Strain Fitness in Erwinia amylovora T8 around OLJFJH_06145

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06140 and OLJFJH_06145 overlap by 9 nucleotidesOLJFJH_06145 and OLJFJH_06150 are separated by 192 nucleotidesOLJFJH_06150 and OLJFJH_06155 overlap by 4 nucleotides OLJFJH_06140: OLJFJH_06140 - DNA-binding transcriptional regulator OxyR, at 1,240,864 to 1,241,769 _06140 OLJFJH_06145: OLJFJH_06145 - Si-specific NAD(P)(+) transhydrogenase, at 1,241,761 to 1,243,161 _06145 OLJFJH_06150: OLJFJH_06150 - HTH-type transcriptional repressor FabR, at 1,243,354 to 1,244,010 _06150 OLJFJH_06155: OLJFJH_06155 - YijD family membrane protein, at 1,244,007 to 1,244,360 _06155 Position (kb) 1241 1242 1243 1244Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1240.764 kb on + strandat 1240.764 kb on + strandat 1240.764 kb on + strandat 1240.764 kb on + strandat 1240.782 kb on + strandat 1240.782 kb on + strandat 1240.783 kb on - strandat 1240.783 kb on - strandat 1240.783 kb on - strandat 1240.783 kb on - strandat 1240.783 kb on - strandat 1240.785 kb on + strandat 1240.785 kb on + strandat 1240.785 kb on + strandat 1240.786 kb on - strandat 1240.861 kb on - strandat 1240.861 kb on - strandat 1240.870 kb on - strandat 1241.034 kb on + strand, within OLJFJH_06140at 1241.145 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.230 kb on + strand, within OLJFJH_06140at 1241.231 kb on - strand, within OLJFJH_06140at 1241.231 kb on - strand, within OLJFJH_06140at 1241.231 kb on - strand, within OLJFJH_06140at 1241.336 kb on + strand, within OLJFJH_06140at 1241.550 kb on + strand, within OLJFJH_06140at 1241.641 kb on + strand, within OLJFJH_06140at 1241.642 kb on - strand, within OLJFJH_06140at 1241.643 kb on + strand, within OLJFJH_06140at 1241.739 kb on + strandat 1241.739 kb on + strandat 1241.739 kb on + strandat 1241.739 kb on + strandat 1241.739 kb on + strandat 1241.739 kb on + strandat 1241.739 kb on + strandat 1241.740 kb on - strandat 1241.740 kb on - strandat 1241.740 kb on - strandat 1241.740 kb on - strandat 1241.740 kb on - strandat 1241.740 kb on - strandat 1241.740 kb on - strandat 1241.740 kb on - strandat 1241.763 kb on - strandat 1241.827 kb on - strandat 1241.835 kb on + strandat 1241.847 kb on - strandat 1241.901 kb on + strand, within OLJFJH_06145at 1242.021 kb on + strand, within OLJFJH_06145at 1242.021 kb on + strand, within OLJFJH_06145at 1242.022 kb on - strand, within OLJFJH_06145at 1242.022 kb on - strand, within OLJFJH_06145at 1242.022 kb on - strand, within OLJFJH_06145at 1242.044 kb on + strand, within OLJFJH_06145at 1242.110 kb on + strand, within OLJFJH_06145at 1242.111 kb on - strand, within OLJFJH_06145at 1242.126 kb on + strand, within OLJFJH_06145at 1242.180 kb on + strand, within OLJFJH_06145at 1242.181 kb on - strand, within OLJFJH_06145at 1242.195 kb on - strand, within OLJFJH_06145at 1242.235 kb on + strand, within OLJFJH_06145at 1242.236 kb on - strand, within OLJFJH_06145at 1242.242 kb on + strand, within OLJFJH_06145at 1242.242 kb on + strand, within OLJFJH_06145at 1242.242 kb on + strand, within OLJFJH_06145at 1242.242 kb on + strand, within OLJFJH_06145at 1242.243 kb on - strand, within OLJFJH_06145at 1242.243 kb on - strand, within OLJFJH_06145at 1242.243 kb on - strand, within OLJFJH_06145at 1242.243 kb on - strand, within OLJFJH_06145at 1242.246 kb on + strand, within OLJFJH_06145at 1242.247 kb on - strand, within OLJFJH_06145at 1242.247 kb on - strand, within OLJFJH_06145at 1242.266 kb on + strand, within OLJFJH_06145at 1242.266 kb on + strand, within OLJFJH_06145at 1242.266 kb on + strand, within OLJFJH_06145at 1242.267 kb on - strand, within OLJFJH_06145at 1242.582 kb on + strand, within OLJFJH_06145at 1242.582 kb on + strand, within OLJFJH_06145at 1242.582 kb on + strand, within OLJFJH_06145at 1242.590 kb on + strand, within OLJFJH_06145at 1242.617 kb on + strand, within OLJFJH_06145at 1242.617 kb on + strand, within OLJFJH_06145at 1242.617 kb on + strand, within OLJFJH_06145at 1242.617 kb on + strand, within OLJFJH_06145at 1242.617 kb on + strand, within OLJFJH_06145at 1242.618 kb on - strand, within OLJFJH_06145at 1242.618 kb on - strand, within OLJFJH_06145at 1242.618 kb on - strand, within OLJFJH_06145at 1242.622 kb on - strand, within OLJFJH_06145at 1242.671 kb on + strand, within OLJFJH_06145at 1242.671 kb on + strand, within OLJFJH_06145at 1242.671 kb on + strand, within OLJFJH_06145at 1242.672 kb on - strand, within OLJFJH_06145at 1242.672 kb on - strand, within OLJFJH_06145at 1242.672 kb on - strand, within OLJFJH_06145at 1242.675 kb on + strand, within OLJFJH_06145at 1242.676 kb on - strand, within OLJFJH_06145at 1242.824 kb on + strand, within OLJFJH_06145at 1242.848 kb on + strand, within OLJFJH_06145at 1242.848 kb on + strand, within OLJFJH_06145at 1242.848 kb on + strand, within OLJFJH_06145at 1242.849 kb on - strand, within OLJFJH_06145at 1242.937 kb on - strand, within OLJFJH_06145at 1242.937 kb on - strand, within OLJFJH_06145at 1242.937 kb on - strand, within OLJFJH_06145at 1242.937 kb on - strand, within OLJFJH_06145at 1242.947 kb on + strand, within OLJFJH_06145at 1242.947 kb on + strand, within OLJFJH_06145at 1242.948 kb on - strand, within OLJFJH_06145at 1242.948 kb on - strand, within OLJFJH_06145at 1242.975 kb on + strand, within OLJFJH_06145at 1242.975 kb on + strand, within OLJFJH_06145at 1243.026 kb on + strandat 1243.026 kb on + strandat 1243.026 kb on + strandat 1243.026 kb on + strandat 1243.026 kb on + strandat 1243.244 kb on - strandat 1243.244 kb on - strandat 1243.301 kb on + strandat 1243.301 kb on + strandat 1243.320 kb on + strandat 1243.320 kb on + strandat 1243.320 kb on + strandat 1243.321 kb on - strandat 1243.321 kb on - strandat 1243.321 kb on - strandat 1243.384 kb on - strandat 1243.384 kb on - strandat 1243.526 kb on + strand, within OLJFJH_06150at 1243.527 kb on - strand, within OLJFJH_06150at 1243.533 kb on - strand, within OLJFJH_06150at 1243.647 kb on + strand, within OLJFJH_06150at 1243.656 kb on + strand, within OLJFJH_06150at 1243.657 kb on - strand, within OLJFJH_06150at 1243.682 kb on + strand, within OLJFJH_06150at 1243.683 kb on - strand, within OLJFJH_06150at 1243.736 kb on + strand, within OLJFJH_06150at 1243.904 kb on + strand, within OLJFJH_06150at 1243.917 kb on + strand, within OLJFJH_06150at 1243.918 kb on - strand, within OLJFJH_06150at 1243.936 kb on + strand, within OLJFJH_06150at 1243.936 kb on + strand, within OLJFJH_06150at 1243.936 kb on + strand, within OLJFJH_06150at 1243.937 kb on - strand, within OLJFJH_06150at 1243.937 kb on - strand, within OLJFJH_06150at 1243.937 kb on - strand, within OLJFJH_06150at 1243.937 kb on - strand, within OLJFJH_06150at 1243.939 kb on + strand, within OLJFJH_06150at 1243.939 kb on + strand, within OLJFJH_06150at 1243.939 kb on + strand, within OLJFJH_06150at 1243.939 kb on + strand, within OLJFJH_06150at 1243.939 kb on + strand, within OLJFJH_06150at 1243.940 kb on - strand, within OLJFJH_06150at 1243.940 kb on - strand, within OLJFJH_06150at 1243.992 kb on + strandat 1243.993 kb on - strandat 1244.014 kb on + strandat 1244.014 kb on + strandat 1244.014 kb on + strandat 1244.015 kb on - strandat 1244.120 kb on - strand, within OLJFJH_06155at 1244.147 kb on + strand, within OLJFJH_06155

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
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1,240,764 + +1.3
1,240,764 + +1.7
1,240,764 + +2.2
1,240,764 + -1.3
1,240,782 + -0.5
1,240,782 + -0.6
1,240,783 - +0.8
1,240,783 - -0.9
1,240,783 - +0.4
1,240,783 - +0.9
1,240,783 - +0.2
1,240,785 + -0.1
1,240,785 + -1.3
1,240,785 + -0.0
1,240,786 - +0.4
1,240,861 - +0.6
1,240,861 - -1.3
1,240,870 - -0.8
1,241,034 + OLJFJH_06140 0.19 +0.2
1,241,145 + OLJFJH_06140 0.31 -1.7
1,241,230 + OLJFJH_06140 0.40 +1.2
1,241,230 + OLJFJH_06140 0.40 -0.8
1,241,230 + OLJFJH_06140 0.40 -0.3
1,241,230 + OLJFJH_06140 0.40 +1.3
1,241,230 + OLJFJH_06140 0.40 -0.5
1,241,230 + OLJFJH_06140 0.40 -0.0
1,241,230 + OLJFJH_06140 0.40 +0.2
1,241,231 - OLJFJH_06140 0.41 +0.4
1,241,231 - OLJFJH_06140 0.41 -1.8
1,241,231 - OLJFJH_06140 0.41 -0.9
1,241,336 + OLJFJH_06140 0.52 -1.2
1,241,550 + OLJFJH_06140 0.76 -1.3
1,241,641 + OLJFJH_06140 0.86 +0.6
1,241,642 - OLJFJH_06140 0.86 -0.3
1,241,643 + OLJFJH_06140 0.86 -1.2
1,241,739 + +0.8
1,241,739 + -1.3
1,241,739 + +0.8
1,241,739 + -0.8
1,241,739 + +0.1
1,241,739 + +0.5
1,241,739 + +0.1
1,241,740 - +0.1
1,241,740 - -0.6
1,241,740 - -0.0
1,241,740 - -0.4
1,241,740 - -0.5
1,241,740 - -0.6
1,241,740 - +0.5
1,241,740 - -0.2
1,241,763 - +0.9
1,241,827 - -2.3
1,241,835 + -1.3
1,241,847 - -1.5
1,241,901 + OLJFJH_06145 0.10 -0.8
1,242,021 + OLJFJH_06145 0.19 -1.4
1,242,021 + OLJFJH_06145 0.19 -0.6
1,242,022 - OLJFJH_06145 0.19 -0.5
1,242,022 - OLJFJH_06145 0.19 -1.8
1,242,022 - OLJFJH_06145 0.19 -0.4
1,242,044 + OLJFJH_06145 0.20 -2.2
1,242,110 + OLJFJH_06145 0.25 +0.9
1,242,111 - OLJFJH_06145 0.25 -1.5
1,242,126 + OLJFJH_06145 0.26 -1.3
1,242,180 + OLJFJH_06145 0.30 -1.8
1,242,181 - OLJFJH_06145 0.30 -0.2
1,242,195 - OLJFJH_06145 0.31 -2.4
1,242,235 + OLJFJH_06145 0.34 -2.9
1,242,236 - OLJFJH_06145 0.34 -1.7
1,242,242 + OLJFJH_06145 0.34 +0.6
1,242,242 + OLJFJH_06145 0.34 -0.4
1,242,242 + OLJFJH_06145 0.34 -1.1
1,242,242 + OLJFJH_06145 0.34 -1.6
1,242,243 - OLJFJH_06145 0.34 -1.2
1,242,243 - OLJFJH_06145 0.34 +0.1
1,242,243 - OLJFJH_06145 0.34 -0.6
1,242,243 - OLJFJH_06145 0.34 -2.3
1,242,246 + OLJFJH_06145 0.35 -0.9
1,242,247 - OLJFJH_06145 0.35 -1.8
1,242,247 - OLJFJH_06145 0.35 -0.8
1,242,266 + OLJFJH_06145 0.36 -2.1
1,242,266 + OLJFJH_06145 0.36 +0.1
1,242,266 + OLJFJH_06145 0.36 -0.6
1,242,267 - OLJFJH_06145 0.36 -1.5
1,242,582 + OLJFJH_06145 0.59 -2.0
1,242,582 + OLJFJH_06145 0.59 -0.7
1,242,582 + OLJFJH_06145 0.59 -1.2
1,242,590 + OLJFJH_06145 0.59 -2.0
1,242,617 + OLJFJH_06145 0.61 -1.4
1,242,617 + OLJFJH_06145 0.61 -1.2
1,242,617 + OLJFJH_06145 0.61 -1.7
1,242,617 + OLJFJH_06145 0.61 +0.6
1,242,617 + OLJFJH_06145 0.61 -1.7
1,242,618 - OLJFJH_06145 0.61 -1.7
1,242,618 - OLJFJH_06145 0.61 -1.2
1,242,618 - OLJFJH_06145 0.61 -2.4
1,242,622 - OLJFJH_06145 0.61 -0.5
1,242,671 + OLJFJH_06145 0.65 -0.5
1,242,671 + OLJFJH_06145 0.65 -3.1
1,242,671 + OLJFJH_06145 0.65 +1.1
1,242,672 - OLJFJH_06145 0.65 -2.1
1,242,672 - OLJFJH_06145 0.65 -1.7
1,242,672 - OLJFJH_06145 0.65 -0.9
1,242,675 + OLJFJH_06145 0.65 -0.1
1,242,676 - OLJFJH_06145 0.65 -0.9
1,242,824 + OLJFJH_06145 0.76 -1.0
1,242,848 + OLJFJH_06145 0.78 +1.2
1,242,848 + OLJFJH_06145 0.78 -1.3
1,242,848 + OLJFJH_06145 0.78 -1.2
1,242,849 - OLJFJH_06145 0.78 +0.8
1,242,937 - OLJFJH_06145 0.84 -4.3
1,242,937 - OLJFJH_06145 0.84 -1.5
1,242,937 - OLJFJH_06145 0.84 -1.9
1,242,937 - OLJFJH_06145 0.84 -1.9
1,242,947 + OLJFJH_06145 0.85 -0.4
1,242,947 + OLJFJH_06145 0.85 -0.9
1,242,948 - OLJFJH_06145 0.85 -0.9
1,242,948 - OLJFJH_06145 0.85 -1.2
1,242,975 + OLJFJH_06145 0.87 -2.5
1,242,975 + OLJFJH_06145 0.87 -0.4
1,243,026 + -1.3
1,243,026 + -1.3
1,243,026 + -3.0
1,243,026 + -1.5
1,243,026 + -2.8
1,243,244 - +0.4
1,243,244 - -0.8
1,243,301 + +0.5
1,243,301 + +0.3
1,243,320 + +0.6
1,243,320 + -2.1
1,243,320 + -2.7
1,243,321 - -2.8
1,243,321 - -1.2
1,243,321 - -1.8
1,243,384 - -2.4
1,243,384 - +0.3
1,243,526 + OLJFJH_06150 0.26 -4.6
1,243,527 - OLJFJH_06150 0.26 -2.7
1,243,533 - OLJFJH_06150 0.27 -2.0
1,243,647 + OLJFJH_06150 0.45 -0.6
1,243,656 + OLJFJH_06150 0.46 -0.4
1,243,657 - OLJFJH_06150 0.46 -2.8
1,243,682 + OLJFJH_06150 0.50 -3.1
1,243,683 - OLJFJH_06150 0.50 -3.3
1,243,736 + OLJFJH_06150 0.58 -3.4
1,243,904 + OLJFJH_06150 0.84 -1.3
1,243,917 + OLJFJH_06150 0.86 -3.1
1,243,918 - OLJFJH_06150 0.86 -3.7
1,243,936 + OLJFJH_06150 0.89 -2.7
1,243,936 + OLJFJH_06150 0.89 -1.6
1,243,936 + OLJFJH_06150 0.89 -2.2
1,243,937 - OLJFJH_06150 0.89 -0.7
1,243,937 - OLJFJH_06150 0.89 -3.0
1,243,937 - OLJFJH_06150 0.89 -2.0
1,243,937 - OLJFJH_06150 0.89 -2.9
1,243,939 + OLJFJH_06150 0.89 -2.3
1,243,939 + OLJFJH_06150 0.89 -2.8
1,243,939 + OLJFJH_06150 0.89 -1.2
1,243,939 + OLJFJH_06150 0.89 -1.3
1,243,939 + OLJFJH_06150 0.89 -1.0
1,243,940 - OLJFJH_06150 0.89 -1.7
1,243,940 - OLJFJH_06150 0.89 -1.4
1,243,992 + -0.4
1,243,993 - -2.9
1,244,014 + -1.8
1,244,014 + -0.5
1,244,014 + +0.2
1,244,015 - +0.1
1,244,120 - OLJFJH_06155 0.32 +0.2
1,244,147 + OLJFJH_06155 0.40 +0.1

Or see this region's nucleotide sequence