Strain Fitness in Pseudomonas sp. RS175 around PFR28_01096

Experiment: gluconate (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_01095 and PFR28_01096 are separated by 95 nucleotidesPFR28_01096 and PFR28_01097 are separated by 144 nucleotides PFR28_01095: PFR28_01095 - Cbb3-type cytochrome c oxidase subunit CcoN1, at 1,206,402 to 1,207,826 _01095 PFR28_01096: PFR28_01096 - hypothetical protein, at 1,207,922 to 1,208,620 _01096 PFR28_01097: PFR28_01097 - Aerotaxis receptor, at 1,208,765 to 1,210,330 _01097 Position (kb) 1207 1208 1209Strain fitness (log2 ratio) -2 -1 0 1 2at 1206.930 kb on - strand, within PFR28_01095at 1206.930 kb on - strand, within PFR28_01095at 1206.930 kb on - strand, within PFR28_01095at 1207.123 kb on + strand, within PFR28_01095at 1207.123 kb on + strand, within PFR28_01095at 1207.156 kb on + strand, within PFR28_01095at 1207.156 kb on + strand, within PFR28_01095at 1207.156 kb on + strand, within PFR28_01095at 1207.157 kb on - strand, within PFR28_01095at 1207.157 kb on - strand, within PFR28_01095at 1207.159 kb on + strand, within PFR28_01095at 1207.159 kb on + strand, within PFR28_01095at 1207.159 kb on + strand, within PFR28_01095at 1207.159 kb on + strand, within PFR28_01095at 1207.160 kb on - strand, within PFR28_01095at 1207.160 kb on - strand, within PFR28_01095at 1207.160 kb on - strand, within PFR28_01095at 1207.250 kb on - strand, within PFR28_01095at 1207.258 kb on + strand, within PFR28_01095at 1207.259 kb on - strand, within PFR28_01095at 1207.354 kb on + strand, within PFR28_01095at 1207.354 kb on + strand, within PFR28_01095at 1207.354 kb on + strand, within PFR28_01095at 1207.354 kb on + strand, within PFR28_01095at 1207.354 kb on + strand, within PFR28_01095at 1207.355 kb on - strand, within PFR28_01095at 1207.355 kb on - strand, within PFR28_01095at 1207.355 kb on - strand, within PFR28_01095at 1207.355 kb on - strand, within PFR28_01095at 1207.406 kb on - strand, within PFR28_01095at 1207.460 kb on - strand, within PFR28_01095at 1207.591 kb on + strand, within PFR28_01095at 1207.684 kb on - strandat 1207.769 kb on + strandat 1207.770 kb on - strandat 1207.770 kb on - strandat 1207.795 kb on + strandat 1207.795 kb on + strandat 1207.795 kb on + strandat 1207.795 kb on + strandat 1207.795 kb on + strandat 1207.795 kb on + strandat 1207.796 kb on - strandat 1207.801 kb on + strandat 1207.801 kb on + strandat 1207.801 kb on + strandat 1207.802 kb on - strandat 1207.802 kb on - strandat 1207.814 kb on + strandat 1207.814 kb on + strandat 1207.814 kb on + strandat 1207.814 kb on + strandat 1207.814 kb on + strandat 1207.815 kb on - strandat 1207.815 kb on - strandat 1207.815 kb on - strandat 1207.895 kb on + strandat 1207.895 kb on + strandat 1207.895 kb on + strandat 1207.895 kb on + strandat 1207.896 kb on - strandat 1207.897 kb on + strandat 1207.897 kb on + strandat 1207.897 kb on + strandat 1207.898 kb on - strandat 1207.898 kb on - strandat 1207.898 kb on - strandat 1207.898 kb on - strandat 1207.992 kb on + strand, within PFR28_01096at 1208.144 kb on + strand, within PFR28_01096at 1208.144 kb on + strand, within PFR28_01096at 1208.144 kb on + strand, within PFR28_01096at 1208.144 kb on + strand, within PFR28_01096at 1208.144 kb on + strand, within PFR28_01096at 1208.144 kb on + strand, within PFR28_01096at 1208.145 kb on - strand, within PFR28_01096at 1208.145 kb on - strand, within PFR28_01096at 1208.145 kb on - strand, within PFR28_01096at 1208.226 kb on - strand, within PFR28_01096at 1208.243 kb on + strand, within PFR28_01096at 1208.243 kb on + strand, within PFR28_01096at 1208.243 kb on + strand, within PFR28_01096at 1208.243 kb on + strand, within PFR28_01096at 1208.244 kb on - strand, within PFR28_01096at 1208.244 kb on - strand, within PFR28_01096at 1208.244 kb on - strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.354 kb on + strand, within PFR28_01096at 1208.355 kb on - strand, within PFR28_01096at 1208.355 kb on - strand, within PFR28_01096at 1208.355 kb on - strand, within PFR28_01096at 1208.355 kb on - strand, within PFR28_01096at 1208.355 kb on - strand, within PFR28_01096at 1208.471 kb on + strand, within PFR28_01096at 1208.471 kb on + strand, within PFR28_01096at 1208.471 kb on + strand, within PFR28_01096at 1208.472 kb on - strand, within PFR28_01096at 1208.472 kb on - strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.473 kb on + strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.474 kb on - strand, within PFR28_01096at 1208.716 kb on - strandat 1208.794 kb on - strandat 1208.794 kb on - strandat 1208.800 kb on + strandat 1208.800 kb on + strandat 1208.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction gluconate (C) 10 mM
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1,206,930 - PFR28_01095 0.37 -0.7
1,206,930 - PFR28_01095 0.37 -1.1
1,206,930 - PFR28_01095 0.37 -1.8
1,207,123 + PFR28_01095 0.51 -2.0
1,207,123 + PFR28_01095 0.51 -0.4
1,207,156 + PFR28_01095 0.53 -0.1
1,207,156 + PFR28_01095 0.53 +1.2
1,207,156 + PFR28_01095 0.53 +0.2
1,207,157 - PFR28_01095 0.53 -1.0
1,207,157 - PFR28_01095 0.53 -1.4
1,207,159 + PFR28_01095 0.53 -0.4
1,207,159 + PFR28_01095 0.53 +0.3
1,207,159 + PFR28_01095 0.53 -1.0
1,207,159 + PFR28_01095 0.53 -1.4
1,207,160 - PFR28_01095 0.53 -0.4
1,207,160 - PFR28_01095 0.53 +0.6
1,207,160 - PFR28_01095 0.53 -1.1
1,207,250 - PFR28_01095 0.60 -0.1
1,207,258 + PFR28_01095 0.60 +1.2
1,207,259 - PFR28_01095 0.60 -0.9
1,207,354 + PFR28_01095 0.67 -1.8
1,207,354 + PFR28_01095 0.67 -1.6
1,207,354 + PFR28_01095 0.67 +0.6
1,207,354 + PFR28_01095 0.67 +0.6
1,207,354 + PFR28_01095 0.67 -2.4
1,207,355 - PFR28_01095 0.67 +0.8
1,207,355 - PFR28_01095 0.67 -0.4
1,207,355 - PFR28_01095 0.67 +2.2
1,207,355 - PFR28_01095 0.67 -1.1
1,207,406 - PFR28_01095 0.70 -0.4
1,207,460 - PFR28_01095 0.74 -0.8
1,207,591 + PFR28_01095 0.83 -1.1
1,207,684 - +1.8
1,207,769 + +0.5
1,207,770 - +0.4
1,207,770 - -0.2
1,207,795 + -0.6
1,207,795 + -0.6
1,207,795 + +1.6
1,207,795 + -0.3
1,207,795 + +0.2
1,207,795 + -1.1
1,207,796 - -0.2
1,207,801 + -0.1
1,207,801 + +1.2
1,207,801 + +1.2
1,207,802 - +1.6
1,207,802 - -1.8
1,207,814 + +0.5
1,207,814 + -0.1
1,207,814 + +0.2
1,207,814 + -0.8
1,207,814 + -1.1
1,207,815 - +0.5
1,207,815 - -2.2
1,207,815 - -0.6
1,207,895 + +1.2
1,207,895 + +0.2
1,207,895 + +0.2
1,207,895 + +0.2
1,207,896 - +0.9
1,207,897 + +0.5
1,207,897 + -1.4
1,207,897 + -0.8
1,207,898 - -0.1
1,207,898 - -0.7
1,207,898 - +0.2
1,207,898 - -0.1
1,207,992 + PFR28_01096 0.10 +1.2
1,208,144 + PFR28_01096 0.32 -0.8
1,208,144 + PFR28_01096 0.32 +0.1
1,208,144 + PFR28_01096 0.32 +0.4
1,208,144 + PFR28_01096 0.32 +0.9
1,208,144 + PFR28_01096 0.32 +0.3
1,208,144 + PFR28_01096 0.32 +0.6
1,208,145 - PFR28_01096 0.32 +0.4
1,208,145 - PFR28_01096 0.32 -0.4
1,208,145 - PFR28_01096 0.32 -1.6
1,208,226 - PFR28_01096 0.43 -0.0
1,208,243 + PFR28_01096 0.46 -0.1
1,208,243 + PFR28_01096 0.46 +0.4
1,208,243 + PFR28_01096 0.46 -0.2
1,208,243 + PFR28_01096 0.46 -0.8
1,208,244 - PFR28_01096 0.46 -1.9
1,208,244 - PFR28_01096 0.46 -0.3
1,208,244 - PFR28_01096 0.46 -0.1
1,208,354 + PFR28_01096 0.62 -0.8
1,208,354 + PFR28_01096 0.62 -0.1
1,208,354 + PFR28_01096 0.62 +0.1
1,208,354 + PFR28_01096 0.62 -0.0
1,208,354 + PFR28_01096 0.62 +0.2
1,208,354 + PFR28_01096 0.62 +0.2
1,208,354 + PFR28_01096 0.62 -0.4
1,208,354 + PFR28_01096 0.62 -0.0
1,208,355 - PFR28_01096 0.62 -0.5
1,208,355 - PFR28_01096 0.62 -0.0
1,208,355 - PFR28_01096 0.62 -0.2
1,208,355 - PFR28_01096 0.62 -0.4
1,208,355 - PFR28_01096 0.62 -0.0
1,208,471 + PFR28_01096 0.79 +0.3
1,208,471 + PFR28_01096 0.79 +1.0
1,208,471 + PFR28_01096 0.79 -1.0
1,208,472 - PFR28_01096 0.79 -0.5
1,208,472 - PFR28_01096 0.79 -0.4
1,208,473 + PFR28_01096 0.79 +0.5
1,208,473 + PFR28_01096 0.79 +1.3
1,208,473 + PFR28_01096 0.79 -1.5
1,208,473 + PFR28_01096 0.79 -0.2
1,208,473 + PFR28_01096 0.79 -0.5
1,208,473 + PFR28_01096 0.79 -0.2
1,208,473 + PFR28_01096 0.79 -0.0
1,208,473 + PFR28_01096 0.79 +0.1
1,208,473 + PFR28_01096 0.79 -1.0
1,208,473 + PFR28_01096 0.79 +0.4
1,208,474 - PFR28_01096 0.79 +0.4
1,208,474 - PFR28_01096 0.79 +1.3
1,208,474 - PFR28_01096 0.79 +1.0
1,208,474 - PFR28_01096 0.79 -1.4
1,208,474 - PFR28_01096 0.79 -0.8
1,208,474 - PFR28_01096 0.79 +0.1
1,208,474 - PFR28_01096 0.79 +0.6
1,208,474 - PFR28_01096 0.79 -1.0
1,208,716 - -0.2
1,208,794 - -0.8
1,208,794 - -0.1
1,208,800 + +0.6
1,208,800 + -0.6
1,208,809 + -0.1

Or see this region's nucleotide sequence