Strain Fitness in Erwinia amylovora T8 around OLJFJH_05930

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_05920 and OLJFJH_05925 are separated by 98 nucleotidesOLJFJH_05925 and OLJFJH_05930 are separated by 38 nucleotidesOLJFJH_05930 and OLJFJH_05935 overlap by 4 nucleotidesOLJFJH_05935 and OLJFJH_05940 are separated by 152 nucleotides OLJFJH_05920: OLJFJH_05920 - serine O-acetyltransferase, at 1,194,583 to 1,195,401 _05920 OLJFJH_05925: OLJFJH_05925 - tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL, at 1,195,500 to 1,195,970 _05925 OLJFJH_05930: OLJFJH_05930 - envelope stress sensor histidine kinase CpxA, at 1,196,009 to 1,197,388 _05930 OLJFJH_05935: OLJFJH_05935 - envelope stress response regulator transcription factor CpxR, at 1,197,385 to 1,198,086 _05935 OLJFJH_05940: OLJFJH_05940 - cell-envelope stress modulator CpxP, at 1,198,239 to 1,198,748 _05940 Position (kb) 1196 1197 1198Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1195.086 kb on + strand, within OLJFJH_05920at 1195.087 kb on - strand, within OLJFJH_05920at 1195.161 kb on + strand, within OLJFJH_05920at 1195.162 kb on - strand, within OLJFJH_05920at 1195.259 kb on + strand, within OLJFJH_05920at 1195.259 kb on + strand, within OLJFJH_05920at 1195.260 kb on - strand, within OLJFJH_05920at 1195.260 kb on - strand, within OLJFJH_05920at 1195.305 kb on + strand, within OLJFJH_05920at 1195.306 kb on - strand, within OLJFJH_05920at 1195.413 kb on - strandat 1195.413 kb on - strandat 1195.526 kb on - strandat 1195.575 kb on + strand, within OLJFJH_05925at 1195.575 kb on + strand, within OLJFJH_05925at 1195.575 kb on + strand, within OLJFJH_05925at 1195.687 kb on + strand, within OLJFJH_05925at 1195.688 kb on - strand, within OLJFJH_05925at 1195.703 kb on - strand, within OLJFJH_05925at 1195.851 kb on - strand, within OLJFJH_05925at 1195.956 kb on + strandat 1195.964 kb on + strandat 1195.964 kb on + strandat 1195.964 kb on + strandat 1195.965 kb on - strandat 1195.965 kb on - strandat 1196.027 kb on - strandat 1196.027 kb on - strandat 1196.028 kb on + strandat 1196.029 kb on - strandat 1196.029 kb on - strandat 1196.043 kb on - strandat 1196.303 kb on + strand, within OLJFJH_05930at 1196.303 kb on + strand, within OLJFJH_05930at 1196.303 kb on + strand, within OLJFJH_05930at 1196.359 kb on - strand, within OLJFJH_05930at 1196.639 kb on + strand, within OLJFJH_05930at 1196.639 kb on + strand, within OLJFJH_05930at 1196.639 kb on + strand, within OLJFJH_05930at 1196.639 kb on + strand, within OLJFJH_05930at 1196.639 kb on + strand, within OLJFJH_05930at 1196.639 kb on + strand, within OLJFJH_05930at 1196.640 kb on - strand, within OLJFJH_05930at 1196.640 kb on - strand, within OLJFJH_05930at 1196.640 kb on - strand, within OLJFJH_05930at 1196.810 kb on + strand, within OLJFJH_05930at 1196.810 kb on + strand, within OLJFJH_05930at 1196.852 kb on + strand, within OLJFJH_05930at 1196.866 kb on + strand, within OLJFJH_05930at 1196.866 kb on + strand, within OLJFJH_05930at 1196.958 kb on + strand, within OLJFJH_05930at 1196.958 kb on + strand, within OLJFJH_05930at 1196.958 kb on + strand, within OLJFJH_05930at 1196.959 kb on - strand, within OLJFJH_05930at 1196.959 kb on - strand, within OLJFJH_05930at 1196.959 kb on - strand, within OLJFJH_05930at 1196.967 kb on + strand, within OLJFJH_05930at 1196.967 kb on + strand, within OLJFJH_05930at 1196.967 kb on + strand, within OLJFJH_05930at 1197.091 kb on + strand, within OLJFJH_05930at 1197.092 kb on - strand, within OLJFJH_05930at 1197.195 kb on - strand, within OLJFJH_05930at 1197.365 kb on - strandat 1197.483 kb on + strand, within OLJFJH_05935at 1197.483 kb on + strand, within OLJFJH_05935at 1197.483 kb on + strand, within OLJFJH_05935at 1197.484 kb on - strand, within OLJFJH_05935at 1197.484 kb on - strand, within OLJFJH_05935at 1197.484 kb on - strand, within OLJFJH_05935at 1197.484 kb on - strand, within OLJFJH_05935at 1197.484 kb on - strand, within OLJFJH_05935at 1197.484 kb on - strand, within OLJFJH_05935at 1197.587 kb on + strand, within OLJFJH_05935at 1197.797 kb on + strand, within OLJFJH_05935at 1197.826 kb on + strand, within OLJFJH_05935at 1197.862 kb on - strand, within OLJFJH_05935at 1197.862 kb on - strand, within OLJFJH_05935at 1197.862 kb on - strand, within OLJFJH_05935at 1197.941 kb on - strand, within OLJFJH_05935at 1198.009 kb on - strand, within OLJFJH_05935at 1198.145 kb on - strandat 1198.223 kb on + strandat 1198.223 kb on + strandat 1198.223 kb on + strandat 1198.249 kb on + strandat 1198.250 kb on - strandat 1198.355 kb on + strand, within OLJFJH_05940at 1198.356 kb on - strand, within OLJFJH_05940

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
remove
1,195,086 + OLJFJH_05920 0.61 +1.3
1,195,087 - OLJFJH_05920 0.62 +0.3
1,195,161 + OLJFJH_05920 0.71 -0.7
1,195,162 - OLJFJH_05920 0.71 -0.7
1,195,259 + OLJFJH_05920 0.83 -1.1
1,195,259 + OLJFJH_05920 0.83 +1.9
1,195,260 - OLJFJH_05920 0.83 -1.6
1,195,260 - OLJFJH_05920 0.83 -0.6
1,195,305 + OLJFJH_05920 0.88 -0.4
1,195,306 - OLJFJH_05920 0.88 -0.1
1,195,413 - -0.2
1,195,413 - +0.9
1,195,526 - -0.3
1,195,575 + OLJFJH_05925 0.16 -0.4
1,195,575 + OLJFJH_05925 0.16 -0.1
1,195,575 + OLJFJH_05925 0.16 -0.6
1,195,687 + OLJFJH_05925 0.40 +1.1
1,195,688 - OLJFJH_05925 0.40 +0.2
1,195,703 - OLJFJH_05925 0.43 +0.3
1,195,851 - OLJFJH_05925 0.75 -0.5
1,195,956 + -2.0
1,195,964 + -0.1
1,195,964 + -1.7
1,195,964 + -0.4
1,195,965 - -1.3
1,195,965 - +0.9
1,196,027 - -0.6
1,196,027 - -1.2
1,196,028 + -0.4
1,196,029 - -2.1
1,196,029 - -0.1
1,196,043 - -0.7
1,196,303 + OLJFJH_05930 0.21 -2.7
1,196,303 + OLJFJH_05930 0.21 -1.4
1,196,303 + OLJFJH_05930 0.21 -1.5
1,196,359 - OLJFJH_05930 0.25 -1.3
1,196,639 + OLJFJH_05930 0.46 -2.5
1,196,639 + OLJFJH_05930 0.46 -3.7
1,196,639 + OLJFJH_05930 0.46 -2.2
1,196,639 + OLJFJH_05930 0.46 -2.2
1,196,639 + OLJFJH_05930 0.46 -1.7
1,196,639 + OLJFJH_05930 0.46 -2.5
1,196,640 - OLJFJH_05930 0.46 -3.1
1,196,640 - OLJFJH_05930 0.46 -2.6
1,196,640 - OLJFJH_05930 0.46 -2.9
1,196,810 + OLJFJH_05930 0.58 -0.9
1,196,810 + OLJFJH_05930 0.58 -1.6
1,196,852 + OLJFJH_05930 0.61 -0.3
1,196,866 + OLJFJH_05930 0.62 -2.2
1,196,866 + OLJFJH_05930 0.62 -0.7
1,196,958 + OLJFJH_05930 0.69 -1.9
1,196,958 + OLJFJH_05930 0.69 -1.5
1,196,958 + OLJFJH_05930 0.69 -1.6
1,196,959 - OLJFJH_05930 0.69 -3.0
1,196,959 - OLJFJH_05930 0.69 -2.4
1,196,959 - OLJFJH_05930 0.69 -0.5
1,196,967 + OLJFJH_05930 0.69 -1.1
1,196,967 + OLJFJH_05930 0.69 +0.3
1,196,967 + OLJFJH_05930 0.69 -1.3
1,197,091 + OLJFJH_05930 0.78 -1.1
1,197,092 - OLJFJH_05930 0.78 -2.5
1,197,195 - OLJFJH_05930 0.86 -0.1
1,197,365 - -0.8
1,197,483 + OLJFJH_05935 0.14 +0.1
1,197,483 + OLJFJH_05935 0.14 -1.0
1,197,483 + OLJFJH_05935 0.14 -0.1
1,197,484 - OLJFJH_05935 0.14 +0.6
1,197,484 - OLJFJH_05935 0.14 -0.1
1,197,484 - OLJFJH_05935 0.14 -0.3
1,197,484 - OLJFJH_05935 0.14 -0.4
1,197,484 - OLJFJH_05935 0.14 -0.6
1,197,484 - OLJFJH_05935 0.14 +1.3
1,197,587 + OLJFJH_05935 0.29 -0.7
1,197,797 + OLJFJH_05935 0.59 +0.1
1,197,826 + OLJFJH_05935 0.63 -1.7
1,197,862 - OLJFJH_05935 0.68 +0.3
1,197,862 - OLJFJH_05935 0.68 -0.1
1,197,862 - OLJFJH_05935 0.68 -0.9
1,197,941 - OLJFJH_05935 0.79 -1.7
1,198,009 - OLJFJH_05935 0.89 -1.5
1,198,145 - -1.6
1,198,223 + +0.0
1,198,223 + -1.2
1,198,223 + -2.0
1,198,249 + -0.3
1,198,250 - +1.7
1,198,355 + OLJFJH_05940 0.23 +1.0
1,198,356 - OLJFJH_05940 0.23 -0.9

Or see this region's nucleotide sequence