Strain Fitness in Erwinia amylovora T8 around OLJFJH_11235

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_11230 and OLJFJH_11235 are separated by 111 nucleotidesOLJFJH_11235 and OLJFJH_11240 overlap by 1 nucleotidesOLJFJH_11240 and OLJFJH_11245 are separated by 30 nucleotides OLJFJH_11230: OLJFJH_11230 - 4-phosphoerythronate dehydrogenase PdxB, at 2,335,870 to 2,337,003 _11230 OLJFJH_11235: OLJFJH_11235 - aspartate-semialdehyde dehydrogenase, at 2,337,115 to 2,338,125 _11235 OLJFJH_11240: OLJFJH_11240 - tRNA pseudouridine(38-40) synthase TruA, at 2,338,125 to 2,338,940 _11240 OLJFJH_11245: OLJFJH_11245 - DedA family protein, at 2,338,971 to 2,339,630 _11245 Position (kb) 2337 2338 2339Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2336.161 kb on + strand, within OLJFJH_11230at 2336.161 kb on + strand, within OLJFJH_11230at 2336.162 kb on - strand, within OLJFJH_11230at 2336.229 kb on + strand, within OLJFJH_11230at 2336.431 kb on - strand, within OLJFJH_11230at 2336.720 kb on + strand, within OLJFJH_11230at 2336.818 kb on + strand, within OLJFJH_11230at 2336.818 kb on + strand, within OLJFJH_11230at 2336.818 kb on + strand, within OLJFJH_11230at 2336.819 kb on - strand, within OLJFJH_11230at 2337.107 kb on - strandat 2337.143 kb on + strandat 2337.162 kb on - strandat 2337.858 kb on + strand, within OLJFJH_11235at 2337.859 kb on - strand, within OLJFJH_11235at 2337.942 kb on + strand, within OLJFJH_11235at 2338.114 kb on + strandat 2338.120 kb on + strandat 2338.121 kb on - strandat 2338.381 kb on + strand, within OLJFJH_11240at 2338.382 kb on - strand, within OLJFJH_11240at 2338.382 kb on - strand, within OLJFJH_11240at 2338.485 kb on + strand, within OLJFJH_11240at 2338.485 kb on + strand, within OLJFJH_11240at 2338.490 kb on + strand, within OLJFJH_11240at 2338.491 kb on - strand, within OLJFJH_11240at 2338.494 kb on + strand, within OLJFJH_11240at 2338.495 kb on - strand, within OLJFJH_11240at 2338.611 kb on - strand, within OLJFJH_11240at 2338.692 kb on + strand, within OLJFJH_11240at 2338.692 kb on + strand, within OLJFJH_11240at 2338.693 kb on - strand, within OLJFJH_11240at 2338.693 kb on - strand, within OLJFJH_11240at 2338.733 kb on + strand, within OLJFJH_11240at 2338.733 kb on + strand, within OLJFJH_11240at 2338.733 kb on + strand, within OLJFJH_11240at 2338.733 kb on + strand, within OLJFJH_11240at 2338.734 kb on - strand, within OLJFJH_11240at 2338.734 kb on - strand, within OLJFJH_11240at 2338.745 kb on + strand, within OLJFJH_11240at 2338.746 kb on - strand, within OLJFJH_11240at 2338.863 kb on + strandat 2338.864 kb on - strandat 2338.893 kb on + strandat 2338.894 kb on - strandat 2338.900 kb on + strandat 2338.938 kb on + strandat 2338.938 kb on + strandat 2338.942 kb on - strandat 2338.942 kb on - strandat 2338.942 kb on - strandat 2338.955 kb on - strandat 2339.000 kb on + strandat 2339.000 kb on + strandat 2339.058 kb on + strand, within OLJFJH_11245at 2339.059 kb on - strand, within OLJFJH_11245at 2339.059 kb on - strand, within OLJFJH_11245at 2339.059 kb on - strand, within OLJFJH_11245

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
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2,336,161 + OLJFJH_11230 0.26 +2.7
2,336,161 + OLJFJH_11230 0.26 +0.8
2,336,162 - OLJFJH_11230 0.26 +0.8
2,336,229 + OLJFJH_11230 0.32 +1.2
2,336,431 - OLJFJH_11230 0.49 +0.5
2,336,720 + OLJFJH_11230 0.75 +2.7
2,336,818 + OLJFJH_11230 0.84 +0.4
2,336,818 + OLJFJH_11230 0.84 -0.6
2,336,818 + OLJFJH_11230 0.84 +3.7
2,336,819 - OLJFJH_11230 0.84 -0.6
2,337,107 - +0.0
2,337,143 + -2.2
2,337,162 - -1.1
2,337,858 + OLJFJH_11235 0.73 -1.5
2,337,859 - OLJFJH_11235 0.74 -0.3
2,337,942 + OLJFJH_11235 0.82 -0.7
2,338,114 + +0.7
2,338,120 + +2.0
2,338,121 - +0.4
2,338,381 + OLJFJH_11240 0.31 -0.5
2,338,382 - OLJFJH_11240 0.31 -0.5
2,338,382 - OLJFJH_11240 0.31 -2.1
2,338,485 + OLJFJH_11240 0.44 -2.2
2,338,485 + OLJFJH_11240 0.44 +0.0
2,338,490 + OLJFJH_11240 0.45 -0.5
2,338,491 - OLJFJH_11240 0.45 +0.2
2,338,494 + OLJFJH_11240 0.45 +0.2
2,338,495 - OLJFJH_11240 0.45 -0.2
2,338,611 - OLJFJH_11240 0.60 -1.6
2,338,692 + OLJFJH_11240 0.69 -0.5
2,338,692 + OLJFJH_11240 0.69 -0.3
2,338,693 - OLJFJH_11240 0.70 -0.9
2,338,693 - OLJFJH_11240 0.70 -0.2
2,338,733 + OLJFJH_11240 0.75 +0.0
2,338,733 + OLJFJH_11240 0.75 -2.2
2,338,733 + OLJFJH_11240 0.75 -0.2
2,338,733 + OLJFJH_11240 0.75 +0.3
2,338,734 - OLJFJH_11240 0.75 +0.2
2,338,734 - OLJFJH_11240 0.75 -0.7
2,338,745 + OLJFJH_11240 0.76 +1.2
2,338,746 - OLJFJH_11240 0.76 -0.5
2,338,863 + -1.7
2,338,864 - +0.4
2,338,893 + -1.2
2,338,894 - -1.4
2,338,900 + +0.5
2,338,938 + -0.5
2,338,938 + -0.8
2,338,942 - +0.1
2,338,942 - +0.5
2,338,942 - +0.7
2,338,955 - -0.9
2,339,000 + -0.5
2,339,000 + +0.4
2,339,058 + OLJFJH_11245 0.13 -1.0
2,339,059 - OLJFJH_11245 0.13 -0.8
2,339,059 - OLJFJH_11245 0.13 -3.2
2,339,059 - OLJFJH_11245 0.13 +0.7

Or see this region's nucleotide sequence