Strain Fitness in Erwinia amylovora T8 around OLJFJH_07090

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07080 and OLJFJH_07085 overlap by 23 nucleotidesOLJFJH_07085 and OLJFJH_07090 overlap by 4 nucleotidesOLJFJH_07090 and OLJFJH_07095 are separated by 18 nucleotides OLJFJH_07080: OLJFJH_07080 - lipopolysaccharide ABC transporter substrate-binding protein LptA, at 1,446,487 to 1,447,038 _07080 OLJFJH_07085: OLJFJH_07085 - LPS export ABC transporter periplasmic protein LptC, at 1,447,016 to 1,447,585 _07085 OLJFJH_07090: OLJFJH_07090 - 3-deoxy-manno-octulosonate-8-phosphatase KdsC, at 1,447,582 to 1,448,148 _07090 OLJFJH_07095: OLJFJH_07095 - arabinose-5-phosphate isomerase KdsD, at 1,448,167 to 1,449,156 _07095 Position (kb) 1447 1448 1449Strain fitness (log2 ratio) -3 -2 -1 0 1at 1447.628 kb on - strandat 1447.643 kb on - strand, within OLJFJH_07090at 1447.785 kb on - strand, within OLJFJH_07090at 1447.816 kb on - strand, within OLJFJH_07090at 1447.873 kb on - strand, within OLJFJH_07090at 1447.876 kb on - strand, within OLJFJH_07090at 1447.926 kb on + strand, within OLJFJH_07090at 1447.926 kb on + strand, within OLJFJH_07090at 1447.933 kb on + strand, within OLJFJH_07090at 1447.933 kb on + strand, within OLJFJH_07090at 1447.933 kb on + strand, within OLJFJH_07090at 1447.934 kb on - strand, within OLJFJH_07090at 1447.934 kb on - strand, within OLJFJH_07090at 1447.934 kb on - strand, within OLJFJH_07090at 1448.150 kb on - strandat 1448.168 kb on + strandat 1448.250 kb on + strandat 1448.250 kb on + strandat 1448.292 kb on + strand, within OLJFJH_07095at 1448.352 kb on + strand, within OLJFJH_07095at 1448.713 kb on - strand, within OLJFJH_07095at 1448.773 kb on + strand, within OLJFJH_07095at 1448.773 kb on + strand, within OLJFJH_07095at 1448.773 kb on + strand, within OLJFJH_07095at 1448.773 kb on + strand, within OLJFJH_07095at 1448.776 kb on + strand, within OLJFJH_07095at 1448.776 kb on + strand, within OLJFJH_07095at 1448.776 kb on + strand, within OLJFJH_07095at 1448.776 kb on + strand, within OLJFJH_07095at 1448.777 kb on - strand, within OLJFJH_07095at 1448.841 kb on + strand, within OLJFJH_07095at 1448.911 kb on + strand, within OLJFJH_07095at 1448.998 kb on + strand, within OLJFJH_07095at 1448.998 kb on + strand, within OLJFJH_07095at 1448.998 kb on + strand, within OLJFJH_07095at 1448.999 kb on - strand, within OLJFJH_07095at 1448.999 kb on - strand, within OLJFJH_07095

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
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1,447,628 - -0.1
1,447,643 - OLJFJH_07090 0.11 -1.5
1,447,785 - OLJFJH_07090 0.36 -2.6
1,447,816 - OLJFJH_07090 0.41 -2.6
1,447,873 - OLJFJH_07090 0.51 -1.0
1,447,876 - OLJFJH_07090 0.52 -2.9
1,447,926 + OLJFJH_07090 0.61 -0.2
1,447,926 + OLJFJH_07090 0.61 -0.6
1,447,933 + OLJFJH_07090 0.62 +0.2
1,447,933 + OLJFJH_07090 0.62 -1.8
1,447,933 + OLJFJH_07090 0.62 -0.9
1,447,934 - OLJFJH_07090 0.62 +0.8
1,447,934 - OLJFJH_07090 0.62 +0.0
1,447,934 - OLJFJH_07090 0.62 -2.4
1,448,150 - -1.0
1,448,168 + -0.2
1,448,250 + -0.6
1,448,250 + -1.5
1,448,292 + OLJFJH_07095 0.13 -1.2
1,448,352 + OLJFJH_07095 0.19 -1.3
1,448,713 - OLJFJH_07095 0.55 -1.2
1,448,773 + OLJFJH_07095 0.61 +0.6
1,448,773 + OLJFJH_07095 0.61 +1.1
1,448,773 + OLJFJH_07095 0.61 -1.4
1,448,773 + OLJFJH_07095 0.61 -1.5
1,448,776 + OLJFJH_07095 0.62 +1.1
1,448,776 + OLJFJH_07095 0.62 +0.2
1,448,776 + OLJFJH_07095 0.62 -0.8
1,448,776 + OLJFJH_07095 0.62 -2.9
1,448,777 - OLJFJH_07095 0.62 -1.8
1,448,841 + OLJFJH_07095 0.68 -2.1
1,448,911 + OLJFJH_07095 0.75 -1.0
1,448,998 + OLJFJH_07095 0.84 -0.7
1,448,998 + OLJFJH_07095 0.84 +0.3
1,448,998 + OLJFJH_07095 0.84 -0.8
1,448,999 - OLJFJH_07095 0.84 -2.0
1,448,999 - OLJFJH_07095 0.84 -1.1

Or see this region's nucleotide sequence