Strain Fitness in Pseudomonas sp. RS175 around PFR28_04974

Experiment: D-Ribose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04973 and PFR28_04974 are separated by 307 nucleotidesPFR28_04974 and PFR28_04975 are separated by 52 nucleotides PFR28_04973: PFR28_04973 - hypothetical protein, at 5,673,114 to 5,673,917 _04973 PFR28_04974: PFR28_04974 - hypothetical protein, at 5,674,225 to 5,675,172 _04974 PFR28_04975: PFR28_04975 - Carboxylesterase NlhH, at 5,675,225 to 5,676,136 _04975 Position (kb) 5674 5675 5676Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5673.252 kb on - strand, within PFR28_04973at 5673.252 kb on - strand, within PFR28_04973at 5673.264 kb on + strand, within PFR28_04973at 5673.360 kb on + strand, within PFR28_04973at 5673.360 kb on + strand, within PFR28_04973at 5673.360 kb on + strand, within PFR28_04973at 5673.360 kb on + strand, within PFR28_04973at 5673.361 kb on - strand, within PFR28_04973at 5673.361 kb on - strand, within PFR28_04973at 5673.361 kb on - strand, within PFR28_04973at 5673.361 kb on - strand, within PFR28_04973at 5673.361 kb on - strand, within PFR28_04973at 5673.371 kb on + strand, within PFR28_04973at 5673.371 kb on + strand, within PFR28_04973at 5673.372 kb on - strand, within PFR28_04973at 5673.374 kb on + strand, within PFR28_04973at 5673.459 kb on + strand, within PFR28_04973at 5673.459 kb on + strand, within PFR28_04973at 5673.460 kb on - strand, within PFR28_04973at 5673.460 kb on - strand, within PFR28_04973at 5673.460 kb on - strand, within PFR28_04973at 5673.483 kb on + strand, within PFR28_04973at 5673.483 kb on + strand, within PFR28_04973at 5673.484 kb on - strand, within PFR28_04973at 5673.798 kb on + strand, within PFR28_04973at 5673.798 kb on + strand, within PFR28_04973at 5673.798 kb on + strand, within PFR28_04973at 5673.798 kb on + strand, within PFR28_04973at 5673.798 kb on + strand, within PFR28_04973at 5673.799 kb on - strand, within PFR28_04973at 5673.799 kb on - strand, within PFR28_04973at 5673.799 kb on - strand, within PFR28_04973at 5673.799 kb on - strand, within PFR28_04973at 5673.799 kb on - strand, within PFR28_04973at 5673.799 kb on - strand, within PFR28_04973at 5673.799 kb on - strand, within PFR28_04973at 5673.799 kb on - strand, within PFR28_04973at 5673.799 kb on - strand, within PFR28_04973at 5673.825 kb on + strand, within PFR28_04973at 5673.906 kb on + strandat 5673.906 kb on + strandat 5673.906 kb on + strandat 5673.907 kb on - strandat 5673.907 kb on - strandat 5674.050 kb on + strandat 5674.050 kb on + strandat 5674.092 kb on + strandat 5674.198 kb on + strandat 5674.198 kb on + strandat 5674.399 kb on + strand, within PFR28_04974at 5674.400 kb on - strand, within PFR28_04974at 5674.469 kb on + strand, within PFR28_04974at 5674.469 kb on + strand, within PFR28_04974at 5674.469 kb on + strand, within PFR28_04974at 5674.469 kb on + strand, within PFR28_04974at 5674.470 kb on - strand, within PFR28_04974at 5674.470 kb on - strand, within PFR28_04974at 5674.470 kb on - strand, within PFR28_04974at 5674.470 kb on - strand, within PFR28_04974at 5674.594 kb on + strand, within PFR28_04974at 5674.594 kb on + strand, within PFR28_04974at 5674.594 kb on + strand, within PFR28_04974at 5674.594 kb on + strand, within PFR28_04974at 5674.594 kb on + strand, within PFR28_04974at 5674.594 kb on + strand, within PFR28_04974at 5674.594 kb on + strand, within PFR28_04974at 5674.595 kb on - strand, within PFR28_04974at 5674.595 kb on - strand, within PFR28_04974at 5674.595 kb on - strand, within PFR28_04974at 5674.595 kb on - strand, within PFR28_04974at 5674.595 kb on - strand, within PFR28_04974at 5674.595 kb on - strand, within PFR28_04974at 5674.595 kb on - strand, within PFR28_04974at 5674.595 kb on - strand, within PFR28_04974at 5674.595 kb on - strand, within PFR28_04974at 5674.595 kb on - strand, within PFR28_04974at 5674.666 kb on + strand, within PFR28_04974at 5674.666 kb on + strand, within PFR28_04974at 5674.666 kb on + strand, within PFR28_04974at 5674.667 kb on - strand, within PFR28_04974at 5674.667 kb on - strand, within PFR28_04974at 5674.667 kb on - strand, within PFR28_04974at 5674.870 kb on + strand, within PFR28_04974at 5674.870 kb on + strand, within PFR28_04974at 5674.870 kb on + strand, within PFR28_04974at 5674.871 kb on - strand, within PFR28_04974at 5674.871 kb on - strand, within PFR28_04974at 5674.871 kb on - strand, within PFR28_04974at 5674.871 kb on - strand, within PFR28_04974at 5674.871 kb on - strand, within PFR28_04974at 5674.871 kb on - strand, within PFR28_04974at 5674.894 kb on + strand, within PFR28_04974at 5674.894 kb on + strand, within PFR28_04974at 5674.895 kb on - strand, within PFR28_04974at 5674.945 kb on + strand, within PFR28_04974at 5674.945 kb on + strand, within PFR28_04974at 5674.946 kb on - strand, within PFR28_04974at 5674.946 kb on - strand, within PFR28_04974at 5674.946 kb on - strand, within PFR28_04974at 5675.204 kb on + strandat 5675.204 kb on + strandat 5675.204 kb on + strandat 5675.204 kb on + strandat 5675.204 kb on + strandat 5675.204 kb on + strandat 5675.204 kb on + strandat 5675.204 kb on + strandat 5675.204 kb on + strandat 5675.204 kb on + strandat 5675.204 kb on + strandat 5675.204 kb on + strandat 5675.204 kb on + strandat 5675.205 kb on - strandat 5675.205 kb on - strandat 5675.205 kb on - strandat 5675.205 kb on - strandat 5675.205 kb on - strandat 5675.205 kb on - strandat 5675.205 kb on - strandat 5675.205 kb on - strandat 5675.206 kb on + strandat 5675.206 kb on + strandat 5675.206 kb on + strandat 5675.206 kb on + strandat 5675.206 kb on + strandat 5675.206 kb on + strandat 5675.207 kb on - strandat 5675.207 kb on - strandat 5675.207 kb on - strandat 5675.207 kb on - strandat 5675.207 kb on - strandat 5675.207 kb on - strandat 5675.207 kb on - strandat 5675.207 kb on - strandat 5675.207 kb on - strandat 5675.207 kb on - strandat 5675.207 kb on - strandat 5675.207 kb on - strandat 5675.231 kb on + strandat 5675.411 kb on + strand, within PFR28_04975at 5675.411 kb on + strand, within PFR28_04975at 5675.411 kb on + strand, within PFR28_04975at 5675.412 kb on - strand, within PFR28_04975at 5675.459 kb on + strand, within PFR28_04975at 5675.459 kb on + strand, within PFR28_04975at 5675.459 kb on + strand, within PFR28_04975at 5675.459 kb on + strand, within PFR28_04975at 5675.460 kb on - strand, within PFR28_04975at 5675.460 kb on - strand, within PFR28_04975at 5675.460 kb on - strand, within PFR28_04975at 5675.541 kb on + strand, within PFR28_04975at 5675.726 kb on - strand, within PFR28_04975at 5675.765 kb on + strand, within PFR28_04975at 5675.766 kb on - strand, within PFR28_04975at 5675.864 kb on + strand, within PFR28_04975at 5675.865 kb on - strand, within PFR28_04975at 5675.865 kb on - strand, within PFR28_04975at 5675.865 kb on - strand, within PFR28_04975at 5675.891 kb on + strand, within PFR28_04975at 5676.029 kb on + strand, within PFR28_04975at 5676.029 kb on + strand, within PFR28_04975at 5676.029 kb on + strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.030 kb on - strand, within PFR28_04975at 5676.098 kb on + strandat 5676.116 kb on + strandat 5676.116 kb on + strandat 5676.116 kb on + strandat 5676.116 kb on + strandat 5676.116 kb on + strandat 5676.117 kb on - strandat 5676.117 kb on - strandat 5676.117 kb on - strandat 5676.117 kb on - strandat 5676.117 kb on - strandat 5676.157 kb on + strandat 5676.162 kb on + strandat 5676.163 kb on - strandat 5676.163 kb on - strandat 5676.163 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C) 10 mM
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5,673,252 - PFR28_04973 0.17 +0.7
5,673,252 - PFR28_04973 0.17 +0.0
5,673,264 + PFR28_04973 0.19 -0.9
5,673,360 + PFR28_04973 0.31 -0.3
5,673,360 + PFR28_04973 0.31 -0.7
5,673,360 + PFR28_04973 0.31 -0.6
5,673,360 + PFR28_04973 0.31 -0.2
5,673,361 - PFR28_04973 0.31 -0.7
5,673,361 - PFR28_04973 0.31 -0.0
5,673,361 - PFR28_04973 0.31 -0.5
5,673,361 - PFR28_04973 0.31 -0.3
5,673,361 - PFR28_04973 0.31 -0.1
5,673,371 + PFR28_04973 0.32 -0.9
5,673,371 + PFR28_04973 0.32 -0.3
5,673,372 - PFR28_04973 0.32 -0.0
5,673,374 + PFR28_04973 0.32 -0.8
5,673,459 + PFR28_04973 0.43 -3.2
5,673,459 + PFR28_04973 0.43 -1.3
5,673,460 - PFR28_04973 0.43 +0.0
5,673,460 - PFR28_04973 0.43 -0.3
5,673,460 - PFR28_04973 0.43 +0.3
5,673,483 + PFR28_04973 0.46 -0.5
5,673,483 + PFR28_04973 0.46 +1.0
5,673,484 - PFR28_04973 0.46 -1.6
5,673,798 + PFR28_04973 0.85 -0.1
5,673,798 + PFR28_04973 0.85 +1.4
5,673,798 + PFR28_04973 0.85 +0.9
5,673,798 + PFR28_04973 0.85 -2.9
5,673,798 + PFR28_04973 0.85 +0.4
5,673,799 - PFR28_04973 0.85 +0.2
5,673,799 - PFR28_04973 0.85 -0.5
5,673,799 - PFR28_04973 0.85 -1.0
5,673,799 - PFR28_04973 0.85 -0.6
5,673,799 - PFR28_04973 0.85 +0.3
5,673,799 - PFR28_04973 0.85 -0.3
5,673,799 - PFR28_04973 0.85 +0.5
5,673,799 - PFR28_04973 0.85 -0.1
5,673,799 - PFR28_04973 0.85 +2.2
5,673,825 + PFR28_04973 0.88 -0.4
5,673,906 + -0.1
5,673,906 + +0.1
5,673,906 + +1.5
5,673,907 - +0.1
5,673,907 - +0.0
5,674,050 + -0.0
5,674,050 + +0.5
5,674,092 + +0.1
5,674,198 + +0.4
5,674,198 + -0.8
5,674,399 + PFR28_04974 0.18 +0.5
5,674,400 - PFR28_04974 0.18 -0.1
5,674,469 + PFR28_04974 0.26 -1.2
5,674,469 + PFR28_04974 0.26 +0.4
5,674,469 + PFR28_04974 0.26 -0.4
5,674,469 + PFR28_04974 0.26 +0.3
5,674,470 - PFR28_04974 0.26 +0.4
5,674,470 - PFR28_04974 0.26 -1.2
5,674,470 - PFR28_04974 0.26 -0.1
5,674,470 - PFR28_04974 0.26 -2.2
5,674,594 + PFR28_04974 0.39 -0.1
5,674,594 + PFR28_04974 0.39 +0.1
5,674,594 + PFR28_04974 0.39 -1.1
5,674,594 + PFR28_04974 0.39 -0.3
5,674,594 + PFR28_04974 0.39 -0.2
5,674,594 + PFR28_04974 0.39 -0.6
5,674,594 + PFR28_04974 0.39 -0.9
5,674,595 - PFR28_04974 0.39 -2.1
5,674,595 - PFR28_04974 0.39 +0.8
5,674,595 - PFR28_04974 0.39 +1.0
5,674,595 - PFR28_04974 0.39 -0.3
5,674,595 - PFR28_04974 0.39 +2.4
5,674,595 - PFR28_04974 0.39 -0.4
5,674,595 - PFR28_04974 0.39 -0.1
5,674,595 - PFR28_04974 0.39 -0.8
5,674,595 - PFR28_04974 0.39 -1.3
5,674,595 - PFR28_04974 0.39 +0.1
5,674,666 + PFR28_04974 0.47 +0.4
5,674,666 + PFR28_04974 0.47 -0.3
5,674,666 + PFR28_04974 0.47 -0.3
5,674,667 - PFR28_04974 0.47 -0.3
5,674,667 - PFR28_04974 0.47 -0.8
5,674,667 - PFR28_04974 0.47 +0.0
5,674,870 + PFR28_04974 0.68 +0.0
5,674,870 + PFR28_04974 0.68 -1.0
5,674,870 + PFR28_04974 0.68 -0.1
5,674,871 - PFR28_04974 0.68 -0.1
5,674,871 - PFR28_04974 0.68 -1.2
5,674,871 - PFR28_04974 0.68 -0.2
5,674,871 - PFR28_04974 0.68 -0.2
5,674,871 - PFR28_04974 0.68 -0.1
5,674,871 - PFR28_04974 0.68 +0.1
5,674,894 + PFR28_04974 0.71 +0.5
5,674,894 + PFR28_04974 0.71 -0.2
5,674,895 - PFR28_04974 0.71 -0.4
5,674,945 + PFR28_04974 0.76 -2.7
5,674,945 + PFR28_04974 0.76 -0.5
5,674,946 - PFR28_04974 0.76 -0.4
5,674,946 - PFR28_04974 0.76 -1.3
5,674,946 - PFR28_04974 0.76 -0.1
5,675,204 + -1.1
5,675,204 + -0.6
5,675,204 + -0.4
5,675,204 + +0.2
5,675,204 + -0.5
5,675,204 + -0.0
5,675,204 + +0.4
5,675,204 + +0.3
5,675,204 + +0.1
5,675,204 + -2.0
5,675,204 + +0.6
5,675,204 + -1.4
5,675,204 + -0.2
5,675,205 - +0.8
5,675,205 - -0.2
5,675,205 - +0.3
5,675,205 - -2.0
5,675,205 - -0.3
5,675,205 - -0.2
5,675,205 - +1.1
5,675,205 - +0.8
5,675,206 + -1.3
5,675,206 + +0.1
5,675,206 + -0.1
5,675,206 + -1.0
5,675,206 + +0.6
5,675,206 + -1.1
5,675,207 - -0.3
5,675,207 - -1.8
5,675,207 - +0.5
5,675,207 - -0.3
5,675,207 - +0.9
5,675,207 - +0.3
5,675,207 - -1.5
5,675,207 - -0.1
5,675,207 - -0.4
5,675,207 - +0.5
5,675,207 - -1.3
5,675,207 - -0.2
5,675,231 + -1.0
5,675,411 + PFR28_04975 0.20 -0.5
5,675,411 + PFR28_04975 0.20 +0.9
5,675,411 + PFR28_04975 0.20 +0.2
5,675,412 - PFR28_04975 0.21 +0.2
5,675,459 + PFR28_04975 0.26 -0.4
5,675,459 + PFR28_04975 0.26 -0.8
5,675,459 + PFR28_04975 0.26 +0.1
5,675,459 + PFR28_04975 0.26 -0.2
5,675,460 - PFR28_04975 0.26 +0.7
5,675,460 - PFR28_04975 0.26 +1.6
5,675,460 - PFR28_04975 0.26 +0.5
5,675,541 + PFR28_04975 0.35 +0.6
5,675,726 - PFR28_04975 0.55 -0.5
5,675,765 + PFR28_04975 0.59 +0.4
5,675,766 - PFR28_04975 0.59 -1.4
5,675,864 + PFR28_04975 0.70 -1.2
5,675,865 - PFR28_04975 0.70 -1.3
5,675,865 - PFR28_04975 0.70 -0.6
5,675,865 - PFR28_04975 0.70 -0.3
5,675,891 + PFR28_04975 0.73 -1.3
5,676,029 + PFR28_04975 0.88 -0.7
5,676,029 + PFR28_04975 0.88 +0.5
5,676,029 + PFR28_04975 0.88 -0.9
5,676,030 - PFR28_04975 0.88 +0.2
5,676,030 - PFR28_04975 0.88 +0.2
5,676,030 - PFR28_04975 0.88 -2.7
5,676,030 - PFR28_04975 0.88 +0.6
5,676,030 - PFR28_04975 0.88 -0.1
5,676,030 - PFR28_04975 0.88 -0.6
5,676,030 - PFR28_04975 0.88 -0.2
5,676,030 - PFR28_04975 0.88 +0.2
5,676,030 - PFR28_04975 0.88 -0.2
5,676,030 - PFR28_04975 0.88 +1.4
5,676,030 - PFR28_04975 0.88 -0.0
5,676,030 - PFR28_04975 0.88 -1.7
5,676,030 - PFR28_04975 0.88 -0.3
5,676,030 - PFR28_04975 0.88 +0.2
5,676,098 + +0.8
5,676,116 + -0.8
5,676,116 + +0.2
5,676,116 + -0.0
5,676,116 + +0.2
5,676,116 + -1.0
5,676,117 - +0.0
5,676,117 - -1.2
5,676,117 - +1.0
5,676,117 - -1.3
5,676,117 - -0.3
5,676,157 + +0.6
5,676,162 + -1.1
5,676,163 - +1.3
5,676,163 - +0.5
5,676,163 - -0.6

Or see this region's nucleotide sequence