Strain Fitness in Erwinia amylovora T8 around OLJFJH_06150

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06145 and OLJFJH_06150 are separated by 192 nucleotidesOLJFJH_06150 and OLJFJH_06155 overlap by 4 nucleotidesOLJFJH_06155 and OLJFJH_06160 are separated by 99 nucleotides OLJFJH_06145: OLJFJH_06145 - Si-specific NAD(P)(+) transhydrogenase, at 1,241,761 to 1,243,161 _06145 OLJFJH_06150: OLJFJH_06150 - HTH-type transcriptional repressor FabR, at 1,243,354 to 1,244,010 _06150 OLJFJH_06155: OLJFJH_06155 - YijD family membrane protein, at 1,244,007 to 1,244,360 _06155 OLJFJH_06160: OLJFJH_06160 - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 1,244,460 to 1,245,563 _06160 Position (kb) 1243 1244 1245Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1242.582 kb on + strand, within OLJFJH_06145at 1242.582 kb on + strand, within OLJFJH_06145at 1242.582 kb on + strand, within OLJFJH_06145at 1242.590 kb on + strand, within OLJFJH_06145at 1242.617 kb on + strand, within OLJFJH_06145at 1242.617 kb on + strand, within OLJFJH_06145at 1242.617 kb on + strand, within OLJFJH_06145at 1242.617 kb on + strand, within OLJFJH_06145at 1242.617 kb on + strand, within OLJFJH_06145at 1242.618 kb on - strand, within OLJFJH_06145at 1242.618 kb on - strand, within OLJFJH_06145at 1242.618 kb on - strand, within OLJFJH_06145at 1242.622 kb on - strand, within OLJFJH_06145at 1242.671 kb on + strand, within OLJFJH_06145at 1242.671 kb on + strand, within OLJFJH_06145at 1242.671 kb on + strand, within OLJFJH_06145at 1242.672 kb on - strand, within OLJFJH_06145at 1242.672 kb on - strand, within OLJFJH_06145at 1242.672 kb on - strand, within OLJFJH_06145at 1242.675 kb on + strand, within OLJFJH_06145at 1242.676 kb on - strand, within OLJFJH_06145at 1242.824 kb on + strand, within OLJFJH_06145at 1242.848 kb on + strand, within OLJFJH_06145at 1242.848 kb on + strand, within OLJFJH_06145at 1242.848 kb on + strand, within OLJFJH_06145at 1242.849 kb on - strand, within OLJFJH_06145at 1242.937 kb on - strand, within OLJFJH_06145at 1242.937 kb on - strand, within OLJFJH_06145at 1242.937 kb on - strand, within OLJFJH_06145at 1242.937 kb on - strand, within OLJFJH_06145at 1242.947 kb on + strand, within OLJFJH_06145at 1242.947 kb on + strand, within OLJFJH_06145at 1242.948 kb on - strand, within OLJFJH_06145at 1242.948 kb on - strand, within OLJFJH_06145at 1242.975 kb on + strand, within OLJFJH_06145at 1242.975 kb on + strand, within OLJFJH_06145at 1243.026 kb on + strandat 1243.026 kb on + strandat 1243.026 kb on + strandat 1243.026 kb on + strandat 1243.026 kb on + strandat 1243.244 kb on - strandat 1243.244 kb on - strandat 1243.301 kb on + strandat 1243.301 kb on + strandat 1243.320 kb on + strandat 1243.320 kb on + strandat 1243.320 kb on + strandat 1243.321 kb on - strandat 1243.321 kb on - strandat 1243.321 kb on - strandat 1243.384 kb on - strandat 1243.384 kb on - strandat 1243.526 kb on + strand, within OLJFJH_06150at 1243.527 kb on - strand, within OLJFJH_06150at 1243.533 kb on - strand, within OLJFJH_06150at 1243.647 kb on + strand, within OLJFJH_06150at 1243.656 kb on + strand, within OLJFJH_06150at 1243.657 kb on - strand, within OLJFJH_06150at 1243.682 kb on + strand, within OLJFJH_06150at 1243.683 kb on - strand, within OLJFJH_06150at 1243.736 kb on + strand, within OLJFJH_06150at 1243.904 kb on + strand, within OLJFJH_06150at 1243.917 kb on + strand, within OLJFJH_06150at 1243.918 kb on - strand, within OLJFJH_06150at 1243.936 kb on + strand, within OLJFJH_06150at 1243.936 kb on + strand, within OLJFJH_06150at 1243.936 kb on + strand, within OLJFJH_06150at 1243.937 kb on - strand, within OLJFJH_06150at 1243.937 kb on - strand, within OLJFJH_06150at 1243.937 kb on - strand, within OLJFJH_06150at 1243.937 kb on - strand, within OLJFJH_06150at 1243.939 kb on + strand, within OLJFJH_06150at 1243.939 kb on + strand, within OLJFJH_06150at 1243.939 kb on + strand, within OLJFJH_06150at 1243.939 kb on + strand, within OLJFJH_06150at 1243.939 kb on + strand, within OLJFJH_06150at 1243.940 kb on - strand, within OLJFJH_06150at 1243.940 kb on - strand, within OLJFJH_06150at 1243.992 kb on + strandat 1243.993 kb on - strandat 1244.014 kb on + strandat 1244.014 kb on + strandat 1244.014 kb on + strandat 1244.015 kb on - strandat 1244.120 kb on - strand, within OLJFJH_06155at 1244.147 kb on + strand, within OLJFJH_06155at 1244.169 kb on + strand, within OLJFJH_06155at 1244.170 kb on - strand, within OLJFJH_06155at 1244.240 kb on - strand, within OLJFJH_06155at 1244.241 kb on + strand, within OLJFJH_06155at 1244.241 kb on + strand, within OLJFJH_06155at 1244.241 kb on + strand, within OLJFJH_06155at 1244.241 kb on + strand, within OLJFJH_06155at 1244.241 kb on + strand, within OLJFJH_06155at 1244.241 kb on + strand, within OLJFJH_06155at 1244.242 kb on - strand, within OLJFJH_06155at 1244.242 kb on - strand, within OLJFJH_06155at 1244.242 kb on - strand, within OLJFJH_06155at 1244.242 kb on - strand, within OLJFJH_06155at 1244.243 kb on + strand, within OLJFJH_06155at 1244.244 kb on - strand, within OLJFJH_06155at 1244.273 kb on + strand, within OLJFJH_06155at 1244.275 kb on + strand, within OLJFJH_06155at 1244.275 kb on + strand, within OLJFJH_06155at 1244.275 kb on + strand, within OLJFJH_06155at 1244.275 kb on + strand, within OLJFJH_06155at 1244.275 kb on + strand, within OLJFJH_06155at 1244.275 kb on + strand, within OLJFJH_06155at 1244.275 kb on + strand, within OLJFJH_06155at 1244.276 kb on - strand, within OLJFJH_06155at 1244.276 kb on - strand, within OLJFJH_06155at 1244.276 kb on - strand, within OLJFJH_06155at 1244.276 kb on - strand, within OLJFJH_06155at 1244.276 kb on - strand, within OLJFJH_06155at 1244.282 kb on + strand, within OLJFJH_06155at 1244.283 kb on - strand, within OLJFJH_06155at 1244.296 kb on + strand, within OLJFJH_06155at 1244.296 kb on + strand, within OLJFJH_06155at 1244.299 kb on + strand, within OLJFJH_06155at 1244.300 kb on - strand, within OLJFJH_06155at 1244.338 kb on + strandat 1244.339 kb on - strandat 1244.347 kb on - strandat 1244.394 kb on + strandat 1244.458 kb on + strandat 1244.462 kb on - strandat 1244.481 kb on + strandat 1244.481 kb on + strandat 1244.481 kb on + strandat 1244.481 kb on + strandat 1244.482 kb on - strandat 1244.482 kb on - strandat 1244.495 kb on + strandat 1244.598 kb on + strand, within OLJFJH_06160at 1244.598 kb on + strand, within OLJFJH_06160at 1244.598 kb on + strand, within OLJFJH_06160at 1244.599 kb on - strand, within OLJFJH_06160at 1244.599 kb on - strand, within OLJFJH_06160at 1244.599 kb on - strand, within OLJFJH_06160at 1244.599 kb on - strand, within OLJFJH_06160at 1244.599 kb on - strand, within OLJFJH_06160at 1244.600 kb on + strand, within OLJFJH_06160at 1244.600 kb on + strand, within OLJFJH_06160at 1244.600 kb on + strand, within OLJFJH_06160at 1244.601 kb on - strand, within OLJFJH_06160at 1244.601 kb on - strand, within OLJFJH_06160at 1244.601 kb on - strand, within OLJFJH_06160at 1244.601 kb on - strand, within OLJFJH_06160at 1244.601 kb on - strand, within OLJFJH_06160at 1244.602 kb on + strand, within OLJFJH_06160at 1244.602 kb on + strand, within OLJFJH_06160at 1244.602 kb on + strand, within OLJFJH_06160at 1244.602 kb on + strand, within OLJFJH_06160at 1244.602 kb on + strand, within OLJFJH_06160at 1244.603 kb on - strand, within OLJFJH_06160at 1244.603 kb on - strand, within OLJFJH_06160at 1244.603 kb on - strand, within OLJFJH_06160at 1244.603 kb on - strand, within OLJFJH_06160at 1244.603 kb on - strand, within OLJFJH_06160at 1244.603 kb on - strand, within OLJFJH_06160at 1244.677 kb on - strand, within OLJFJH_06160at 1244.784 kb on + strand, within OLJFJH_06160at 1244.784 kb on + strand, within OLJFJH_06160at 1244.784 kb on + strand, within OLJFJH_06160at 1244.785 kb on - strand, within OLJFJH_06160at 1244.785 kb on - strand, within OLJFJH_06160at 1244.793 kb on + strand, within OLJFJH_06160at 1244.811 kb on - strand, within OLJFJH_06160at 1244.811 kb on - strand, within OLJFJH_06160at 1244.911 kb on + strand, within OLJFJH_06160at 1244.912 kb on - strand, within OLJFJH_06160at 1244.979 kb on + strand, within OLJFJH_06160

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
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1,242,582 + OLJFJH_06145 0.59 -2.0
1,242,582 + OLJFJH_06145 0.59 -0.7
1,242,582 + OLJFJH_06145 0.59 -1.2
1,242,590 + OLJFJH_06145 0.59 -2.0
1,242,617 + OLJFJH_06145 0.61 -1.4
1,242,617 + OLJFJH_06145 0.61 -1.2
1,242,617 + OLJFJH_06145 0.61 -1.7
1,242,617 + OLJFJH_06145 0.61 +0.6
1,242,617 + OLJFJH_06145 0.61 -1.7
1,242,618 - OLJFJH_06145 0.61 -1.7
1,242,618 - OLJFJH_06145 0.61 -1.2
1,242,618 - OLJFJH_06145 0.61 -2.4
1,242,622 - OLJFJH_06145 0.61 -0.5
1,242,671 + OLJFJH_06145 0.65 -0.5
1,242,671 + OLJFJH_06145 0.65 -3.1
1,242,671 + OLJFJH_06145 0.65 +1.1
1,242,672 - OLJFJH_06145 0.65 -2.1
1,242,672 - OLJFJH_06145 0.65 -1.7
1,242,672 - OLJFJH_06145 0.65 -0.9
1,242,675 + OLJFJH_06145 0.65 -0.1
1,242,676 - OLJFJH_06145 0.65 -0.9
1,242,824 + OLJFJH_06145 0.76 -1.0
1,242,848 + OLJFJH_06145 0.78 +1.2
1,242,848 + OLJFJH_06145 0.78 -1.3
1,242,848 + OLJFJH_06145 0.78 -1.2
1,242,849 - OLJFJH_06145 0.78 +0.8
1,242,937 - OLJFJH_06145 0.84 -4.3
1,242,937 - OLJFJH_06145 0.84 -1.5
1,242,937 - OLJFJH_06145 0.84 -1.9
1,242,937 - OLJFJH_06145 0.84 -1.9
1,242,947 + OLJFJH_06145 0.85 -0.4
1,242,947 + OLJFJH_06145 0.85 -0.9
1,242,948 - OLJFJH_06145 0.85 -0.9
1,242,948 - OLJFJH_06145 0.85 -1.2
1,242,975 + OLJFJH_06145 0.87 -2.5
1,242,975 + OLJFJH_06145 0.87 -0.4
1,243,026 + -1.3
1,243,026 + -1.3
1,243,026 + -3.0
1,243,026 + -1.5
1,243,026 + -2.8
1,243,244 - +0.4
1,243,244 - -0.8
1,243,301 + +0.5
1,243,301 + +0.3
1,243,320 + +0.6
1,243,320 + -2.1
1,243,320 + -2.7
1,243,321 - -2.8
1,243,321 - -1.2
1,243,321 - -1.8
1,243,384 - -2.4
1,243,384 - +0.3
1,243,526 + OLJFJH_06150 0.26 -4.6
1,243,527 - OLJFJH_06150 0.26 -2.7
1,243,533 - OLJFJH_06150 0.27 -2.0
1,243,647 + OLJFJH_06150 0.45 -0.6
1,243,656 + OLJFJH_06150 0.46 -0.4
1,243,657 - OLJFJH_06150 0.46 -2.8
1,243,682 + OLJFJH_06150 0.50 -3.1
1,243,683 - OLJFJH_06150 0.50 -3.3
1,243,736 + OLJFJH_06150 0.58 -3.4
1,243,904 + OLJFJH_06150 0.84 -1.3
1,243,917 + OLJFJH_06150 0.86 -3.1
1,243,918 - OLJFJH_06150 0.86 -3.7
1,243,936 + OLJFJH_06150 0.89 -2.7
1,243,936 + OLJFJH_06150 0.89 -1.6
1,243,936 + OLJFJH_06150 0.89 -2.2
1,243,937 - OLJFJH_06150 0.89 -0.7
1,243,937 - OLJFJH_06150 0.89 -3.0
1,243,937 - OLJFJH_06150 0.89 -2.0
1,243,937 - OLJFJH_06150 0.89 -2.9
1,243,939 + OLJFJH_06150 0.89 -2.3
1,243,939 + OLJFJH_06150 0.89 -2.8
1,243,939 + OLJFJH_06150 0.89 -1.2
1,243,939 + OLJFJH_06150 0.89 -1.3
1,243,939 + OLJFJH_06150 0.89 -1.0
1,243,940 - OLJFJH_06150 0.89 -1.7
1,243,940 - OLJFJH_06150 0.89 -1.4
1,243,992 + -0.4
1,243,993 - -2.9
1,244,014 + -1.8
1,244,014 + -0.5
1,244,014 + +0.2
1,244,015 - +0.1
1,244,120 - OLJFJH_06155 0.32 +0.2
1,244,147 + OLJFJH_06155 0.40 +0.1
1,244,169 + OLJFJH_06155 0.46 +0.8
1,244,170 - OLJFJH_06155 0.46 +0.2
1,244,240 - OLJFJH_06155 0.66 -1.8
1,244,241 + OLJFJH_06155 0.66 -2.3
1,244,241 + OLJFJH_06155 0.66 -0.4
1,244,241 + OLJFJH_06155 0.66 -0.3
1,244,241 + OLJFJH_06155 0.66 -0.5
1,244,241 + OLJFJH_06155 0.66 +2.9
1,244,241 + OLJFJH_06155 0.66 +0.7
1,244,242 - OLJFJH_06155 0.66 -1.4
1,244,242 - OLJFJH_06155 0.66 +0.4
1,244,242 - OLJFJH_06155 0.66 +0.1
1,244,242 - OLJFJH_06155 0.66 +1.2
1,244,243 + OLJFJH_06155 0.67 -0.1
1,244,244 - OLJFJH_06155 0.67 +0.9
1,244,273 + OLJFJH_06155 0.75 -0.3
1,244,275 + OLJFJH_06155 0.76 -0.3
1,244,275 + OLJFJH_06155 0.76 +1.9
1,244,275 + OLJFJH_06155 0.76 -0.1
1,244,275 + OLJFJH_06155 0.76 +0.3
1,244,275 + OLJFJH_06155 0.76 -1.6
1,244,275 + OLJFJH_06155 0.76 -0.0
1,244,275 + OLJFJH_06155 0.76 -1.6
1,244,276 - OLJFJH_06155 0.76 +0.5
1,244,276 - OLJFJH_06155 0.76 +0.4
1,244,276 - OLJFJH_06155 0.76 -0.4
1,244,276 - OLJFJH_06155 0.76 -0.1
1,244,276 - OLJFJH_06155 0.76 -0.8
1,244,282 + OLJFJH_06155 0.78 +0.1
1,244,283 - OLJFJH_06155 0.78 +1.4
1,244,296 + OLJFJH_06155 0.82 -0.5
1,244,296 + OLJFJH_06155 0.82 +0.7
1,244,299 + OLJFJH_06155 0.82 +0.2
1,244,300 - OLJFJH_06155 0.83 -0.3
1,244,338 + -1.4
1,244,339 - -0.0
1,244,347 - +0.7
1,244,394 + -0.7
1,244,458 + +0.3
1,244,462 - +0.9
1,244,481 + +0.5
1,244,481 + -1.0
1,244,481 + -0.1
1,244,481 + -1.8
1,244,482 - -0.4
1,244,482 - -2.3
1,244,495 + -2.6
1,244,598 + OLJFJH_06160 0.12 -0.9
1,244,598 + OLJFJH_06160 0.12 +0.0
1,244,598 + OLJFJH_06160 0.12 -0.4
1,244,599 - OLJFJH_06160 0.13 -1.3
1,244,599 - OLJFJH_06160 0.13 +1.3
1,244,599 - OLJFJH_06160 0.13 -0.2
1,244,599 - OLJFJH_06160 0.13 -0.6
1,244,599 - OLJFJH_06160 0.13 -0.0
1,244,600 + OLJFJH_06160 0.13 -1.9
1,244,600 + OLJFJH_06160 0.13 +4.0
1,244,600 + OLJFJH_06160 0.13 -0.6
1,244,601 - OLJFJH_06160 0.13 +0.3
1,244,601 - OLJFJH_06160 0.13 +1.4
1,244,601 - OLJFJH_06160 0.13 -2.2
1,244,601 - OLJFJH_06160 0.13 +0.8
1,244,601 - OLJFJH_06160 0.13 -0.8
1,244,602 + OLJFJH_06160 0.13 +0.5
1,244,602 + OLJFJH_06160 0.13 -0.9
1,244,602 + OLJFJH_06160 0.13 +1.1
1,244,602 + OLJFJH_06160 0.13 -0.4
1,244,602 + OLJFJH_06160 0.13 -1.9
1,244,603 - OLJFJH_06160 0.13 +0.6
1,244,603 - OLJFJH_06160 0.13 -0.5
1,244,603 - OLJFJH_06160 0.13 +0.3
1,244,603 - OLJFJH_06160 0.13 -0.3
1,244,603 - OLJFJH_06160 0.13 -1.7
1,244,603 - OLJFJH_06160 0.13 -0.3
1,244,677 - OLJFJH_06160 0.20 -0.9
1,244,784 + OLJFJH_06160 0.29 -0.8
1,244,784 + OLJFJH_06160 0.29 -0.6
1,244,784 + OLJFJH_06160 0.29 +1.3
1,244,785 - OLJFJH_06160 0.29 +0.3
1,244,785 - OLJFJH_06160 0.29 +0.2
1,244,793 + OLJFJH_06160 0.30 +0.3
1,244,811 - OLJFJH_06160 0.32 -0.1
1,244,811 - OLJFJH_06160 0.32 -0.3
1,244,911 + OLJFJH_06160 0.41 -0.4
1,244,912 - OLJFJH_06160 0.41 -0.2
1,244,979 + OLJFJH_06160 0.47 +4.1

Or see this region's nucleotide sequence