Strain Fitness in Pseudomonas sp. RS175 around PFR28_01676

Experiment: D-Glucuronic (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucuronic (C) 10 mM
1,864,965	+		PFR28_01675	0.14	-0.6
1,864,965	+		PFR28_01675	0.14	-1.5
1,865,117	+		PFR28_01675	0.32	+0.2
1,865,117	+		PFR28_01675	0.32	-0.2
1,865,117	+		PFR28_01675	0.32	-1.4
1,865,118	-		PFR28_01675	0.32	-0.9
1,865,118	-		PFR28_01675	0.32	-1.3
1,865,156	+		PFR28_01675	0.37	-1.6
1,865,157	-		PFR28_01675	0.37	+0.4
1,865,294	+		PFR28_01675	0.54	-1.1
1,865,295	-		PFR28_01675	0.54	-0.5
1,865,343	+		PFR28_01675	0.60	-1.3
1,865,344	-		PFR28_01675	0.60	-0.0
1,865,344	-		PFR28_01675	0.60	+0.6
1,865,344	-		PFR28_01675	0.60	+1.7
1,865,344	-		PFR28_01675	0.60	+0.1
1,865,344	-		PFR28_01675	0.60	-1.2
1,865,417	+		PFR28_01675	0.69	-0.9
1,865,417	+		PFR28_01675	0.69	-0.1
1,865,417	+		PFR28_01675	0.69	-0.4
1,865,418	-		PFR28_01675	0.69	+0.8
1,865,418	-		PFR28_01675	0.69	+0.6
1,865,418	-		PFR28_01675	0.69	+0.5
1,865,418	-		PFR28_01675	0.69	+1.1
1,865,418	-		PFR28_01675	0.69	+1.5
1,865,418	-		PFR28_01675	0.69	-0.6
1,865,863	+				-2.2
1,865,863	+				-0.9
1,865,864	-				-1.3
1,865,903	+				-2.3
1,865,903	+				-0.4
1,865,903	+				-2.4
1,865,903	+				-2.4
1,865,903	+				-1.2
1,865,903	+				-1.5
1,865,903	+				-2.8
1,865,903	+				-4.1
1,865,903	+				-2.8
1,865,904	-				-2.4
1,865,904	-				-1.2
1,865,904	-				-2.2
1,865,904	-				-2.6
1,865,905	+				+0.1
1,865,905	+				-1.7
1,865,906	-				-0.8
1,865,906	-				-0.9
1,865,906	-				-2.8
1,865,906	-				-2.0
1,865,935	+				-3.5
1,865,936	-				-4.0
1,866,032	+		PFR28_01676	0.12	-2.5
1,866,032	+		PFR28_01676	0.12	-0.6
1,866,033	-		PFR28_01676	0.12	-2.3
1,866,110	+		PFR28_01676	0.17	-0.6
1,866,110	+		PFR28_01676	0.17	-2.7
1,866,111	-		PFR28_01676	0.17	-2.8
1,866,112	+		PFR28_01676	0.17	-2.2
1,866,112	+		PFR28_01676	0.17	-0.6
1,866,112	+		PFR28_01676	0.17	+0.6
1,866,112	+		PFR28_01676	0.17	-1.2
1,866,112	+		PFR28_01676	0.17	-1.8
1,866,112	+		PFR28_01676	0.17	-1.2
1,866,112	+		PFR28_01676	0.17	-1.4
1,866,112	+		PFR28_01676	0.17	-0.2
1,866,112	+		PFR28_01676	0.17	+0.4
1,866,112	+		PFR28_01676	0.17	-2.0
1,866,112	+		PFR28_01676	0.17	-1.8
1,866,112	+		PFR28_01676	0.17	-2.1
1,866,112	+		PFR28_01676	0.17	+1.4
1,866,112	+		PFR28_01676	0.17	-2.6
1,866,112	+		PFR28_01676	0.17	-2.6
1,866,112	+		PFR28_01676	0.17	-2.3
1,866,112	+		PFR28_01676	0.17	-1.4
1,866,113	-		PFR28_01676	0.17	-1.8
1,866,113	-		PFR28_01676	0.17	-2.9
1,866,113	-		PFR28_01676	0.17	+0.4
1,866,113	-		PFR28_01676	0.17	-0.9
1,866,113	-		PFR28_01676	0.17	-2.4
1,866,113	-		PFR28_01676	0.17	-1.1
1,866,113	-		PFR28_01676	0.17	-3.8
1,866,113	-		PFR28_01676	0.17	-1.4
1,866,113	-		PFR28_01676	0.17	-0.2
1,866,113	-		PFR28_01676	0.17	-1.8
1,866,113	-		PFR28_01676	0.17	-2.7
1,866,113	-		PFR28_01676	0.17	-1.4
1,866,113	-		PFR28_01676	0.17	-2.8
1,866,113	-		PFR28_01676	0.17	-0.7
1,866,113	-		PFR28_01676	0.17	-3.6
1,866,113	-		PFR28_01676	0.17	-0.2
1,866,113	-		PFR28_01676	0.17	-1.7
1,866,113	-		PFR28_01676	0.17	-1.5
1,866,113	-		PFR28_01676	0.17	-0.6
1,866,113	-		PFR28_01676	0.17	-3.5
1,866,113	-		PFR28_01676	0.17	-1.8
1,866,361	-		PFR28_01676	0.34	-1.2
1,866,361	-		PFR28_01676	0.34	-3.9
1,866,519	+		PFR28_01676	0.44	-2.8
1,866,519	+		PFR28_01676	0.44	-2.1
1,866,519	+		PFR28_01676	0.44	-2.3
1,866,519	+		PFR28_01676	0.44	+0.2
1,866,520	-		PFR28_01676	0.44	-3.4
1,866,520	-		PFR28_01676	0.44	-2.8
1,866,520	-		PFR28_01676	0.44	-1.1
1,866,702	+		PFR28_01676	0.56	-4.3
1,866,702	+		PFR28_01676	0.56	-0.4
1,866,703	-		PFR28_01676	0.57	-3.1
1,866,703	-		PFR28_01676	0.57	-3.6
1,866,860	-		PFR28_01676	0.67	-1.7
1,866,868	+		PFR28_01676	0.68	-3.0
1,867,033	+		PFR28_01676	0.79	-1.8
1,867,033	+		PFR28_01676	0.79	-2.5
1,867,034	-		PFR28_01676	0.79	-1.7
1,867,034	-		PFR28_01676	0.79	+0.6
1,867,034	-		PFR28_01676	0.79	-2.3
1,867,034	-		PFR28_01676	0.79	-4.0
1,867,034	-		PFR28_01676	0.79	-1.5
1,867,034	-		PFR28_01676	0.79	-0.9
1,867,079	+		PFR28_01676	0.82	-0.9
1,867,080	-		PFR28_01676	0.82	-0.6
1,867,096	+		PFR28_01676	0.83	-1.9
1,867,112	+		PFR28_01676	0.84	-1.9
1,867,112	+		PFR28_01676	0.84	-2.3
1,867,369	+				-2.4
1,867,370	-				+0.8
1,867,370	-				-1.5
1,867,373	+				-2.2
1,867,373	+				-1.7
1,867,417	-				+0.2
1,867,417	-				-0.7
1,867,427	-				-0.1
1,867,469	+				-0.9
1,867,470	-				-0.3
1,867,470	-				-1.3
1,867,470	-				-2.5
1,867,470	-				-1.4
1,867,470	-				-0.9
1,867,470	-				-0.6
1,867,470	-				+2.2
1,867,735	+		PFR28_01677	0.23	-1.4
1,867,735	+		PFR28_01677	0.23	-0.3
1,867,735	+		PFR28_01677	0.23	+0.6
1,867,736	-		PFR28_01677	0.23	+1.2
1,867,736	-		PFR28_01677	0.23	-0.4
1,867,789	+		PFR28_01677	0.27	+2.0
1,868,176	+		PFR28_01677	0.57	-1.3
1,868,176	+		PFR28_01677	0.57	+0.1
1,868,176	+		PFR28_01677	0.57	+0.6
1,868,176	+		PFR28_01677	0.57	+0.5
1,868,177	-		PFR28_01677	0.57	-1.8
1,868,177	-		PFR28_01677	0.57	+0.7
1,868,177	-		PFR28_01677	0.57	-1.0
1,868,177	-		PFR28_01677	0.57	-1.9
1,868,177	-		PFR28_01677	0.57	-0.8