Strain Fitness in Erwinia amylovora T8 around OLJFJH_07460

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_07450 and OLJFJH_07455 are separated by 4 nucleotidesOLJFJH_07455 and OLJFJH_07460 overlap by 1 nucleotidesOLJFJH_07460 and OLJFJH_07465 overlap by 11 nucleotides OLJFJH_07450: OLJFJH_07450 - hypothetical protein, at 1,525,521 to 1,526,351 _07450 OLJFJH_07455: OLJFJH_07455 - DNA sulfur modification protein DndE, at 1,526,356 to 1,526,709 _07455 OLJFJH_07460: OLJFJH_07460 - DNA sulfur modification protein DndD, at 1,526,709 to 1,528,709 _07460 OLJFJH_07465: OLJFJH_07465 - DNA phosphorothioation system sulfurtransferase DndC, at 1,528,699 to 1,530,333 _07465 Position (kb) 1526 1527 1528 1529Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1525.749 kb on - strand, within OLJFJH_07450at 1525.782 kb on - strand, within OLJFJH_07450at 1525.801 kb on - strand, within OLJFJH_07450at 1526.012 kb on - strand, within OLJFJH_07450at 1526.358 kb on - strandat 1526.358 kb on - strandat 1526.768 kb on + strandat 1526.768 kb on + strandat 1526.769 kb on - strandat 1526.893 kb on + strandat 1526.909 kb on + strand, within OLJFJH_07460at 1526.909 kb on + strand, within OLJFJH_07460at 1526.955 kb on - strand, within OLJFJH_07460at 1526.997 kb on + strand, within OLJFJH_07460at 1527.010 kb on + strand, within OLJFJH_07460at 1527.256 kb on + strand, within OLJFJH_07460at 1527.411 kb on + strand, within OLJFJH_07460at 1527.775 kb on - strand, within OLJFJH_07460at 1527.792 kb on - strand, within OLJFJH_07460at 1527.838 kb on - strand, within OLJFJH_07460at 1528.136 kb on + strand, within OLJFJH_07460at 1528.136 kb on + strand, within OLJFJH_07460at 1528.137 kb on - strand, within OLJFJH_07460at 1528.155 kb on + strand, within OLJFJH_07460at 1528.392 kb on - strand, within OLJFJH_07460at 1528.409 kb on + strand, within OLJFJH_07460at 1528.491 kb on - strand, within OLJFJH_07460at 1528.493 kb on - strand, within OLJFJH_07460at 1528.534 kb on + strandat 1528.584 kb on + strandat 1528.913 kb on - strand, within OLJFJH_07465at 1528.931 kb on - strand, within OLJFJH_07465at 1528.981 kb on + strand, within OLJFJH_07465at 1529.079 kb on - strand, within OLJFJH_07465at 1529.091 kb on - strand, within OLJFJH_07465at 1529.094 kb on + strand, within OLJFJH_07465at 1529.094 kb on + strand, within OLJFJH_07465at 1529.095 kb on - strand, within OLJFJH_07465at 1529.185 kb on - strand, within OLJFJH_07465at 1529.283 kb on + strand, within OLJFJH_07465at 1529.284 kb on - strand, within OLJFJH_07465at 1529.318 kb on + strand, within OLJFJH_07465at 1529.318 kb on + strand, within OLJFJH_07465at 1529.319 kb on - strand, within OLJFJH_07465at 1529.325 kb on - strand, within OLJFJH_07465at 1529.388 kb on + strand, within OLJFJH_07465at 1529.527 kb on - strand, within OLJFJH_07465at 1529.576 kb on + strand, within OLJFJH_07465at 1529.576 kb on + strand, within OLJFJH_07465at 1529.576 kb on + strand, within OLJFJH_07465at 1529.576 kb on + strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.577 kb on - strand, within OLJFJH_07465at 1529.632 kb on - strand, within OLJFJH_07465at 1529.666 kb on - strand, within OLJFJH_07465at 1529.708 kb on + strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465at 1529.709 kb on - strand, within OLJFJH_07465

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
remove
1,525,749 - OLJFJH_07450 0.27 -0.9
1,525,782 - OLJFJH_07450 0.31 +1.1
1,525,801 - OLJFJH_07450 0.34 -0.3
1,526,012 - OLJFJH_07450 0.59 -0.1
1,526,358 - -1.2
1,526,358 - +0.3
1,526,768 + -2.3
1,526,768 + -2.4
1,526,769 - -5.1
1,526,893 + -2.0
1,526,909 + OLJFJH_07460 0.10 -1.4
1,526,909 + OLJFJH_07460 0.10 -1.8
1,526,955 - OLJFJH_07460 0.12 -3.1
1,526,997 + OLJFJH_07460 0.14 +0.2
1,527,010 + OLJFJH_07460 0.15 +0.2
1,527,256 + OLJFJH_07460 0.27 +0.0
1,527,411 + OLJFJH_07460 0.35 -0.8
1,527,775 - OLJFJH_07460 0.53 -4.3
1,527,792 - OLJFJH_07460 0.54 -0.2
1,527,838 - OLJFJH_07460 0.56 -5.3
1,528,136 + OLJFJH_07460 0.71 -2.1
1,528,136 + OLJFJH_07460 0.71 -4.1
1,528,137 - OLJFJH_07460 0.71 -3.0
1,528,155 + OLJFJH_07460 0.72 -3.0
1,528,392 - OLJFJH_07460 0.84 -2.8
1,528,409 + OLJFJH_07460 0.85 -2.4
1,528,491 - OLJFJH_07460 0.89 -4.8
1,528,493 - OLJFJH_07460 0.89 -4.3
1,528,534 + +0.0
1,528,584 + -4.3
1,528,913 - OLJFJH_07465 0.13 -4.7
1,528,931 - OLJFJH_07465 0.14 -0.2
1,528,981 + OLJFJH_07465 0.17 -2.2
1,529,079 - OLJFJH_07465 0.23 -3.4
1,529,091 - OLJFJH_07465 0.24 -3.3
1,529,094 + OLJFJH_07465 0.24 -3.8
1,529,094 + OLJFJH_07465 0.24 -1.6
1,529,095 - OLJFJH_07465 0.24 -3.7
1,529,185 - OLJFJH_07465 0.30 -2.0
1,529,283 + OLJFJH_07465 0.36 -4.2
1,529,284 - OLJFJH_07465 0.36 -1.4
1,529,318 + OLJFJH_07465 0.38 +0.2
1,529,318 + OLJFJH_07465 0.38 -2.3
1,529,319 - OLJFJH_07465 0.38 -1.7
1,529,325 - OLJFJH_07465 0.38 -5.2
1,529,388 + OLJFJH_07465 0.42 -2.8
1,529,527 - OLJFJH_07465 0.51 -1.9
1,529,576 + OLJFJH_07465 0.54 -4.3
1,529,576 + OLJFJH_07465 0.54 -4.4
1,529,576 + OLJFJH_07465 0.54 -3.6
1,529,576 + OLJFJH_07465 0.54 -2.1
1,529,577 - OLJFJH_07465 0.54 -3.8
1,529,577 - OLJFJH_07465 0.54 -5.1
1,529,577 - OLJFJH_07465 0.54 -2.9
1,529,577 - OLJFJH_07465 0.54 -5.7
1,529,577 - OLJFJH_07465 0.54 -3.8
1,529,632 - OLJFJH_07465 0.57 -5.2
1,529,666 - OLJFJH_07465 0.59 -3.6
1,529,708 + OLJFJH_07465 0.62 -1.9
1,529,709 - OLJFJH_07465 0.62 -3.3
1,529,709 - OLJFJH_07465 0.62 -2.5
1,529,709 - OLJFJH_07465 0.62 -4.7
1,529,709 - OLJFJH_07465 0.62 -5.0
1,529,709 - OLJFJH_07465 0.62 -4.9

Or see this region's nucleotide sequence