 kb on + strand, within PFR28_04848at 5538.898 kb on + strand, within PFR28_04848at 5538.898 kb on + strand, within PFR28_04848at 5538.898 kb on + strand, within PFR28_04848at 5538.898 kb on + strand, within PFR28_04848at 5538.898 kb on + strand, within PFR28_04848at 5538.899 kb on - strand, within PFR28_04848at 5538.899 kb on - strand, within PFR28_04848at 5538.899 kb on - strand, within PFR28_04848at 5538.899 kb on - strand, within PFR28_04848at 5538.967 kb on + strand, within PFR28_04848at 5538.967 kb on + strand, within PFR28_04848at 5538.967 kb on + strand, within PFR28_04848at 5538.968 kb on - strand, within PFR28_04848at 5538.968 kb on - strand, within PFR28_04848at 5539.003 kb on + strand, within PFR28_04848at 5539.087 kb on + strand, within PFR28_04848at 5539.087 kb on + strand, within PFR28_04848at 5539.088 kb on - strand, within PFR28_04848at 5539.088 kb on - strand, within PFR28_04848at 5539.088 kb on - strand, within PFR28_04848at 5539.321 kb on + strand, within PFR28_04848at 5539.322 kb on - strand, within PFR28_04848at 5539.569 kb on - strandat 5539.569 kb on - strandat 5539.581 kb on + strandat 5539.582 kb on - strandat 5539.595 kb on + strandat 5539.596 kb on - strandat 5539.596 kb on - strandat 5539.596 kb on - strandat 5539.718 kb on - strandat 5539.718 kb on - strandat 5539.729 kb on + strandat 5539.729 kb on + strandat 5539.729 kb on + strandat 5539.729 kb on + strandat 5539.729 kb on + strandat 5539.730 kb on - strandat 5539.730 kb on - strandat 5539.730 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Keto-D-gluconic hemicalcium salt (C) 10 mM
remove
5,536,636 + PFR28_04845 0.55 -0.6
5,536,759 + PFR28_04845 0.73 +0.5
5,536,839 + PFR28_04845 0.85 -0.6
5,536,839 + PFR28_04845 0.85 +0.9
5,536,840 - PFR28_04845 0.85 +0.0
5,536,927 + +0.0
5,536,927 + -0.6
5,536,927 + +1.4
5,536,930 - -1.2
5,536,930 - +0.5
5,537,116 + PFR28_04846 0.19 +1.7
5,537,117 - PFR28_04846 0.19 +0.1
5,537,235 + PFR28_04846 0.38 -0.5
5,537,235 + PFR28_04846 0.38 -0.2
5,537,235 + PFR28_04846 0.38 -0.2
5,537,235 + PFR28_04846 0.38 -0.1
5,537,235 + PFR28_04846 0.38 -2.2
5,537,235 + PFR28_04846 0.38 -0.9
5,537,235 + PFR28_04846 0.38 -0.7
5,537,235 + PFR28_04846 0.38 -0.5
5,537,235 + PFR28_04846 0.38 -0.5
5,537,235 + PFR28_04846 0.38 -0.4
5,537,235 + PFR28_04846 0.38 +0.2
5,537,235 + PFR28_04846 0.38 -0.5
5,537,235 + PFR28_04846 0.38 +1.6
5,537,235 + PFR28_04846 0.38 +0.7
5,537,235 + PFR28_04846 0.38 +0.2
5,537,235 + PFR28_04846 0.38 +0.1
5,537,235 + PFR28_04846 0.38 +0.1
5,537,235 + PFR28_04846 0.38 +0.2
5,537,236 - PFR28_04846 0.38 +0.0
5,537,236 - PFR28_04846 0.38 +0.4
5,537,236 - PFR28_04846 0.38 -0.5
5,537,236 - PFR28_04846 0.38 -1.7
5,537,236 - PFR28_04846 0.38 -0.4
5,537,236 - PFR28_04846 0.38 +0.5
5,537,236 - PFR28_04846 0.38 +0.5
5,537,236 - PFR28_04846 0.38 -0.6
5,537,236 - PFR28_04846 0.38 -0.4
5,537,236 - PFR28_04846 0.38 +0.3
5,537,236 - PFR28_04846 0.38 -2.2
5,537,236 - PFR28_04846 0.38 -0.2
5,537,236 - PFR28_04846 0.38 -0.5
5,537,236 - PFR28_04846 0.38 -0.1
5,537,236 - PFR28_04846 0.38 +0.6
5,537,236 - PFR28_04846 0.38 +0.5
5,537,236 - PFR28_04846 0.38 +0.1
5,537,236 - PFR28_04846 0.38 +0.9
5,537,236 - PFR28_04846 0.38 -0.3
5,537,236 - PFR28_04846 0.38 +0.8
5,537,236 - PFR28_04846 0.38 -1.2
5,537,236 - PFR28_04846 0.38 +0.9
5,537,236 - PFR28_04846 0.38 +0.0
5,537,236 - PFR28_04846 0.38 +0.0
5,537,250 - PFR28_04846 0.40 -0.2
5,537,250 - PFR28_04846 0.40 -2.9
5,537,387 - PFR28_04846 0.61 +0.7
5,537,387 - PFR28_04846 0.61 -1.4
5,537,387 - PFR28_04846 0.61 -0.2
5,537,387 - PFR28_04846 0.61 +0.5
5,537,387 - PFR28_04846 0.61 -0.8
5,537,506 + PFR28_04846 0.80 +0.1
5,537,506 + PFR28_04846 0.80 +0.1
5,537,506 + PFR28_04846 0.80 -0.4
5,537,507 - PFR28_04846 0.80 +0.1
5,537,562 + PFR28_04846 0.88 +0.3
5,537,601 - +0.9
5,537,601 - +0.5
5,537,637 - +0.6
5,537,637 - +0.2
5,537,713 + +0.4
5,537,977 + PFR28_04847 0.31 +0.7
5,537,977 + PFR28_04847 0.31 +0.1
5,538,214 + PFR28_04847 0.52 +0.2
5,538,251 + PFR28_04847 0.56 -0.1
5,538,364 + PFR28_04847 0.66 -1.9
5,538,629 + PFR28_04847 0.89 +1.2
5,538,629 + PFR28_04847 0.89 +0.5
5,538,629 + PFR28_04847 0.89 +0.7
5,538,629 + PFR28_04847 0.89 +0.3
5,538,630 - PFR28_04847 0.89 +0.1
5,538,630 - PFR28_04847 0.89 +0.9
5,538,630 - PFR28_04847 0.89 -1.3
5,538,640 + +1.1
5,538,641 - +0.0
5,538,775 + +0.3
5,538,776 - +0.3
5,538,829 + +0.5
5,538,829 + +0.3
5,538,829 + -0.5
5,538,829 + +0.8
5,538,829 + -2.4
5,538,829 + -0.9
5,538,829 + -0.5
5,538,829 + -1.1
5,538,829 + -0.3
5,538,829 + -0.2
5,538,829 + -0.8
5,538,829 + -0.5
5,538,829 + -0.1
5,538,829 + -0.6
5,538,829 + -0.0
5,538,830 - -1.2
5,538,830 - +1.4
5,538,830 - +1.1
5,538,830 - -0.6
5,538,830 - -1.7
5,538,830 - +1.2
5,538,898 + PFR28_04848 0.18 -0.0
5,538,898 + PFR28_04848 0.18 +0.4
5,538,898 + PFR28_04848 0.18 +1.6
5,538,898 + PFR28_04848 0.18 +0.2
5,538,898 + PFR28_04848 0.18 +0.4
5,538,898 + PFR28_04848 0.18 -0.4
5,538,898 + PFR28_04848 0.18 +1.3
5,538,898 + PFR28_04848 0.18 -0.6
5,538,898 + PFR28_04848 0.18 -0.2
5,538,898 + PFR28_04848 0.18 -0.6
5,538,899 - PFR28_04848 0.18 +0.7
5,538,899 - PFR28_04848 0.18 -2.1
5,538,899 - PFR28_04848 0.18 -1.3
5,538,899 - PFR28_04848 0.18 +0.4
5,538,967 + PFR28_04848 0.26 -0.6
5,538,967 + PFR28_04848 0.26 +0.5
5,538,967 + PFR28_04848 0.26 +0.2
5,538,968 - PFR28_04848 0.27 +0.5
5,538,968 - PFR28_04848 0.27 +0.2
5,539,003 + PFR28_04848 0.31 -1.1
5,539,087 + PFR28_04848 0.41 +0.8
5,539,087 + PFR28_04848 0.41 -0.0
5,539,088 - PFR28_04848 0.41 -0.1
5,539,088 - PFR28_04848 0.41 -0.0
5,539,088 - PFR28_04848 0.41 +0.4
5,539,321 + PFR28_04848 0.70 -0.4
5,539,322 - PFR28_04848 0.70 -0.1
5,539,569 - -1.7
5,539,569 - -1.4
5,539,581 + -0.0
5,539,582 - +0.4
5,539,595 + +0.2
5,539,596 - -2.1
5,539,596 - +0.4
5,539,596 - +0.4
5,539,718 - +1.9
5,539,718 - -0.6
5,539,729 + -2.2
5,539,729 + -0.6
5,539,729 + +0.2
5,539,729 + +0.4
5,539,729 + -0.2
5,539,730 - +0.4
5,539,730 - -1.4
5,539,730 - -0.9

Or see this region's nucleotide sequence