Strain Fitness in Erwinia amylovora T8 around OLJFJH_16195

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_16190 and OLJFJH_16195 are separated by 134 nucleotidesOLJFJH_16195 and OLJFJH_16200 overlap by 4 nucleotides OLJFJH_16190: OLJFJH_16190 - thioredoxin-disulfide reductase, at 3,418,483 to 3,419,457 _16190 OLJFJH_16195: OLJFJH_16195 - cysteine/glutathione ABC transporter permease/ATP-binding protein CydD, at 3,419,592 to 3,421,361 _16195 OLJFJH_16200: OLJFJH_16200 - cysteine/glutathione ABC transporter ATP-binding protein/permease CydC, at 3,421,358 to 3,423,088 _16200 Position (kb) 3419 3420 3421 3422Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3418.704 kb on + strand, within OLJFJH_16190at 3418.711 kb on - strand, within OLJFJH_16190at 3418.792 kb on + strand, within OLJFJH_16190at 3418.792 kb on + strand, within OLJFJH_16190at 3418.793 kb on - strand, within OLJFJH_16190at 3418.793 kb on - strand, within OLJFJH_16190at 3418.793 kb on - strand, within OLJFJH_16190at 3418.867 kb on - strand, within OLJFJH_16190at 3418.881 kb on - strand, within OLJFJH_16190at 3418.881 kb on - strand, within OLJFJH_16190at 3418.881 kb on - strand, within OLJFJH_16190at 3419.266 kb on + strand, within OLJFJH_16190at 3419.267 kb on - strand, within OLJFJH_16190at 3419.268 kb on + strand, within OLJFJH_16190at 3419.268 kb on + strand, within OLJFJH_16190at 3419.268 kb on + strand, within OLJFJH_16190at 3419.269 kb on - strand, within OLJFJH_16190at 3419.301 kb on + strand, within OLJFJH_16190at 3419.325 kb on - strand, within OLJFJH_16190at 3419.357 kb on - strand, within OLJFJH_16190at 3419.461 kb on - strandat 3419.469 kb on + strandat 3419.470 kb on - strandat 3419.520 kb on - strandat 3419.520 kb on - strandat 3419.837 kb on - strand, within OLJFJH_16195at 3419.872 kb on + strand, within OLJFJH_16195at 3419.998 kb on - strand, within OLJFJH_16195at 3419.998 kb on - strand, within OLJFJH_16195at 3420.000 kb on + strand, within OLJFJH_16195at 3420.095 kb on - strand, within OLJFJH_16195at 3420.235 kb on + strand, within OLJFJH_16195at 3420.235 kb on + strand, within OLJFJH_16195at 3420.236 kb on - strand, within OLJFJH_16195at 3420.391 kb on - strand, within OLJFJH_16195at 3420.391 kb on - strand, within OLJFJH_16195at 3420.416 kb on - strand, within OLJFJH_16195at 3420.493 kb on - strand, within OLJFJH_16195at 3420.562 kb on + strand, within OLJFJH_16195at 3420.563 kb on - strand, within OLJFJH_16195at 3420.782 kb on - strand, within OLJFJH_16195at 3421.108 kb on + strand, within OLJFJH_16195at 3421.108 kb on + strand, within OLJFJH_16195at 3421.108 kb on + strand, within OLJFJH_16195at 3421.199 kb on + strandat 3421.388 kb on + strandat 3421.389 kb on - strandat 3421.521 kb on - strandat 3421.532 kb on + strand, within OLJFJH_16200at 3421.532 kb on + strand, within OLJFJH_16200at 3421.532 kb on + strand, within OLJFJH_16200at 3421.532 kb on + strand, within OLJFJH_16200at 3421.532 kb on + strand, within OLJFJH_16200at 3421.533 kb on - strand, within OLJFJH_16200at 3421.533 kb on - strand, within OLJFJH_16200at 3421.533 kb on - strand, within OLJFJH_16200at 3421.534 kb on + strand, within OLJFJH_16200at 3421.534 kb on + strand, within OLJFJH_16200at 3421.534 kb on + strand, within OLJFJH_16200at 3421.534 kb on + strand, within OLJFJH_16200at 3421.534 kb on + strand, within OLJFJH_16200at 3421.535 kb on - strand, within OLJFJH_16200at 3421.535 kb on - strand, within OLJFJH_16200at 3421.758 kb on - strand, within OLJFJH_16200at 3421.901 kb on + strand, within OLJFJH_16200at 3421.995 kb on + strand, within OLJFJH_16200at 3421.995 kb on + strand, within OLJFJH_16200at 3421.996 kb on - strand, within OLJFJH_16200at 3421.996 kb on - strand, within OLJFJH_16200at 3421.996 kb on - strand, within OLJFJH_16200at 3422.192 kb on + strand, within OLJFJH_16200at 3422.192 kb on + strand, within OLJFJH_16200at 3422.192 kb on + strand, within OLJFJH_16200at 3422.193 kb on - strand, within OLJFJH_16200at 3422.193 kb on - strand, within OLJFJH_16200at 3422.195 kb on - strand, within OLJFJH_16200at 3422.330 kb on - strand, within OLJFJH_16200at 3422.330 kb on - strand, within OLJFJH_16200

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
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3,418,704 + OLJFJH_16190 0.23 +1.6
3,418,711 - OLJFJH_16190 0.23 -0.6
3,418,792 + OLJFJH_16190 0.32 -1.1
3,418,792 + OLJFJH_16190 0.32 +0.3
3,418,793 - OLJFJH_16190 0.32 +0.5
3,418,793 - OLJFJH_16190 0.32 +0.9
3,418,793 - OLJFJH_16190 0.32 +0.2
3,418,867 - OLJFJH_16190 0.39 +0.3
3,418,881 - OLJFJH_16190 0.41 -0.3
3,418,881 - OLJFJH_16190 0.41 +2.9
3,418,881 - OLJFJH_16190 0.41 +1.7
3,419,266 + OLJFJH_16190 0.80 +1.2
3,419,267 - OLJFJH_16190 0.80 +0.1
3,419,268 + OLJFJH_16190 0.81 +0.2
3,419,268 + OLJFJH_16190 0.81 -1.5
3,419,268 + OLJFJH_16190 0.81 +2.9
3,419,269 - OLJFJH_16190 0.81 +1.8
3,419,301 + OLJFJH_16190 0.84 +1.0
3,419,325 - OLJFJH_16190 0.86 -1.2
3,419,357 - OLJFJH_16190 0.90 -0.5
3,419,461 - +0.4
3,419,469 + -0.8
3,419,470 - -0.3
3,419,520 - +1.0
3,419,520 - -0.1
3,419,837 - OLJFJH_16195 0.14 -2.0
3,419,872 + OLJFJH_16195 0.16 -1.1
3,419,998 - OLJFJH_16195 0.23 -1.0
3,419,998 - OLJFJH_16195 0.23 -0.3
3,420,000 + OLJFJH_16195 0.23 -0.9
3,420,095 - OLJFJH_16195 0.28 -1.0
3,420,235 + OLJFJH_16195 0.36 -1.8
3,420,235 + OLJFJH_16195 0.36 +1.2
3,420,236 - OLJFJH_16195 0.36 -0.4
3,420,391 - OLJFJH_16195 0.45 -2.3
3,420,391 - OLJFJH_16195 0.45 +0.4
3,420,416 - OLJFJH_16195 0.47 +0.3
3,420,493 - OLJFJH_16195 0.51 -0.3
3,420,562 + OLJFJH_16195 0.55 -1.3
3,420,563 - OLJFJH_16195 0.55 -1.3
3,420,782 - OLJFJH_16195 0.67 +0.4
3,421,108 + OLJFJH_16195 0.86 +0.2
3,421,108 + OLJFJH_16195 0.86 +0.5
3,421,108 + OLJFJH_16195 0.86 -1.9
3,421,199 + -1.0
3,421,388 + +0.2
3,421,389 - -1.0
3,421,521 - +1.3
3,421,532 + OLJFJH_16200 0.10 -0.0
3,421,532 + OLJFJH_16200 0.10 -1.0
3,421,532 + OLJFJH_16200 0.10 -2.4
3,421,532 + OLJFJH_16200 0.10 +0.2
3,421,532 + OLJFJH_16200 0.10 -1.3
3,421,533 - OLJFJH_16200 0.10 +0.5
3,421,533 - OLJFJH_16200 0.10 +1.4
3,421,533 - OLJFJH_16200 0.10 -0.0
3,421,534 + OLJFJH_16200 0.10 -0.1
3,421,534 + OLJFJH_16200 0.10 +0.3
3,421,534 + OLJFJH_16200 0.10 -3.1
3,421,534 + OLJFJH_16200 0.10 +0.0
3,421,534 + OLJFJH_16200 0.10 -0.6
3,421,535 - OLJFJH_16200 0.10 -1.7
3,421,535 - OLJFJH_16200 0.10 +1.4
3,421,758 - OLJFJH_16200 0.23 -0.6
3,421,901 + OLJFJH_16200 0.31 +0.0
3,421,995 + OLJFJH_16200 0.37 -1.2
3,421,995 + OLJFJH_16200 0.37 -1.8
3,421,996 - OLJFJH_16200 0.37 -0.4
3,421,996 - OLJFJH_16200 0.37 -0.3
3,421,996 - OLJFJH_16200 0.37 -1.2
3,422,192 + OLJFJH_16200 0.48 -1.1
3,422,192 + OLJFJH_16200 0.48 -0.2
3,422,192 + OLJFJH_16200 0.48 +0.1
3,422,193 - OLJFJH_16200 0.48 -1.3
3,422,193 - OLJFJH_16200 0.48 -1.4
3,422,195 - OLJFJH_16200 0.48 -1.8
3,422,330 - OLJFJH_16200 0.56 -0.4
3,422,330 - OLJFJH_16200 0.56 +0.3

Or see this region's nucleotide sequence