Strain Fitness in Erwinia amylovora T8 around OLJFJH_15680

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15670 and OLJFJH_15675 are separated by 76 nucleotidesOLJFJH_15675 and OLJFJH_15680 are separated by 521 nucleotidesOLJFJH_15680 and OLJFJH_15685 are separated by 105 nucleotides OLJFJH_15670: OLJFJH_15670 - dihydroorotase, at 3,302,040 to 3,303,092 _15670 OLJFJH_15675: OLJFJH_15675 - DNA damage-inducible protein I, at 3,303,169 to 3,303,414 _15675 OLJFJH_15680: OLJFJH_15680 - biofilm formation regulator BssS, at 3,303,936 to 3,304,190 _15680 OLJFJH_15685: OLJFJH_15685 - N-methyl-L-tryptophan oxidase, at 3,304,296 to 3,305,420 _15685 Position (kb) 3303 3304 3305Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3303.106 kb on + strandat 3303.109 kb on + strandat 3303.109 kb on + strandat 3303.139 kb on - strandat 3303.253 kb on - strand, within OLJFJH_15675at 3303.259 kb on - strand, within OLJFJH_15675at 3303.279 kb on + strand, within OLJFJH_15675at 3303.279 kb on + strand, within OLJFJH_15675at 3303.283 kb on - strand, within OLJFJH_15675at 3303.283 kb on - strand, within OLJFJH_15675at 3303.596 kb on + strandat 3303.597 kb on - strandat 3303.597 kb on - strandat 3303.599 kb on + strandat 3303.704 kb on - strandat 3303.704 kb on - strandat 3303.714 kb on + strandat 3303.715 kb on - strandat 3303.717 kb on + strandat 3303.717 kb on + strandat 3303.718 kb on - strandat 3303.718 kb on - strandat 3303.718 kb on - strandat 3303.718 kb on - strandat 3303.727 kb on - strandat 3303.735 kb on + strandat 3303.735 kb on + strandat 3303.776 kb on - strandat 3303.846 kb on - strandat 3303.932 kb on + strandat 3303.934 kb on + strandat 3304.006 kb on - strand, within OLJFJH_15680at 3304.115 kb on + strand, within OLJFJH_15680at 3304.115 kb on + strand, within OLJFJH_15680at 3304.116 kb on - strand, within OLJFJH_15680at 3304.122 kb on - strand, within OLJFJH_15680at 3304.176 kb on + strandat 3304.249 kb on - strandat 3304.278 kb on + strandat 3304.279 kb on - strandat 3304.279 kb on - strandat 3304.282 kb on + strandat 3304.283 kb on - strandat 3304.309 kb on + strandat 3304.353 kb on + strandat 3304.354 kb on - strandat 3304.354 kb on - strandat 3304.444 kb on + strand, within OLJFJH_15685at 3304.445 kb on - strand, within OLJFJH_15685at 3304.445 kb on - strand, within OLJFJH_15685at 3304.474 kb on - strand, within OLJFJH_15685at 3304.474 kb on - strand, within OLJFJH_15685at 3304.604 kb on - strand, within OLJFJH_15685at 3304.644 kb on - strand, within OLJFJH_15685at 3304.696 kb on - strand, within OLJFJH_15685at 3304.696 kb on - strand, within OLJFJH_15685at 3304.797 kb on - strand, within OLJFJH_15685at 3304.879 kb on + strand, within OLJFJH_15685at 3304.879 kb on + strand, within OLJFJH_15685at 3304.880 kb on - strand, within OLJFJH_15685at 3304.880 kb on - strand, within OLJFJH_15685at 3304.991 kb on + strand, within OLJFJH_15685at 3305.035 kb on - strand, within OLJFJH_15685at 3305.160 kb on - strand, within OLJFJH_15685

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:17;Samp:23-2
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3,303,106 + +0.7
3,303,109 + -0.2
3,303,109 + +0.3
3,303,139 - +0.4
3,303,253 - OLJFJH_15675 0.34 -0.3
3,303,259 - OLJFJH_15675 0.37 -0.8
3,303,279 + OLJFJH_15675 0.45 -0.2
3,303,279 + OLJFJH_15675 0.45 -0.4
3,303,283 - OLJFJH_15675 0.46 -0.5
3,303,283 - OLJFJH_15675 0.46 +0.1
3,303,596 + -1.1
3,303,597 - +0.3
3,303,597 - +3.0
3,303,599 + -0.1
3,303,704 - +0.0
3,303,704 - -1.4
3,303,714 + +0.2
3,303,715 - -1.2
3,303,717 + +2.3
3,303,717 + +0.2
3,303,718 - +0.2
3,303,718 - +0.2
3,303,718 - -0.3
3,303,718 - +0.4
3,303,727 - -0.0
3,303,735 + -0.4
3,303,735 + +0.5
3,303,776 - +0.5
3,303,846 - +0.0
3,303,932 + +0.0
3,303,934 + +0.3
3,304,006 - OLJFJH_15680 0.27 +0.4
3,304,115 + OLJFJH_15680 0.70 +1.7
3,304,115 + OLJFJH_15680 0.70 -0.2
3,304,116 - OLJFJH_15680 0.71 +1.4
3,304,122 - OLJFJH_15680 0.73 +0.8
3,304,176 + -0.1
3,304,249 - +0.2
3,304,278 + -0.1
3,304,279 - +0.5
3,304,279 - +0.1
3,304,282 + -0.1
3,304,283 - -0.1
3,304,309 + -0.0
3,304,353 + +0.2
3,304,354 - -0.2
3,304,354 - -0.4
3,304,444 + OLJFJH_15685 0.13 +0.0
3,304,445 - OLJFJH_15685 0.13 +0.5
3,304,445 - OLJFJH_15685 0.13 +0.3
3,304,474 - OLJFJH_15685 0.16 -0.3
3,304,474 - OLJFJH_15685 0.16 -0.2
3,304,604 - OLJFJH_15685 0.27 -0.3
3,304,644 - OLJFJH_15685 0.31 +0.7
3,304,696 - OLJFJH_15685 0.36 +0.4
3,304,696 - OLJFJH_15685 0.36 -0.1
3,304,797 - OLJFJH_15685 0.45 +0.4
3,304,879 + OLJFJH_15685 0.52 -1.7
3,304,879 + OLJFJH_15685 0.52 -0.0
3,304,880 - OLJFJH_15685 0.52 -2.1
3,304,880 - OLJFJH_15685 0.52 -0.5
3,304,991 + OLJFJH_15685 0.62 +0.1
3,305,035 - OLJFJH_15685 0.66 +0.3
3,305,160 - OLJFJH_15685 0.77 +0.3

Or see this region's nucleotide sequence