Strain Fitness in Erwinia amylovora T8 around OLJFJH_15620

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_15610 and OLJFJH_15615 are separated by 30 nucleotidesOLJFJH_15615 and OLJFJH_15620 are separated by 11 nucleotidesOLJFJH_15620 and OLJFJH_15625 are separated by 3 nucleotidesOLJFJH_15625 and OLJFJH_15630 are separated by 154 nucleotides OLJFJH_15610: OLJFJH_15610 - flagellar hook protein FlgE, at 3,292,993 to 3,294,201 _15610 OLJFJH_15615: OLJFJH_15615 - flagellar hook assembly protein FlgD, at 3,294,232 to 3,294,903 _15615 OLJFJH_15620: OLJFJH_15620 - flagellar basal body rod protein FlgC, at 3,294,915 to 3,295,319 _15620 OLJFJH_15625: OLJFJH_15625 - flagellar basal body rod protein FlgB, at 3,295,323 to 3,295,736 _15625 OLJFJH_15630: OLJFJH_15630 - flagellar basal body P-ring formation protein FlgA, at 3,295,891 to 3,296,559 _15630 Position (kb) 3294 3295 3296Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3293.922 kb on - strand, within OLJFJH_15610at 3293.922 kb on - strand, within OLJFJH_15610at 3294.204 kb on - strandat 3294.204 kb on - strandat 3294.314 kb on - strand, within OLJFJH_15615at 3294.392 kb on + strand, within OLJFJH_15615at 3294.393 kb on - strand, within OLJFJH_15615at 3294.393 kb on - strand, within OLJFJH_15615at 3294.393 kb on - strand, within OLJFJH_15615at 3294.393 kb on - strand, within OLJFJH_15615at 3294.397 kb on - strand, within OLJFJH_15615at 3294.397 kb on - strand, within OLJFJH_15615at 3294.397 kb on - strand, within OLJFJH_15615at 3294.447 kb on + strand, within OLJFJH_15615at 3294.447 kb on + strand, within OLJFJH_15615at 3294.447 kb on + strand, within OLJFJH_15615at 3294.447 kb on + strand, within OLJFJH_15615at 3294.448 kb on - strand, within OLJFJH_15615at 3294.448 kb on - strand, within OLJFJH_15615at 3294.448 kb on - strand, within OLJFJH_15615at 3294.451 kb on + strand, within OLJFJH_15615at 3294.451 kb on + strand, within OLJFJH_15615at 3294.452 kb on - strand, within OLJFJH_15615at 3294.550 kb on + strand, within OLJFJH_15615at 3294.808 kb on - strand, within OLJFJH_15615at 3294.884 kb on - strandat 3294.897 kb on + strandat 3294.897 kb on + strandat 3294.898 kb on - strandat 3295.051 kb on + strand, within OLJFJH_15620at 3295.195 kb on + strand, within OLJFJH_15620at 3295.195 kb on + strand, within OLJFJH_15620at 3295.196 kb on - strand, within OLJFJH_15620at 3295.196 kb on - strand, within OLJFJH_15620at 3295.196 kb on - strand, within OLJFJH_15620at 3295.311 kb on - strandat 3295.321 kb on - strandat 3295.324 kb on + strandat 3295.390 kb on + strand, within OLJFJH_15625at 3295.390 kb on + strand, within OLJFJH_15625at 3295.433 kb on + strand, within OLJFJH_15625at 3295.434 kb on - strand, within OLJFJH_15625at 3295.477 kb on + strand, within OLJFJH_15625at 3295.478 kb on - strand, within OLJFJH_15625at 3295.490 kb on + strand, within OLJFJH_15625at 3295.590 kb on + strand, within OLJFJH_15625at 3295.590 kb on + strand, within OLJFJH_15625at 3295.703 kb on + strandat 3295.773 kb on + strandat 3295.773 kb on + strandat 3295.774 kb on - strandat 3295.774 kb on - strandat 3295.804 kb on + strandat 3295.805 kb on - strandat 3295.811 kb on - strandat 3295.823 kb on + strandat 3295.823 kb on + strandat 3295.824 kb on - strandat 3295.856 kb on - strandat 3295.884 kb on - strandat 3295.897 kb on - strandat 3295.897 kb on - strandat 3295.897 kb on - strandat 3295.900 kb on + strandat 3295.900 kb on + strandat 3295.901 kb on - strandat 3296.040 kb on - strand, within OLJFJH_15630at 3296.116 kb on + strand, within OLJFJH_15630at 3296.116 kb on + strand, within OLJFJH_15630at 3296.117 kb on - strand, within OLJFJH_15630at 3296.117 kb on - strand, within OLJFJH_15630at 3296.117 kb on - strand, within OLJFJH_15630at 3296.117 kb on - strand, within OLJFJH_15630at 3296.117 kb on - strand, within OLJFJH_15630at 3296.117 kb on - strand, within OLJFJH_15630at 3296.188 kb on + strand, within OLJFJH_15630at 3296.189 kb on - strand, within OLJFJH_15630at 3296.291 kb on + strand, within OLJFJH_15630at 3296.295 kb on + strand, within OLJFJH_15630at 3296.295 kb on + strand, within OLJFJH_15630

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
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3,293,922 - OLJFJH_15610 0.77 -0.6
3,293,922 - OLJFJH_15610 0.77 +3.5
3,294,204 - -2.3
3,294,204 - +0.7
3,294,314 - OLJFJH_15615 0.12 -1.7
3,294,392 + OLJFJH_15615 0.24 -0.1
3,294,393 - OLJFJH_15615 0.24 -0.0
3,294,393 - OLJFJH_15615 0.24 +0.7
3,294,393 - OLJFJH_15615 0.24 -1.5
3,294,393 - OLJFJH_15615 0.24 -2.2
3,294,397 - OLJFJH_15615 0.25 -2.6
3,294,397 - OLJFJH_15615 0.25 +0.5
3,294,397 - OLJFJH_15615 0.25 -1.1
3,294,447 + OLJFJH_15615 0.32 -0.0
3,294,447 + OLJFJH_15615 0.32 +0.3
3,294,447 + OLJFJH_15615 0.32 +0.5
3,294,447 + OLJFJH_15615 0.32 -2.3
3,294,448 - OLJFJH_15615 0.32 -1.0
3,294,448 - OLJFJH_15615 0.32 -0.5
3,294,448 - OLJFJH_15615 0.32 -0.6
3,294,451 + OLJFJH_15615 0.33 -2.0
3,294,451 + OLJFJH_15615 0.33 +0.6
3,294,452 - OLJFJH_15615 0.33 -1.4
3,294,550 + OLJFJH_15615 0.47 -2.3
3,294,808 - OLJFJH_15615 0.86 -0.5
3,294,884 - -1.9
3,294,897 + -1.6
3,294,897 + -0.3
3,294,898 - -0.9
3,295,051 + OLJFJH_15620 0.34 -0.3
3,295,195 + OLJFJH_15620 0.69 +1.5
3,295,195 + OLJFJH_15620 0.69 -1.7
3,295,196 - OLJFJH_15620 0.69 -1.9
3,295,196 - OLJFJH_15620 0.69 -1.5
3,295,196 - OLJFJH_15620 0.69 -0.5
3,295,311 - +0.7
3,295,321 - -0.2
3,295,324 + +0.1
3,295,390 + OLJFJH_15625 0.16 +0.2
3,295,390 + OLJFJH_15625 0.16 +0.1
3,295,433 + OLJFJH_15625 0.27 -0.3
3,295,434 - OLJFJH_15625 0.27 -1.2
3,295,477 + OLJFJH_15625 0.37 -0.5
3,295,478 - OLJFJH_15625 0.37 -1.0
3,295,490 + OLJFJH_15625 0.40 +2.8
3,295,590 + OLJFJH_15625 0.64 -0.4
3,295,590 + OLJFJH_15625 0.64 -1.1
3,295,703 + +0.1
3,295,773 + -0.5
3,295,773 + -0.2
3,295,774 - -3.0
3,295,774 - -0.6
3,295,804 + +0.7
3,295,805 - -0.6
3,295,811 - -0.5
3,295,823 + -0.8
3,295,823 + +0.5
3,295,824 - -1.1
3,295,856 - +0.3
3,295,884 - +1.6
3,295,897 - +1.4
3,295,897 - +2.6
3,295,897 - -1.3
3,295,900 + -0.8
3,295,900 + -0.3
3,295,901 - +0.6
3,296,040 - OLJFJH_15630 0.22 -2.3
3,296,116 + OLJFJH_15630 0.34 -0.3
3,296,116 + OLJFJH_15630 0.34 -1.6
3,296,117 - OLJFJH_15630 0.34 -2.1
3,296,117 - OLJFJH_15630 0.34 -0.2
3,296,117 - OLJFJH_15630 0.34 +1.9
3,296,117 - OLJFJH_15630 0.34 -1.5
3,296,117 - OLJFJH_15630 0.34 +0.1
3,296,117 - OLJFJH_15630 0.34 +4.0
3,296,188 + OLJFJH_15630 0.44 -0.1
3,296,189 - OLJFJH_15630 0.45 +0.7
3,296,291 + OLJFJH_15630 0.60 -0.6
3,296,295 + OLJFJH_15630 0.60 +0.7
3,296,295 + OLJFJH_15630 0.60 +1.3

Or see this region's nucleotide sequence