Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_10355 and OLJFJH_10360 are separated by 156 nucleotides OLJFJH_10360 and OLJFJH_10365 are separated by 139 nucleotides
OLJFJH_10355: OLJFJH_10355 - tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ, at 2,135,409 to 2,136,134
_10355
OLJFJH_10360: OLJFJH_10360 - Fe-S cluster assembly transcriptional regulator IscR, at 2,136,291 to 2,136,788
_10360
OLJFJH_10365: OLJFJH_10365 - IscS subfamily cysteine desulfurase, at 2,136,928 to 2,138,127
_10365
Position (kb)
2136
2137 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2135.363 kb on + strand at 2135.377 kb on + strand at 2135.378 kb on - strand at 2135.408 kb on + strand at 2135.408 kb on + strand at 2135.409 kb on - strand at 2135.409 kb on - strand at 2135.409 kb on - strand at 2135.498 kb on - strand, within OLJFJH_10355 at 2135.509 kb on - strand, within OLJFJH_10355 at 2135.509 kb on - strand, within OLJFJH_10355 at 2135.601 kb on - strand, within OLJFJH_10355 at 2135.701 kb on + strand, within OLJFJH_10355 at 2135.826 kb on + strand, within OLJFJH_10355 at 2135.827 kb on - strand, within OLJFJH_10355 at 2135.868 kb on + strand, within OLJFJH_10355 at 2135.887 kb on - strand, within OLJFJH_10355 at 2135.920 kb on - strand, within OLJFJH_10355 at 2135.920 kb on - strand, within OLJFJH_10355 at 2135.920 kb on - strand, within OLJFJH_10355 at 2135.973 kb on - strand, within OLJFJH_10355 at 2136.029 kb on - strand, within OLJFJH_10355 at 2136.029 kb on - strand, within OLJFJH_10355 at 2136.140 kb on + strand at 2136.253 kb on - strand at 2136.380 kb on + strand, within OLJFJH_10360 at 2136.411 kb on + strand, within OLJFJH_10360 at 2136.662 kb on + strand, within OLJFJH_10360 at 2136.870 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-3 remove 2,135,363 + -1.4 2,135,377 + -0.1 2,135,378 - -0.5 2,135,408 + -0.1 2,135,408 + -0.1 2,135,409 - -0.1 2,135,409 - -0.5 2,135,409 - +0.4 2,135,498 - OLJFJH_10355 0.12 +0.2 2,135,509 - OLJFJH_10355 0.14 -0.2 2,135,509 - OLJFJH_10355 0.14 -0.5 2,135,601 - OLJFJH_10355 0.26 -0.7 2,135,701 + OLJFJH_10355 0.40 -0.1 2,135,826 + OLJFJH_10355 0.57 -0.3 2,135,827 - OLJFJH_10355 0.58 +1.0 2,135,868 + OLJFJH_10355 0.63 -0.2 2,135,887 - OLJFJH_10355 0.66 +0.2 2,135,920 - OLJFJH_10355 0.70 -0.8 2,135,920 - OLJFJH_10355 0.70 +0.1 2,135,920 - OLJFJH_10355 0.70 -0.3 2,135,973 - OLJFJH_10355 0.78 -0.1 2,136,029 - OLJFJH_10355 0.85 -0.4 2,136,029 - OLJFJH_10355 0.85 -0.4 2,136,140 + -1.1 2,136,253 - -0.4 2,136,380 + OLJFJH_10360 0.18 -0.9 2,136,411 + OLJFJH_10360 0.24 -4.0 2,136,662 + OLJFJH_10360 0.74 -1.2 2,136,870 + +0.0
Or see this region's nucleotide sequence