Strain Fitness in Erwinia amylovora T8 around OLJFJH_08810

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08805 and OLJFJH_08810 are separated by 225 nucleotidesOLJFJH_08810 and OLJFJH_08815 are separated by 55 nucleotidesOLJFJH_08815 and OLJFJH_08820 are separated by 117 nucleotides OLJFJH_08805: OLJFJH_08805 - tRNA-modifying protein YgfZ, at 1,803,860 to 1,804,846 _08805 OLJFJH_08810: OLJFJH_08810 - FAD assembly factor SdhE, at 1,805,072 to 1,805,338 _08810 OLJFJH_08815: OLJFJH_08815 - Membrane-bound toxin component of toxin-antitoxin system, at 1,805,394 to 1,805,738 _08815 OLJFJH_08820: OLJFJH_08820 - flavodoxin FldB, at 1,805,856 to 1,806,374 _08820 Position (kb) 1805 1806Strain fitness (log2 ratio) -3 -2 -1 0 1at 1804.872 kb on - strandat 1805.037 kb on + strandat 1805.037 kb on + strandat 1805.038 kb on - strandat 1805.080 kb on + strandat 1805.080 kb on + strandat 1805.081 kb on - strandat 1805.086 kb on + strandat 1805.160 kb on - strand, within OLJFJH_08810at 1805.311 kb on + strand, within OLJFJH_08810at 1805.311 kb on + strand, within OLJFJH_08810at 1805.408 kb on - strandat 1805.480 kb on - strand, within OLJFJH_08815at 1805.542 kb on + strand, within OLJFJH_08815at 1805.571 kb on - strand, within OLJFJH_08815at 1805.571 kb on - strand, within OLJFJH_08815at 1805.571 kb on - strand, within OLJFJH_08815at 1805.675 kb on + strand, within OLJFJH_08815at 1805.711 kb on + strandat 1805.711 kb on + strandat 1805.712 kb on - strandat 1805.712 kb on - strandat 1805.712 kb on - strandat 1805.717 kb on - strandat 1805.779 kb on + strandat 1805.798 kb on + strandat 1805.933 kb on + strand, within OLJFJH_08820at 1805.936 kb on + strand, within OLJFJH_08820at 1805.936 kb on + strand, within OLJFJH_08820at 1805.936 kb on + strand, within OLJFJH_08820at 1805.937 kb on - strand, within OLJFJH_08820at 1806.097 kb on + strand, within OLJFJH_08820at 1806.239 kb on - strand, within OLJFJH_08820

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
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1,804,872 - -1.3
1,805,037 + -1.3
1,805,037 + -2.1
1,805,038 - +0.3
1,805,080 + -1.0
1,805,080 + -1.7
1,805,081 - -0.2
1,805,086 + +0.5
1,805,160 - OLJFJH_08810 0.33 -2.9
1,805,311 + OLJFJH_08810 0.90 -2.3
1,805,311 + OLJFJH_08810 0.90 -2.5
1,805,408 - -2.5
1,805,480 - OLJFJH_08815 0.25 +0.5
1,805,542 + OLJFJH_08815 0.43 +0.6
1,805,571 - OLJFJH_08815 0.51 +0.3
1,805,571 - OLJFJH_08815 0.51 -0.6
1,805,571 - OLJFJH_08815 0.51 -0.0
1,805,675 + OLJFJH_08815 0.81 -2.2
1,805,711 + -0.3
1,805,711 + +0.0
1,805,712 - -0.4
1,805,712 - +1.3
1,805,712 - +0.2
1,805,717 - -0.8
1,805,779 + -0.4
1,805,798 + -0.7
1,805,933 + OLJFJH_08820 0.15 +0.6
1,805,936 + OLJFJH_08820 0.15 -1.7
1,805,936 + OLJFJH_08820 0.15 -0.3
1,805,936 + OLJFJH_08820 0.15 +0.6
1,805,937 - OLJFJH_08820 0.16 -0.7
1,806,097 + OLJFJH_08820 0.46 -1.0
1,806,239 - OLJFJH_08820 0.74 -0.2

Or see this region's nucleotide sequence