Strain Fitness in Pseudomonas sp. RS175 around PFR28_03717

Experiment: m-Inositol (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_03716 and PFR28_03717 are separated by 975 nucleotides PFR28_03716: PFR28_03716 - hypothetical protein, at 4,281,554 to 4,281,730 _03716 PFR28_03717: PFR28_03717 - tRNA-Leu, at 4,282,706 to 4,282,796 _03717 Position (kb) 4282 4283Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4281.728 kb on + strandat 4281.763 kb on - strandat 4281.843 kb on + strandat 4281.843 kb on + strandat 4281.844 kb on - strandat 4281.844 kb on - strandat 4281.844 kb on - strandat 4281.885 kb on + strandat 4281.885 kb on + strandat 4281.885 kb on + strandat 4281.906 kb on + strandat 4281.936 kb on + strandat 4281.937 kb on - strandat 4281.937 kb on - strandat 4282.009 kb on - strandat 4282.329 kb on + strandat 4282.488 kb on + strandat 4282.488 kb on + strandat 4282.488 kb on + strandat 4282.488 kb on + strandat 4282.488 kb on + strandat 4282.488 kb on + strandat 4282.488 kb on + strandat 4282.488 kb on + strandat 4282.489 kb on - strandat 4282.489 kb on - strandat 4282.489 kb on - strandat 4282.692 kb on + strandat 4282.692 kb on + strandat 4282.692 kb on + strandat 4282.692 kb on + strandat 4282.693 kb on - strandat 4282.693 kb on - strandat 4282.693 kb on - strandat 4282.693 kb on - strandat 4282.695 kb on - strandat 4282.808 kb on + strandat 4282.808 kb on + strandat 4282.808 kb on + strandat 4282.809 kb on - strandat 4282.809 kb on - strandat 4282.809 kb on - strandat 4282.809 kb on - strandat 4282.812 kb on + strandat 4282.812 kb on + strandat 4282.813 kb on - strandat 4282.878 kb on + strandat 4282.878 kb on + strandat 4282.878 kb on + strandat 4282.879 kb on - strandat 4282.879 kb on - strandat 4282.974 kb on + strandat 4282.974 kb on + strandat 4282.974 kb on + strandat 4283.082 kb on + strandat 4283.082 kb on + strandat 4283.082 kb on + strandat 4283.082 kb on + strandat 4283.082 kb on + strandat 4283.082 kb on + strandat 4283.082 kb on + strandat 4283.083 kb on - strandat 4283.083 kb on - strandat 4283.083 kb on - strandat 4283.106 kb on + strandat 4283.106 kb on + strandat 4283.106 kb on + strandat 4283.106 kb on + strandat 4283.106 kb on + strandat 4283.106 kb on + strandat 4283.106 kb on + strandat 4283.106 kb on + strandat 4283.106 kb on + strandat 4283.106 kb on + strandat 4283.106 kb on + strandat 4283.107 kb on - strandat 4283.107 kb on - strandat 4283.164 kb on + strandat 4283.164 kb on + strandat 4283.164 kb on + strandat 4283.164 kb on + strandat 4283.164 kb on + strandat 4283.164 kb on + strandat 4283.165 kb on - strandat 4283.370 kb on + strandat 4283.370 kb on + strandat 4283.371 kb on - strandat 4283.371 kb on - strandat 4283.493 kb on + strandat 4283.493 kb on + strandat 4283.514 kb on + strandat 4283.514 kb on + strandat 4283.514 kb on + strandat 4283.514 kb on + strandat 4283.514 kb on + strandat 4283.515 kb on - strandat 4283.515 kb on - strandat 4283.515 kb on - strandat 4283.559 kb on + strandat 4283.559 kb on + strandat 4283.559 kb on + strandat 4283.560 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m-Inositol (C) 10 mM
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4,281,728 + -0.9
4,281,763 - +1.1
4,281,843 + -0.9
4,281,843 + -0.5
4,281,844 - +0.1
4,281,844 - +0.1
4,281,844 - -0.5
4,281,885 + +0.1
4,281,885 + -0.9
4,281,885 + -1.3
4,281,906 + +1.1
4,281,936 + +0.1
4,281,937 - +0.1
4,281,937 - +1.1
4,282,009 - -0.5
4,282,329 + -1.3
4,282,488 + -3.7
4,282,488 + -0.9
4,282,488 + +0.1
4,282,488 + +0.1
4,282,488 + -3.3
4,282,488 + -2.4
4,282,488 + -2.4
4,282,488 + -3.8
4,282,489 - +1.1
4,282,489 - +0.1
4,282,489 - -0.5
4,282,692 + -0.5
4,282,692 + -1.5
4,282,692 + -0.9
4,282,692 + -0.5
4,282,693 - +1.1
4,282,693 - +1.1
4,282,693 - +0.1
4,282,693 - +1.1
4,282,695 - -1.7
4,282,808 + -3.2
4,282,808 + +1.1
4,282,808 + -0.9
4,282,809 - +0.1
4,282,809 - -0.5
4,282,809 - +0.1
4,282,809 - -0.5
4,282,812 + -0.5
4,282,812 + +0.1
4,282,813 - -0.5
4,282,878 + -0.9
4,282,878 + -1.3
4,282,878 + -0.9
4,282,879 - +0.1
4,282,879 - +1.1
4,282,974 + -1.7
4,282,974 + -0.9
4,282,974 + +0.1
4,283,082 + -0.7
4,283,082 + -1.3
4,283,082 + -1.5
4,283,082 + +0.5
4,283,082 + -0.9
4,283,082 + -1.9
4,283,082 + +0.1
4,283,083 - -1.3
4,283,083 - +0.1
4,283,083 - +1.1
4,283,106 + -2.3
4,283,106 + -0.9
4,283,106 + -0.5
4,283,106 + +1.1
4,283,106 + +1.1
4,283,106 + -0.9
4,283,106 + -0.5
4,283,106 + -1.5
4,283,106 + -1.3
4,283,106 + +1.1
4,283,106 + -2.1
4,283,107 - +1.1
4,283,107 - +0.1
4,283,164 + -2.5
4,283,164 + -3.8
4,283,164 + -3.8
4,283,164 + -0.2
4,283,164 + -1.7
4,283,164 + -2.9
4,283,165 - +1.1
4,283,370 + +0.1
4,283,370 + -3.1
4,283,371 - +1.1
4,283,371 - +0.1
4,283,493 + -0.9
4,283,493 + +1.1
4,283,514 + +1.1
4,283,514 + -0.5
4,283,514 + +1.1
4,283,514 + +0.1
4,283,514 + +1.1
4,283,515 - +0.1
4,283,515 - -0.5
4,283,515 - +1.1
4,283,559 + +1.1
4,283,559 + +1.1
4,283,559 + -0.9
4,283,560 - +0.1

Or see this region's nucleotide sequence