Strain Fitness in Pseudomonas sp. RS175 around PFR28_04268

Experiment: D-Glucuronic (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucuronic (C) 10 mM
4,869,463	+		PFR28_04266	0.76	-1.0
4,869,464	-		PFR28_04266	0.76	-0.1
4,869,464	-		PFR28_04266	0.76	+1.3
4,869,490	+		PFR28_04266	0.78	+0.9
4,869,490	+		PFR28_04266	0.78	-0.8
4,869,490	+		PFR28_04266	0.78	-0.5
4,869,490	+		PFR28_04266	0.78	+0.7
4,869,491	-		PFR28_04266	0.78	-0.6
4,869,491	-		PFR28_04266	0.78	+0.2
4,869,524	-		PFR28_04266	0.80	+3.9
4,869,526	+		PFR28_04266	0.80	+0.4
4,869,527	-		PFR28_04266	0.80	+0.1
4,869,667	+				-0.3
4,869,668	-				+0.4
4,869,751	+				+0.6
4,869,751	+				-0.0
4,869,751	+				+0.4
4,869,824	-				-1.0
4,869,854	+				+1.0
4,869,855	-				+0.4
4,870,148	+		PFR28_04267	0.59	-1.6
4,870,148	+		PFR28_04267	0.59	-0.4
4,870,148	+		PFR28_04267	0.59	+0.7
4,870,149	-		PFR28_04267	0.59	+0.5
4,870,149	-		PFR28_04267	0.59	-1.0
4,870,149	-		PFR28_04267	0.59	+1.3
4,870,485	+				+1.4
4,870,485	+				+1.0
4,870,485	+				+0.3
4,870,485	+				+1.1
4,870,486	-				+0.1
4,870,486	-				+0.5
4,870,486	-				+0.1
4,870,486	-				+0.5
4,870,486	-				+0.2
4,870,486	-				-0.8
4,870,593	+				-0.5
4,870,593	+				-0.8
4,870,594	-		PFR28_04268	0.10	-1.7
4,870,666	-		PFR28_04268	0.15	+0.7
4,870,666	-		PFR28_04268	0.15	-0.2
4,870,666	-		PFR28_04268	0.15	-0.0
4,870,666	-		PFR28_04268	0.15	-1.7
4,870,678	-		PFR28_04268	0.15	+1.7
4,870,678	-		PFR28_04268	0.15	-1.9
4,870,956	+		PFR28_04268	0.33	+0.3
4,870,957	-		PFR28_04268	0.33	-0.1
4,871,008	-		PFR28_04268	0.36	+0.1
4,871,097	+		PFR28_04268	0.42	+0.7
4,871,098	-		PFR28_04268	0.42	-0.6
4,871,135	+		PFR28_04268	0.44	+0.5
4,871,136	-		PFR28_04268	0.44	-0.5
4,871,220	+		PFR28_04268	0.49	+2.1
4,871,220	+		PFR28_04268	0.49	-0.8
4,871,220	+		PFR28_04268	0.49	+0.2
4,871,220	+		PFR28_04268	0.49	+0.1
4,871,220	+		PFR28_04268	0.49	-0.4
4,871,220	+		PFR28_04268	0.49	-0.6
4,871,220	+		PFR28_04268	0.49	+0.9
4,871,220	+		PFR28_04268	0.49	-0.7
4,871,220	+		PFR28_04268	0.49	+0.2
4,871,220	+		PFR28_04268	0.49	+0.3
4,871,220	+		PFR28_04268	0.49	+0.5
4,871,221	-		PFR28_04268	0.49	+0.2
4,871,221	-		PFR28_04268	0.49	+0.0
4,871,221	-		PFR28_04268	0.49	+0.8
4,871,221	-		PFR28_04268	0.49	+0.2
4,871,221	-		PFR28_04268	0.49	-1.3
4,871,221	-		PFR28_04268	0.49	-0.6
4,871,221	-		PFR28_04268	0.49	-0.3
4,871,221	-		PFR28_04268	0.49	-0.3
4,871,221	-		PFR28_04268	0.49	+0.4
4,871,221	-		PFR28_04268	0.49	+0.6
4,871,221	-		PFR28_04268	0.49	+1.0
4,871,224	+		PFR28_04268	0.49	+0.3
4,871,224	+		PFR28_04268	0.49	+0.9
4,871,225	-		PFR28_04268	0.50	+0.5
4,871,225	-		PFR28_04268	0.50	-0.1
4,871,225	-		PFR28_04268	0.50	+1.5
4,871,225	-		PFR28_04268	0.50	-0.1
4,871,306	+		PFR28_04268	0.55	+0.0
4,871,306	+		PFR28_04268	0.55	+1.3
4,871,306	+		PFR28_04268	0.55	+0.2
4,871,306	+		PFR28_04268	0.55	+1.8
4,871,306	+		PFR28_04268	0.55	+0.6
4,871,307	-		PFR28_04268	0.55	-0.0
4,871,307	-		PFR28_04268	0.55	+0.6
4,871,307	-		PFR28_04268	0.55	-0.7
4,871,327	+		PFR28_04268	0.56	-0.6
4,871,327	+		PFR28_04268	0.56	+1.1
4,871,327	+		PFR28_04268	0.56	-0.1
4,871,327	+		PFR28_04268	0.56	+0.5
4,871,328	-		PFR28_04268	0.56	+0.3
4,871,328	-		PFR28_04268	0.56	+0.1
4,871,328	-		PFR28_04268	0.56	+0.2
4,871,328	-		PFR28_04268	0.56	-0.4
4,871,328	-		PFR28_04268	0.56	-0.1
4,871,328	-		PFR28_04268	0.56	+0.6
4,871,368	-		PFR28_04268	0.59	-0.9
4,871,389	-		PFR28_04268	0.60	+0.2
4,871,436	+		PFR28_04268	0.63	-0.6
4,871,436	+		PFR28_04268	0.63	-0.2
4,871,437	-		PFR28_04268	0.63	-0.2
4,871,558	-		PFR28_04268	0.70	+0.1
4,871,558	-		PFR28_04268	0.70	+0.2
4,871,623	+		PFR28_04268	0.74	+0.1
4,871,631	+		PFR28_04268	0.75	-1.1
4,871,646	+		PFR28_04268	0.76	-0.4
4,871,646	+		PFR28_04268	0.76	+1.7
4,871,646	+		PFR28_04268	0.76	+0.1
4,871,646	+		PFR28_04268	0.76	-0.9
4,871,646	+		PFR28_04268	0.76	+0.6
4,871,646	+		PFR28_04268	0.76	+0.7
4,871,745	+		PFR28_04268	0.82	+0.6
4,871,745	+		PFR28_04268	0.82	+0.0
4,871,746	-		PFR28_04268	0.82	-0.5
4,871,808	-		PFR28_04268	0.86	+1.0
4,871,808	-		PFR28_04268	0.86	+0.2
4,871,946	-				+0.3
4,872,041	-				-3.0
4,872,041	-				+0.1
4,872,053	+				+0.2
4,872,053	+				-0.1
4,872,053	+				-0.9
4,872,053	+				+0.0
4,872,053	+				+0.6
4,872,053	+				-0.7
4,872,053	+				-1.0
4,872,053	+				+0.1
4,872,053	+				+0.3
4,872,053	+				+1.9
4,872,053	+				+0.4
4,872,054	-				+1.0
4,872,054	-				-0.1
4,872,054	-				+0.2
4,872,054	-				+0.4
4,872,054	-				+0.3
4,872,054	-				-0.5
4,872,054	-				+0.5
4,872,054	-				-0.4
4,872,054	-				+0.2
4,872,054	-				-1.3
4,872,054	-				+0.4
4,872,055	+				-0.6
4,872,055	+				+1.1
4,872,055	+				+0.1
4,872,055	+				+1.1
4,872,056	-				-0.1
4,872,056	-				-1.0
4,872,056	-				+0.5
4,872,056	-				-0.0
4,872,056	-				+0.6
4,872,066	+				-0.2
4,872,066	+				+0.5
4,872,066	+				-0.0
4,872,067	-				-0.7
4,872,622	+				-0.7
4,872,622	+				-1.6
4,872,622	+				-1.9
4,872,622	+				+0.7
4,872,622	+				-0.3
4,872,622	+				-0.7
4,872,622	+				-0.7
4,872,623	-				+0.4
4,872,623	-				+0.8
4,872,623	-				+0.3
4,872,623	-				+0.7
4,872,623	-				+0.8
4,872,623	-				-1.7
4,872,994	+		PFR28_04270	0.89	+2.3