Strain Fitness in Pseudomonas sp. RS175 around PFR28_01202

Experiment: D-Ribose (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01200 and PFR28_01201 are separated by 120 nucleotidesPFR28_01201 and PFR28_01202 are separated by 86 nucleotidesPFR28_01202 and PFR28_01203 are separated by 174 nucleotides PFR28_01200: PFR28_01200 - Purine ribonucleoside efflux pump NepI, at 1,309,329 to 1,310,585 _01200 PFR28_01201: PFR28_01201 - hypothetical protein, at 1,310,706 to 1,311,194 _01201 PFR28_01202: PFR28_01202 - hypothetical protein, at 1,311,281 to 1,312,429 _01202 PFR28_01203: PFR28_01203 - putative chromate transport protein, at 1,312,604 to 1,313,950 _01203 Position (kb) 1311 1312 1313Strain fitness (log2 ratio) -2 -1 0 1 2at 1310.837 kb on + strand, within PFR28_01201at 1310.837 kb on + strand, within PFR28_01201at 1310.927 kb on + strand, within PFR28_01201at 1310.927 kb on + strand, within PFR28_01201at 1310.928 kb on - strand, within PFR28_01201at 1310.968 kb on + strand, within PFR28_01201at 1310.969 kb on - strand, within PFR28_01201at 1310.969 kb on - strand, within PFR28_01201at 1310.974 kb on + strand, within PFR28_01201at 1310.974 kb on + strand, within PFR28_01201at 1310.974 kb on + strand, within PFR28_01201at 1310.974 kb on + strand, within PFR28_01201at 1310.975 kb on - strand, within PFR28_01201at 1310.975 kb on - strand, within PFR28_01201at 1311.003 kb on + strand, within PFR28_01201at 1311.003 kb on + strand, within PFR28_01201at 1311.003 kb on + strand, within PFR28_01201at 1311.004 kb on - strand, within PFR28_01201at 1311.004 kb on - strand, within PFR28_01201at 1311.077 kb on - strand, within PFR28_01201at 1311.085 kb on + strand, within PFR28_01201at 1311.086 kb on - strand, within PFR28_01201at 1311.086 kb on - strand, within PFR28_01201at 1311.227 kb on + strandat 1311.228 kb on - strandat 1311.228 kb on - strandat 1311.228 kb on - strandat 1311.404 kb on + strand, within PFR28_01202at 1311.458 kb on - strand, within PFR28_01202at 1311.465 kb on + strand, within PFR28_01202at 1311.465 kb on + strand, within PFR28_01202at 1311.465 kb on + strand, within PFR28_01202at 1311.465 kb on + strand, within PFR28_01202at 1311.465 kb on + strand, within PFR28_01202at 1311.465 kb on + strand, within PFR28_01202at 1311.465 kb on + strand, within PFR28_01202at 1311.465 kb on + strand, within PFR28_01202at 1311.465 kb on + strand, within PFR28_01202at 1311.465 kb on + strand, within PFR28_01202at 1311.465 kb on + strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.466 kb on - strand, within PFR28_01202at 1311.474 kb on + strand, within PFR28_01202at 1311.474 kb on + strand, within PFR28_01202at 1311.474 kb on + strand, within PFR28_01202at 1311.475 kb on - strand, within PFR28_01202at 1311.475 kb on - strand, within PFR28_01202at 1311.494 kb on - strand, within PFR28_01202at 1311.495 kb on + strand, within PFR28_01202at 1311.495 kb on + strand, within PFR28_01202at 1311.495 kb on + strand, within PFR28_01202at 1311.495 kb on + strand, within PFR28_01202at 1311.495 kb on + strand, within PFR28_01202at 1311.495 kb on + strand, within PFR28_01202at 1311.495 kb on + strand, within PFR28_01202at 1311.496 kb on - strand, within PFR28_01202at 1311.496 kb on - strand, within PFR28_01202at 1311.496 kb on - strand, within PFR28_01202at 1311.496 kb on - strand, within PFR28_01202at 1311.496 kb on - strand, within PFR28_01202at 1311.496 kb on - strand, within PFR28_01202at 1311.496 kb on - strand, within PFR28_01202at 1311.496 kb on - strand, within PFR28_01202at 1311.496 kb on - strand, within PFR28_01202at 1311.496 kb on - strand, within PFR28_01202at 1311.496 kb on - strand, within PFR28_01202at 1311.496 kb on - strand, within PFR28_01202at 1311.678 kb on + strand, within PFR28_01202at 1311.678 kb on + strand, within PFR28_01202at 1311.678 kb on + strand, within PFR28_01202at 1311.678 kb on + strand, within PFR28_01202at 1311.679 kb on - strand, within PFR28_01202at 1311.679 kb on - strand, within PFR28_01202at 1311.679 kb on - strand, within PFR28_01202at 1312.216 kb on + strand, within PFR28_01202at 1312.216 kb on + strand, within PFR28_01202at 1312.217 kb on - strand, within PFR28_01202at 1312.217 kb on - strand, within PFR28_01202at 1312.217 kb on - strand, within PFR28_01202at 1312.217 kb on - strand, within PFR28_01202at 1312.235 kb on + strand, within PFR28_01202at 1312.235 kb on + strand, within PFR28_01202at 1312.235 kb on + strand, within PFR28_01202at 1312.236 kb on - strand, within PFR28_01202at 1312.236 kb on - strand, within PFR28_01202at 1312.236 kb on - strand, within PFR28_01202at 1312.236 kb on - strand, within PFR28_01202at 1312.236 kb on - strand, within PFR28_01202at 1312.289 kb on + strand, within PFR28_01202at 1312.290 kb on - strand, within PFR28_01202at 1312.290 kb on - strand, within PFR28_01202at 1312.541 kb on + strandat 1312.541 kb on + strandat 1312.541 kb on + strandat 1312.541 kb on + strandat 1312.541 kb on + strandat 1312.542 kb on - strandat 1312.542 kb on - strandat 1312.542 kb on - strandat 1312.986 kb on + strand, within PFR28_01203at 1313.113 kb on - strand, within PFR28_01203at 1313.118 kb on + strand, within PFR28_01203at 1313.119 kb on - strand, within PFR28_01203at 1313.119 kb on - strand, within PFR28_01203at 1313.188 kb on + strand, within PFR28_01203at 1313.189 kb on - strand, within PFR28_01203at 1313.246 kb on + strand, within PFR28_01203at 1313.246 kb on + strand, within PFR28_01203at 1313.247 kb on - strand, within PFR28_01203at 1313.315 kb on - strand, within PFR28_01203

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C) 10 mM
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1,310,837 + PFR28_01201 0.27 -0.4
1,310,837 + PFR28_01201 0.27 +0.3
1,310,927 + PFR28_01201 0.45 +0.9
1,310,927 + PFR28_01201 0.45 +0.0
1,310,928 - PFR28_01201 0.45 -1.0
1,310,968 + PFR28_01201 0.54 -0.6
1,310,969 - PFR28_01201 0.54 +1.1
1,310,969 - PFR28_01201 0.54 -0.6
1,310,974 + PFR28_01201 0.55 +0.0
1,310,974 + PFR28_01201 0.55 +0.8
1,310,974 + PFR28_01201 0.55 +0.1
1,310,974 + PFR28_01201 0.55 -0.4
1,310,975 - PFR28_01201 0.55 -0.6
1,310,975 - PFR28_01201 0.55 -2.1
1,311,003 + PFR28_01201 0.61 -1.5
1,311,003 + PFR28_01201 0.61 +0.1
1,311,003 + PFR28_01201 0.61 -0.4
1,311,004 - PFR28_01201 0.61 +0.6
1,311,004 - PFR28_01201 0.61 -0.3
1,311,077 - PFR28_01201 0.76 +0.4
1,311,085 + PFR28_01201 0.78 +1.5
1,311,086 - PFR28_01201 0.78 -2.0
1,311,086 - PFR28_01201 0.78 +2.1
1,311,227 + -0.0
1,311,228 - -0.1
1,311,228 - +0.3
1,311,228 - +0.2
1,311,404 + PFR28_01202 0.11 -1.4
1,311,458 - PFR28_01202 0.15 +0.1
1,311,465 + PFR28_01202 0.16 -0.7
1,311,465 + PFR28_01202 0.16 -0.8
1,311,465 + PFR28_01202 0.16 -0.1
1,311,465 + PFR28_01202 0.16 -0.8
1,311,465 + PFR28_01202 0.16 +0.2
1,311,465 + PFR28_01202 0.16 +0.6
1,311,465 + PFR28_01202 0.16 -0.1
1,311,465 + PFR28_01202 0.16 -0.0
1,311,465 + PFR28_01202 0.16 +0.8
1,311,465 + PFR28_01202 0.16 +0.5
1,311,465 + PFR28_01202 0.16 -1.0
1,311,466 - PFR28_01202 0.16 -0.1
1,311,466 - PFR28_01202 0.16 +0.4
1,311,466 - PFR28_01202 0.16 +0.3
1,311,466 - PFR28_01202 0.16 -1.4
1,311,466 - PFR28_01202 0.16 +0.5
1,311,466 - PFR28_01202 0.16 +1.4
1,311,466 - PFR28_01202 0.16 -0.3
1,311,466 - PFR28_01202 0.16 +0.3
1,311,466 - PFR28_01202 0.16 -1.0
1,311,466 - PFR28_01202 0.16 -0.6
1,311,466 - PFR28_01202 0.16 +0.0
1,311,466 - PFR28_01202 0.16 -0.7
1,311,466 - PFR28_01202 0.16 -0.4
1,311,474 + PFR28_01202 0.17 +0.0
1,311,474 + PFR28_01202 0.17 +0.3
1,311,474 + PFR28_01202 0.17 -0.1
1,311,475 - PFR28_01202 0.17 -0.4
1,311,475 - PFR28_01202 0.17 -0.2
1,311,494 - PFR28_01202 0.19 +0.4
1,311,495 + PFR28_01202 0.19 -0.6
1,311,495 + PFR28_01202 0.19 +0.0
1,311,495 + PFR28_01202 0.19 -0.5
1,311,495 + PFR28_01202 0.19 +0.2
1,311,495 + PFR28_01202 0.19 +1.4
1,311,495 + PFR28_01202 0.19 +0.5
1,311,495 + PFR28_01202 0.19 +0.6
1,311,496 - PFR28_01202 0.19 +0.0
1,311,496 - PFR28_01202 0.19 -1.3
1,311,496 - PFR28_01202 0.19 -0.6
1,311,496 - PFR28_01202 0.19 -0.0
1,311,496 - PFR28_01202 0.19 -0.7
1,311,496 - PFR28_01202 0.19 +0.4
1,311,496 - PFR28_01202 0.19 -2.0
1,311,496 - PFR28_01202 0.19 +0.9
1,311,496 - PFR28_01202 0.19 -0.2
1,311,496 - PFR28_01202 0.19 -0.0
1,311,496 - PFR28_01202 0.19 +0.3
1,311,496 - PFR28_01202 0.19 -1.8
1,311,678 + PFR28_01202 0.35 +0.0
1,311,678 + PFR28_01202 0.35 +0.8
1,311,678 + PFR28_01202 0.35 +0.1
1,311,678 + PFR28_01202 0.35 +0.3
1,311,679 - PFR28_01202 0.35 -1.8
1,311,679 - PFR28_01202 0.35 +1.2
1,311,679 - PFR28_01202 0.35 +0.2
1,312,216 + PFR28_01202 0.81 +0.9
1,312,216 + PFR28_01202 0.81 +0.2
1,312,217 - PFR28_01202 0.81 +1.4
1,312,217 - PFR28_01202 0.81 -0.2
1,312,217 - PFR28_01202 0.81 -1.5
1,312,217 - PFR28_01202 0.81 -0.5
1,312,235 + PFR28_01202 0.83 +0.4
1,312,235 + PFR28_01202 0.83 +0.2
1,312,235 + PFR28_01202 0.83 +0.3
1,312,236 - PFR28_01202 0.83 -1.4
1,312,236 - PFR28_01202 0.83 +1.2
1,312,236 - PFR28_01202 0.83 -1.3
1,312,236 - PFR28_01202 0.83 -0.3
1,312,236 - PFR28_01202 0.83 +0.5
1,312,289 + PFR28_01202 0.88 -1.2
1,312,290 - PFR28_01202 0.88 +0.2
1,312,290 - PFR28_01202 0.88 -0.1
1,312,541 + -0.1
1,312,541 + +0.9
1,312,541 + -0.5
1,312,541 + +0.7
1,312,541 + -0.1
1,312,542 - +0.2
1,312,542 - +0.2
1,312,542 - -0.3
1,312,986 + PFR28_01203 0.28 +1.1
1,313,113 - PFR28_01203 0.38 -0.9
1,313,118 + PFR28_01203 0.38 +1.5
1,313,119 - PFR28_01203 0.38 -0.9
1,313,119 - PFR28_01203 0.38 -1.3
1,313,188 + PFR28_01203 0.43 -0.2
1,313,189 - PFR28_01203 0.43 +0.3
1,313,246 + PFR28_01203 0.48 +0.9
1,313,246 + PFR28_01203 0.48 -1.0
1,313,247 - PFR28_01203 0.48 -0.1
1,313,315 - PFR28_01203 0.53 +1.9

Or see this region's nucleotide sequence