Strain Fitness in Erwinia amylovora T8 around OLJFJH_10720

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_10710 and OLJFJH_10715 are separated by 14 nucleotidesOLJFJH_10715 and OLJFJH_10720 are separated by 366 nucleotidesOLJFJH_10720 and OLJFJH_10725 are separated by 10 nucleotides OLJFJH_10710: OLJFJH_10710 - Non-ribosomal peptide synthetase, at 2,217,978 to 2,239,055 _10710 OLJFJH_10715: OLJFJH_10715 - hypothetical protein, at 2,239,070 to 2,239,270 _10715 OLJFJH_10720: OLJFJH_10720 - Uncharacterised protein family (UPF0370), at 2,239,637 to 2,239,825 _10720 OLJFJH_10725: OLJFJH_10725 - succinyl-diaminopimelate desuccinylase, at 2,239,836 to 2,240,963 _10725 Position (kb) 2239 2240Strain fitness (log2 ratio) -2 -1 0 1at 2238.807 kb on + strandat 2238.807 kb on + strandat 2238.960 kb on + strandat 2238.960 kb on + strandat 2238.960 kb on + strandat 2238.961 kb on - strandat 2239.010 kb on + strandat 2239.075 kb on + strandat 2239.075 kb on + strandat 2239.076 kb on - strandat 2239.217 kb on - strand, within OLJFJH_10715at 2239.342 kb on + strandat 2239.342 kb on + strandat 2239.343 kb on - strandat 2239.343 kb on - strandat 2239.343 kb on - strandat 2239.343 kb on - strandat 2239.343 kb on - strandat 2239.533 kb on - strandat 2239.533 kb on - strandat 2239.723 kb on - strand, within OLJFJH_10720at 2239.806 kb on + strand, within OLJFJH_10720at 2239.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
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2,238,807 + -0.1
2,238,807 + -0.1
2,238,960 + +0.4
2,238,960 + +0.7
2,238,960 + -0.3
2,238,961 - -0.4
2,239,010 + -0.1
2,239,075 + +1.6
2,239,075 + +1.3
2,239,076 - -0.1
2,239,217 - OLJFJH_10715 0.73 +1.1
2,239,342 + -0.5
2,239,342 + -2.0
2,239,343 - +0.6
2,239,343 - +0.4
2,239,343 - +0.0
2,239,343 - -0.3
2,239,343 - -0.9
2,239,533 - -0.2
2,239,533 - -2.2
2,239,723 - OLJFJH_10720 0.46 -1.3
2,239,806 + OLJFJH_10720 0.89 -0.3
2,239,807 - +0.5

Or see this region's nucleotide sequence