Strain Fitness in Pseudomonas sp. RS175 around PFR28_00644

Experiment: D-Glucuronic (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00642 and PFR28_00643 overlap by 4 nucleotidesPFR28_00643 and PFR28_00644 are separated by 114 nucleotidesPFR28_00644 and PFR28_00645 are separated by 1 nucleotides PFR28_00642: PFR28_00642 - 6-aminohexanoate-dimer hydrolase, at 685,376 to 686,470 _00642 PFR28_00643: PFR28_00643 - hypothetical protein, at 686,467 to 686,775 _00643 PFR28_00644: PFR28_00644 - hypothetical protein, at 686,890 to 687,480 _00644 PFR28_00645: PFR28_00645 - Major cardiolipin synthase ClsA, at 687,482 to 688,639 _00645 Position (kb) 686 687 688Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 686.087 kb on + strand, within PFR28_00642at 686.087 kb on + strand, within PFR28_00642at 686.087 kb on + strand, within PFR28_00642at 686.087 kb on + strand, within PFR28_00642at 686.087 kb on + strand, within PFR28_00642at 686.088 kb on - strand, within PFR28_00642at 686.088 kb on - strand, within PFR28_00642at 686.088 kb on - strand, within PFR28_00642at 686.088 kb on - strand, within PFR28_00642at 686.088 kb on - strand, within PFR28_00642at 686.093 kb on + strand, within PFR28_00642at 686.094 kb on - strand, within PFR28_00642at 686.094 kb on - strand, within PFR28_00642at 686.094 kb on - strand, within PFR28_00642at 686.094 kb on - strand, within PFR28_00642at 686.315 kb on + strand, within PFR28_00642at 686.315 kb on + strand, within PFR28_00642at 686.315 kb on + strand, within PFR28_00642at 686.315 kb on + strand, within PFR28_00642at 686.316 kb on - strand, within PFR28_00642at 686.316 kb on - strand, within PFR28_00642at 686.316 kb on - strand, within PFR28_00642at 686.316 kb on - strand, within PFR28_00642at 686.316 kb on - strand, within PFR28_00642at 686.348 kb on + strand, within PFR28_00642at 686.348 kb on + strand, within PFR28_00642at 686.348 kb on + strand, within PFR28_00642at 686.348 kb on + strand, within PFR28_00642at 686.348 kb on + strand, within PFR28_00642at 686.348 kb on + strand, within PFR28_00642at 686.348 kb on + strand, within PFR28_00642at 686.348 kb on + strand, within PFR28_00642at 686.348 kb on + strand, within PFR28_00642at 686.348 kb on + strand, within PFR28_00642at 686.348 kb on + strand, within PFR28_00642at 686.349 kb on - strand, within PFR28_00642at 686.349 kb on - strand, within PFR28_00642at 686.349 kb on - strand, within PFR28_00642at 686.385 kb on - strandat 686.578 kb on + strand, within PFR28_00643at 686.578 kb on + strand, within PFR28_00643at 686.579 kb on - strand, within PFR28_00643at 686.593 kb on + strand, within PFR28_00643at 686.594 kb on - strand, within PFR28_00643at 686.594 kb on - strand, within PFR28_00643at 686.594 kb on - strand, within PFR28_00643at 686.594 kb on - strand, within PFR28_00643at 686.594 kb on - strand, within PFR28_00643at 686.608 kb on + strand, within PFR28_00643at 686.608 kb on + strand, within PFR28_00643at 686.609 kb on - strand, within PFR28_00643at 686.609 kb on - strand, within PFR28_00643at 686.633 kb on - strand, within PFR28_00643at 686.645 kb on - strand, within PFR28_00643at 686.645 kb on - strand, within PFR28_00643at 686.730 kb on + strand, within PFR28_00643at 686.870 kb on + strandat 686.871 kb on - strandat 686.871 kb on - strandat 686.889 kb on + strandat 686.889 kb on + strandat 686.889 kb on + strandat 686.889 kb on + strandat 686.889 kb on + strandat 686.889 kb on + strandat 686.890 kb on - strandat 686.890 kb on - strandat 686.890 kb on - strandat 686.890 kb on - strandat 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.289 kb on + strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.290 kb on - strand, within PFR28_00644at 687.495 kb on + strandat 687.608 kb on + strand, within PFR28_00645at 687.608 kb on + strand, within PFR28_00645at 687.608 kb on + strand, within PFR28_00645at 687.608 kb on + strand, within PFR28_00645at 687.609 kb on - strand, within PFR28_00645at 687.609 kb on - strand, within PFR28_00645at 687.704 kb on + strand, within PFR28_00645at 687.704 kb on + strand, within PFR28_00645at 687.705 kb on - strand, within PFR28_00645at 687.705 kb on - strand, within PFR28_00645at 687.705 kb on - strand, within PFR28_00645at 687.773 kb on + strand, within PFR28_00645at 687.773 kb on + strand, within PFR28_00645at 688.092 kb on - strand, within PFR28_00645at 688.092 kb on - strand, within PFR28_00645at 688.092 kb on - strand, within PFR28_00645at 688.181 kb on + strand, within PFR28_00645at 688.181 kb on + strand, within PFR28_00645at 688.181 kb on + strand, within PFR28_00645at 688.182 kb on - strand, within PFR28_00645at 688.182 kb on - strand, within PFR28_00645at 688.182 kb on - strand, within PFR28_00645at 688.258 kb on + strand, within PFR28_00645at 688.259 kb on - strand, within PFR28_00645at 688.307 kb on + strand, within PFR28_00645at 688.307 kb on + strand, within PFR28_00645at 688.307 kb on + strand, within PFR28_00645at 688.307 kb on + strand, within PFR28_00645at 688.307 kb on + strand, within PFR28_00645at 688.308 kb on - strand, within PFR28_00645at 688.308 kb on - strand, within PFR28_00645at 688.310 kb on + strand, within PFR28_00645

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic (C) 10 mM
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686,087 + PFR28_00642 0.65 +2.4
686,087 + PFR28_00642 0.65 -2.8
686,087 + PFR28_00642 0.65 -0.7
686,087 + PFR28_00642 0.65 -1.4
686,087 + PFR28_00642 0.65 -0.5
686,088 - PFR28_00642 0.65 -1.3
686,088 - PFR28_00642 0.65 -0.7
686,088 - PFR28_00642 0.65 -2.0
686,088 - PFR28_00642 0.65 +0.6
686,088 - PFR28_00642 0.65 -0.4
686,093 + PFR28_00642 0.65 -0.4
686,094 - PFR28_00642 0.66 +0.5
686,094 - PFR28_00642 0.66 -0.1
686,094 - PFR28_00642 0.66 -1.3
686,094 - PFR28_00642 0.66 -2.3
686,315 + PFR28_00642 0.86 +1.5
686,315 + PFR28_00642 0.86 -0.6
686,315 + PFR28_00642 0.86 -1.3
686,315 + PFR28_00642 0.86 -0.2
686,316 - PFR28_00642 0.86 -0.5
686,316 - PFR28_00642 0.86 -0.3
686,316 - PFR28_00642 0.86 -0.4
686,316 - PFR28_00642 0.86 +0.8
686,316 - PFR28_00642 0.86 -1.8
686,348 + PFR28_00642 0.89 +0.5
686,348 + PFR28_00642 0.89 +0.3
686,348 + PFR28_00642 0.89 +0.1
686,348 + PFR28_00642 0.89 +0.4
686,348 + PFR28_00642 0.89 -0.4
686,348 + PFR28_00642 0.89 +0.6
686,348 + PFR28_00642 0.89 -0.4
686,348 + PFR28_00642 0.89 +0.7
686,348 + PFR28_00642 0.89 +0.0
686,348 + PFR28_00642 0.89 +0.4
686,348 + PFR28_00642 0.89 -0.1
686,349 - PFR28_00642 0.89 -1.7
686,349 - PFR28_00642 0.89 +0.3
686,349 - PFR28_00642 0.89 +0.4
686,385 - -0.9
686,578 + PFR28_00643 0.36 -0.6
686,578 + PFR28_00643 0.36 +0.0
686,579 - PFR28_00643 0.36 +1.7
686,593 + PFR28_00643 0.41 -1.9
686,594 - PFR28_00643 0.41 +1.1
686,594 - PFR28_00643 0.41 +0.2
686,594 - PFR28_00643 0.41 +0.5
686,594 - PFR28_00643 0.41 -0.7
686,594 - PFR28_00643 0.41 +0.6
686,608 + PFR28_00643 0.46 -0.2
686,608 + PFR28_00643 0.46 +1.3
686,609 - PFR28_00643 0.46 -0.3
686,609 - PFR28_00643 0.46 +0.1
686,633 - PFR28_00643 0.54 -1.4
686,645 - PFR28_00643 0.58 +0.7
686,645 - PFR28_00643 0.58 +0.0
686,730 + PFR28_00643 0.85 -0.2
686,870 + +0.9
686,871 - -0.5
686,871 - +0.5
686,889 + -1.6
686,889 + -0.0
686,889 + +1.1
686,889 + +1.0
686,889 + -0.4
686,889 + +0.1
686,890 - +0.7
686,890 - +0.5
686,890 - +0.3
686,890 - -0.1
687,289 + PFR28_00644 0.68 +0.6
687,289 + PFR28_00644 0.68 +1.2
687,289 + PFR28_00644 0.68 +0.8
687,289 + PFR28_00644 0.68 -1.5
687,289 + PFR28_00644 0.68 -2.0
687,289 + PFR28_00644 0.68 +0.9
687,289 + PFR28_00644 0.68 +1.9
687,289 + PFR28_00644 0.68 +0.9
687,289 + PFR28_00644 0.68 +0.5
687,289 + PFR28_00644 0.68 -0.2
687,289 + PFR28_00644 0.68 +1.6
687,289 + PFR28_00644 0.68 +0.0
687,289 + PFR28_00644 0.68 +0.0
687,289 + PFR28_00644 0.68 +0.1
687,289 + PFR28_00644 0.68 +0.8
687,289 + PFR28_00644 0.68 +0.2
687,289 + PFR28_00644 0.68 +0.0
687,290 - PFR28_00644 0.68 +3.1
687,290 - PFR28_00644 0.68 -0.0
687,290 - PFR28_00644 0.68 -0.3
687,290 - PFR28_00644 0.68 +0.1
687,290 - PFR28_00644 0.68 -0.4
687,290 - PFR28_00644 0.68 +1.2
687,290 - PFR28_00644 0.68 -0.8
687,290 - PFR28_00644 0.68 +0.3
687,290 - PFR28_00644 0.68 -0.1
687,290 - PFR28_00644 0.68 -0.3
687,290 - PFR28_00644 0.68 +1.2
687,290 - PFR28_00644 0.68 +0.6
687,290 - PFR28_00644 0.68 +1.5
687,290 - PFR28_00644 0.68 +0.7
687,290 - PFR28_00644 0.68 +0.5
687,290 - PFR28_00644 0.68 +1.3
687,290 - PFR28_00644 0.68 +0.5
687,495 + -0.5
687,608 + PFR28_00645 0.11 -0.1
687,608 + PFR28_00645 0.11 -1.2
687,608 + PFR28_00645 0.11 -0.3
687,608 + PFR28_00645 0.11 -1.1
687,609 - PFR28_00645 0.11 +0.4
687,609 - PFR28_00645 0.11 -0.5
687,704 + PFR28_00645 0.19 +0.0
687,704 + PFR28_00645 0.19 +0.5
687,705 - PFR28_00645 0.19 +1.9
687,705 - PFR28_00645 0.19 +1.0
687,705 - PFR28_00645 0.19 +1.9
687,773 + PFR28_00645 0.25 -0.9
687,773 + PFR28_00645 0.25 -0.1
688,092 - PFR28_00645 0.53 +1.0
688,092 - PFR28_00645 0.53 +0.3
688,092 - PFR28_00645 0.53 +1.7
688,181 + PFR28_00645 0.60 -2.2
688,181 + PFR28_00645 0.60 +0.7
688,181 + PFR28_00645 0.60 -0.1
688,182 - PFR28_00645 0.60 +0.6
688,182 - PFR28_00645 0.60 +0.3
688,182 - PFR28_00645 0.60 +0.8
688,258 + PFR28_00645 0.67 +2.7
688,259 - PFR28_00645 0.67 -1.2
688,307 + PFR28_00645 0.71 -0.5
688,307 + PFR28_00645 0.71 +1.4
688,307 + PFR28_00645 0.71 +1.4
688,307 + PFR28_00645 0.71 -0.2
688,307 + PFR28_00645 0.71 -0.2
688,308 - PFR28_00645 0.71 -0.9
688,308 - PFR28_00645 0.71 +0.6
688,310 + PFR28_00645 0.72 -0.3

Or see this region's nucleotide sequence