Strain Fitness in Erwinia amylovora T8 around OLJFJH_08610

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08600 and OLJFJH_08605 are separated by 66 nucleotidesOLJFJH_08605 and OLJFJH_08610 are separated by 121 nucleotidesOLJFJH_08610 and OLJFJH_08615 are separated by 280 nucleotidesOLJFJH_08615 and OLJFJH_08620 overlap by 4 nucleotides OLJFJH_08600: OLJFJH_08600 - biosynthetic arginine decarboxylase, at 1,762,902 to 1,764,878 _08600 OLJFJH_08605: OLJFJH_08605 - YidB-like protein, at 1,764,945 to 1,765,406 _08605 OLJFJH_08610: OLJFJH_08610 - agmatinase, at 1,765,528 to 1,766,451 _08610 OLJFJH_08615: OLJFJH_08615 - putative double-glycine leader peptidase C39-like (CLD) domain, at 1,766,732 to 1,767,100 _08615 OLJFJH_08620: OLJFJH_08620 - hypothetical protein, at 1,767,097 to 1,767,417 _08620 Position (kb) 1765 1766 1767Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1764.555 kb on + strand, within OLJFJH_08600at 1764.555 kb on + strand, within OLJFJH_08600at 1764.555 kb on + strand, within OLJFJH_08600at 1764.556 kb on - strand, within OLJFJH_08600at 1764.556 kb on - strand, within OLJFJH_08600at 1764.590 kb on + strand, within OLJFJH_08600at 1764.590 kb on + strand, within OLJFJH_08600at 1764.591 kb on - strand, within OLJFJH_08600at 1764.591 kb on - strand, within OLJFJH_08600at 1764.661 kb on + strand, within OLJFJH_08600at 1764.661 kb on + strand, within OLJFJH_08600at 1764.661 kb on + strand, within OLJFJH_08600at 1764.661 kb on + strand, within OLJFJH_08600at 1764.661 kb on + strand, within OLJFJH_08600at 1764.662 kb on - strand, within OLJFJH_08600at 1764.662 kb on - strand, within OLJFJH_08600at 1764.662 kb on - strand, within OLJFJH_08600at 1764.662 kb on - strand, within OLJFJH_08600at 1764.662 kb on - strand, within OLJFJH_08600at 1764.662 kb on - strand, within OLJFJH_08600at 1764.735 kb on + strandat 1764.735 kb on + strandat 1764.736 kb on - strandat 1764.736 kb on - strandat 1764.746 kb on + strandat 1764.746 kb on + strandat 1764.747 kb on - strandat 1764.850 kb on - strandat 1764.855 kb on + strandat 1764.857 kb on + strandat 1764.857 kb on + strandat 1764.857 kb on + strandat 1764.858 kb on - strandat 1764.858 kb on - strandat 1764.858 kb on - strandat 1764.858 kb on - strandat 1764.858 kb on - strandat 1764.858 kb on - strandat 1764.858 kb on - strandat 1764.858 kb on - strandat 1764.861 kb on + strandat 1764.861 kb on + strandat 1764.862 kb on - strandat 1764.862 kb on - strandat 1764.932 kb on - strandat 1764.942 kb on + strandat 1764.942 kb on + strandat 1764.943 kb on - strandat 1764.943 kb on - strandat 1764.943 kb on - strandat 1764.943 kb on - strandat 1764.943 kb on - strandat 1764.968 kb on + strandat 1764.968 kb on + strandat 1764.969 kb on - strandat 1764.969 kb on - strandat 1764.971 kb on + strandat 1764.992 kb on + strand, within OLJFJH_08605at 1765.370 kb on - strandat 1765.397 kb on + strandat 1765.398 kb on - strandat 1765.404 kb on + strandat 1765.424 kb on - strandat 1765.524 kb on + strandat 1765.541 kb on + strandat 1765.552 kb on + strandat 1765.587 kb on + strandat 1765.587 kb on + strandat 1765.705 kb on - strand, within OLJFJH_08610at 1765.808 kb on - strand, within OLJFJH_08610at 1765.909 kb on + strand, within OLJFJH_08610at 1765.909 kb on + strand, within OLJFJH_08610at 1765.909 kb on + strand, within OLJFJH_08610at 1765.910 kb on - strand, within OLJFJH_08610at 1765.953 kb on + strand, within OLJFJH_08610at 1765.983 kb on + strand, within OLJFJH_08610at 1765.989 kb on + strand, within OLJFJH_08610at 1766.032 kb on + strand, within OLJFJH_08610at 1766.206 kb on + strand, within OLJFJH_08610at 1766.415 kb on + strandat 1766.422 kb on + strandat 1766.423 kb on - strandat 1766.423 kb on - strandat 1766.516 kb on - strandat 1766.977 kb on + strand, within OLJFJH_08615at 1767.074 kb on + strandat 1767.397 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
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1,764,555 + OLJFJH_08600 0.84 -3.3
1,764,555 + OLJFJH_08600 0.84 -1.9
1,764,555 + OLJFJH_08600 0.84 -0.4
1,764,556 - OLJFJH_08600 0.84 +0.6
1,764,556 - OLJFJH_08600 0.84 -0.6
1,764,590 + OLJFJH_08600 0.85 +0.0
1,764,590 + OLJFJH_08600 0.85 -1.5
1,764,591 - OLJFJH_08600 0.85 +2.0
1,764,591 - OLJFJH_08600 0.85 +3.7
1,764,661 + OLJFJH_08600 0.89 +0.8
1,764,661 + OLJFJH_08600 0.89 -1.3
1,764,661 + OLJFJH_08600 0.89 +0.4
1,764,661 + OLJFJH_08600 0.89 -2.0
1,764,661 + OLJFJH_08600 0.89 -1.3
1,764,662 - OLJFJH_08600 0.89 -0.8
1,764,662 - OLJFJH_08600 0.89 -2.1
1,764,662 - OLJFJH_08600 0.89 +0.0
1,764,662 - OLJFJH_08600 0.89 +0.3
1,764,662 - OLJFJH_08600 0.89 +0.1
1,764,662 - OLJFJH_08600 0.89 -0.2
1,764,735 + -1.5
1,764,735 + +0.5
1,764,736 - -0.6
1,764,736 - -0.3
1,764,746 + -0.0
1,764,746 + -1.0
1,764,747 - -0.1
1,764,850 - -2.2
1,764,855 + -0.1
1,764,857 + -0.1
1,764,857 + -0.5
1,764,857 + +3.2
1,764,858 - -1.8
1,764,858 - +0.4
1,764,858 - -1.3
1,764,858 - +1.4
1,764,858 - +0.8
1,764,858 - +0.3
1,764,858 - +0.2
1,764,858 - -2.7
1,764,861 + -0.2
1,764,861 + -1.8
1,764,862 - +0.1
1,764,862 - -1.5
1,764,932 - -0.4
1,764,942 + +0.6
1,764,942 + +0.3
1,764,943 - -0.4
1,764,943 - -0.1
1,764,943 - -0.5
1,764,943 - +1.2
1,764,943 - -1.7
1,764,968 + +1.8
1,764,968 + -0.1
1,764,969 - -0.3
1,764,969 - -1.7
1,764,971 + -0.2
1,764,992 + OLJFJH_08605 0.10 -0.8
1,765,370 - -1.2
1,765,397 + +0.0
1,765,398 - -0.7
1,765,404 + -0.8
1,765,424 - -1.5
1,765,524 + -0.5
1,765,541 + -0.9
1,765,552 + -2.0
1,765,587 + -1.8
1,765,587 + +0.0
1,765,705 - OLJFJH_08610 0.19 +1.2
1,765,808 - OLJFJH_08610 0.30 -1.0
1,765,909 + OLJFJH_08610 0.41 -1.8
1,765,909 + OLJFJH_08610 0.41 -1.4
1,765,909 + OLJFJH_08610 0.41 +0.3
1,765,910 - OLJFJH_08610 0.41 -4.2
1,765,953 + OLJFJH_08610 0.46 -0.6
1,765,983 + OLJFJH_08610 0.49 -0.9
1,765,989 + OLJFJH_08610 0.50 -1.4
1,766,032 + OLJFJH_08610 0.55 -2.6
1,766,206 + OLJFJH_08610 0.73 -0.8
1,766,415 + -1.1
1,766,422 + -1.5
1,766,423 - -1.3
1,766,423 - -1.7
1,766,516 - -0.3
1,766,977 + OLJFJH_08615 0.66 +0.9
1,767,074 + -0.5
1,767,397 + -0.8

Or see this region's nucleotide sequence