Strain Fitness in Erwinia amylovora T8 around OLJFJH_12720

Experiment: Matrix:KB soft agar;Phage:PBS;Temp:17;Samp:24-9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_12715 and OLJFJH_12720 overlap by 1 nucleotidesOLJFJH_12720 and OLJFJH_12725 are separated by 134 nucleotides OLJFJH_12715: OLJFJH_12715 - flagellar transcriptional regulator FlhD, at 2,678,351 to 2,678,704 _12715 OLJFJH_12720: OLJFJH_12720 - flagellar transcriptional regulator FlhC, at 2,678,704 to 2,679,282 _12720 OLJFJH_12725: OLJFJH_12725 - flagellar motor stator protein MotA, at 2,679,417 to 2,680,301 _12725 Position (kb) 2678 2679 2680Strain fitness (log2 ratio) -2 -1 0 1 2at 2677.771 kb on + strandat 2677.771 kb on + strandat 2677.953 kb on - strandat 2678.060 kb on + strandat 2678.060 kb on + strandat 2678.060 kb on + strandat 2678.061 kb on - strandat 2678.061 kb on - strandat 2678.066 kb on + strandat 2678.102 kb on + strandat 2678.108 kb on + strandat 2678.112 kb on - strandat 2678.131 kb on + strandat 2678.189 kb on + strandat 2678.193 kb on + strandat 2678.193 kb on + strandat 2678.194 kb on - strandat 2678.194 kb on - strandat 2678.204 kb on + strandat 2678.205 kb on - strandat 2678.235 kb on + strandat 2678.235 kb on + strandat 2678.277 kb on + strandat 2678.278 kb on - strandat 2678.283 kb on + strandat 2678.284 kb on - strandat 2678.324 kb on - strandat 2678.404 kb on - strand, within OLJFJH_12715at 2678.473 kb on + strand, within OLJFJH_12715at 2678.516 kb on - strand, within OLJFJH_12715at 2678.653 kb on - strand, within OLJFJH_12715at 2678.823 kb on - strand, within OLJFJH_12720at 2678.826 kb on + strand, within OLJFJH_12720at 2678.831 kb on + strand, within OLJFJH_12720at 2678.831 kb on + strand, within OLJFJH_12720at 2678.831 kb on + strand, within OLJFJH_12720at 2678.832 kb on - strand, within OLJFJH_12720at 2678.834 kb on - strand, within OLJFJH_12720at 2678.834 kb on - strand, within OLJFJH_12720at 2678.835 kb on + strand, within OLJFJH_12720at 2678.836 kb on - strand, within OLJFJH_12720at 2678.836 kb on - strand, within OLJFJH_12720at 2678.967 kb on - strand, within OLJFJH_12720at 2679.204 kb on - strand, within OLJFJH_12720at 2679.204 kb on - strand, within OLJFJH_12720at 2679.213 kb on + strand, within OLJFJH_12720at 2679.280 kb on + strandat 2679.473 kb on - strandat 2679.479 kb on - strandat 2679.479 kb on - strandat 2679.524 kb on + strand, within OLJFJH_12725at 2679.625 kb on - strand, within OLJFJH_12725at 2679.639 kb on + strand, within OLJFJH_12725at 2679.639 kb on + strand, within OLJFJH_12725at 2679.791 kb on + strand, within OLJFJH_12725at 2679.792 kb on - strand, within OLJFJH_12725at 2679.801 kb on + strand, within OLJFJH_12725at 2679.801 kb on + strand, within OLJFJH_12725at 2679.827 kb on + strand, within OLJFJH_12725at 2680.036 kb on + strand, within OLJFJH_12725at 2680.066 kb on - strand, within OLJFJH_12725at 2680.073 kb on + strand, within OLJFJH_12725at 2680.202 kb on + strand, within OLJFJH_12725at 2680.202 kb on + strand, within OLJFJH_12725at 2680.203 kb on - strand, within OLJFJH_12725at 2680.203 kb on - strand, within OLJFJH_12725at 2680.212 kb on + strand, within OLJFJH_12725at 2680.212 kb on + strand, within OLJFJH_12725at 2680.255 kb on + strandat 2680.255 kb on + strandat 2680.255 kb on + strandat 2680.255 kb on + strandat 2680.255 kb on + strandat 2680.256 kb on - strandat 2680.256 kb on - strandat 2680.256 kb on - strandat 2680.256 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:PBS;Temp:17;Samp:24-9
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2,677,771 + +0.7
2,677,771 + +0.6
2,677,953 - +1.0
2,678,060 + +0.0
2,678,060 + +0.9
2,678,060 + -1.0
2,678,061 - +0.5
2,678,061 - +1.7
2,678,066 + -0.3
2,678,102 + -0.8
2,678,108 + +0.0
2,678,112 - -0.2
2,678,131 + +0.1
2,678,189 + +0.3
2,678,193 + -0.6
2,678,193 + -0.8
2,678,194 - +0.0
2,678,194 - -0.3
2,678,204 + -0.9
2,678,205 - -0.4
2,678,235 + -0.2
2,678,235 + -0.8
2,678,277 + -2.4
2,678,278 - -0.2
2,678,283 + -1.5
2,678,284 - -0.1
2,678,324 - +0.2
2,678,404 - OLJFJH_12715 0.15 -0.1
2,678,473 + OLJFJH_12715 0.34 -0.1
2,678,516 - OLJFJH_12715 0.47 +0.2
2,678,653 - OLJFJH_12715 0.85 -0.4
2,678,823 - OLJFJH_12720 0.21 -1.0
2,678,826 + OLJFJH_12720 0.21 -0.3
2,678,831 + OLJFJH_12720 0.22 -0.6
2,678,831 + OLJFJH_12720 0.22 +0.0
2,678,831 + OLJFJH_12720 0.22 -0.9
2,678,832 - OLJFJH_12720 0.22 -0.5
2,678,834 - OLJFJH_12720 0.22 -0.1
2,678,834 - OLJFJH_12720 0.22 -0.3
2,678,835 + OLJFJH_12720 0.23 -0.5
2,678,836 - OLJFJH_12720 0.23 -1.5
2,678,836 - OLJFJH_12720 0.23 +0.1
2,678,967 - OLJFJH_12720 0.45 +0.3
2,679,204 - OLJFJH_12720 0.86 +0.3
2,679,204 - OLJFJH_12720 0.86 -0.2
2,679,213 + OLJFJH_12720 0.88 -0.5
2,679,280 + -0.5
2,679,473 - +2.2
2,679,479 - -1.0
2,679,479 - -0.7
2,679,524 + OLJFJH_12725 0.12 -1.3
2,679,625 - OLJFJH_12725 0.24 -1.3
2,679,639 + OLJFJH_12725 0.25 -1.3
2,679,639 + OLJFJH_12725 0.25 -0.9
2,679,791 + OLJFJH_12725 0.42 -1.3
2,679,792 - OLJFJH_12725 0.42 -1.4
2,679,801 + OLJFJH_12725 0.43 -0.6
2,679,801 + OLJFJH_12725 0.43 -1.4
2,679,827 + OLJFJH_12725 0.46 -1.8
2,680,036 + OLJFJH_12725 0.70 -0.8
2,680,066 - OLJFJH_12725 0.73 -1.1
2,680,073 + OLJFJH_12725 0.74 -1.5
2,680,202 + OLJFJH_12725 0.89 -0.8
2,680,202 + OLJFJH_12725 0.89 -0.0
2,680,203 - OLJFJH_12725 0.89 -1.6
2,680,203 - OLJFJH_12725 0.89 -1.3
2,680,212 + OLJFJH_12725 0.90 -0.5
2,680,212 + OLJFJH_12725 0.90 -0.3
2,680,255 + -0.6
2,680,255 + -1.2
2,680,255 + -0.8
2,680,255 + -1.0
2,680,255 + -0.6
2,680,256 - -1.0
2,680,256 - -1.3
2,680,256 - -1.2
2,680,256 - -1.6

Or see this region's nucleotide sequence