Strain Fitness in Erwinia amylovora T8 around OLJFJH_04815

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04810 and OLJFJH_04815 are separated by 309 nucleotidesOLJFJH_04815 and OLJFJH_04820 overlap by 4 nucleotides OLJFJH_04810: OLJFJH_04810 - biofilm formation regulator HmsP, at 945,471 to 947,465 _04810 OLJFJH_04815: OLJFJH_04815 - cellulose biosynthesis protein BcsE, at 947,775 to 949,256 _04815 OLJFJH_04820: OLJFJH_04820 - endoglucanase, at 949,253 to 950,251 _04820 Position (kb) 947 948 949 950Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 946.799 kb on - strand, within OLJFJH_04810at 946.799 kb on - strand, within OLJFJH_04810at 946.818 kb on + strand, within OLJFJH_04810at 946.818 kb on + strand, within OLJFJH_04810at 946.818 kb on + strand, within OLJFJH_04810at 946.818 kb on + strand, within OLJFJH_04810at 946.819 kb on - strand, within OLJFJH_04810at 946.819 kb on - strand, within OLJFJH_04810at 946.830 kb on - strand, within OLJFJH_04810at 946.852 kb on - strand, within OLJFJH_04810at 946.904 kb on + strand, within OLJFJH_04810at 946.937 kb on + strand, within OLJFJH_04810at 946.937 kb on + strand, within OLJFJH_04810at 946.938 kb on - strand, within OLJFJH_04810at 947.138 kb on + strand, within OLJFJH_04810at 947.202 kb on + strand, within OLJFJH_04810at 947.281 kb on - strandat 947.281 kb on - strandat 947.393 kb on + strandat 947.394 kb on - strandat 947.527 kb on + strandat 947.527 kb on + strandat 947.527 kb on + strandat 947.527 kb on + strandat 947.528 kb on - strandat 947.540 kb on - strandat 947.543 kb on + strandat 947.543 kb on + strandat 947.543 kb on + strandat 947.543 kb on + strandat 947.544 kb on - strandat 947.544 kb on - strandat 947.550 kb on + strandat 947.580 kb on - strandat 947.641 kb on - strandat 947.685 kb on - strandat 947.718 kb on + strandat 947.718 kb on + strandat 947.718 kb on + strandat 947.718 kb on + strandat 947.718 kb on + strandat 947.719 kb on - strandat 947.719 kb on - strandat 947.719 kb on - strandat 947.719 kb on - strandat 947.719 kb on - strandat 947.721 kb on - strandat 947.732 kb on + strandat 947.793 kb on - strandat 947.813 kb on + strandat 947.845 kb on + strandat 947.846 kb on - strandat 948.073 kb on - strand, within OLJFJH_04815at 948.073 kb on - strand, within OLJFJH_04815at 948.113 kb on - strand, within OLJFJH_04815at 948.131 kb on + strand, within OLJFJH_04815at 948.131 kb on + strand, within OLJFJH_04815at 948.131 kb on + strand, within OLJFJH_04815at 948.132 kb on - strand, within OLJFJH_04815at 948.132 kb on - strand, within OLJFJH_04815at 948.132 kb on - strand, within OLJFJH_04815at 948.132 kb on - strand, within OLJFJH_04815at 948.132 kb on - strand, within OLJFJH_04815at 948.221 kb on + strand, within OLJFJH_04815at 948.222 kb on - strand, within OLJFJH_04815at 948.391 kb on + strand, within OLJFJH_04815at 948.391 kb on + strand, within OLJFJH_04815at 948.391 kb on + strand, within OLJFJH_04815at 948.651 kb on - strand, within OLJFJH_04815at 948.651 kb on - strand, within OLJFJH_04815at 948.743 kb on + strand, within OLJFJH_04815at 948.746 kb on + strand, within OLJFJH_04815at 948.747 kb on - strand, within OLJFJH_04815at 948.813 kb on + strand, within OLJFJH_04815at 948.813 kb on + strand, within OLJFJH_04815at 948.814 kb on - strand, within OLJFJH_04815at 948.814 kb on - strand, within OLJFJH_04815at 948.814 kb on - strand, within OLJFJH_04815at 948.814 kb on - strand, within OLJFJH_04815at 948.814 kb on - strand, within OLJFJH_04815at 948.816 kb on - strand, within OLJFJH_04815at 949.068 kb on + strand, within OLJFJH_04815at 949.068 kb on + strand, within OLJFJH_04815at 949.069 kb on - strand, within OLJFJH_04815at 949.069 kb on - strand, within OLJFJH_04815at 949.122 kb on - strandat 949.122 kb on - strandat 949.122 kb on - strandat 949.264 kb on + strandat 949.265 kb on - strandat 949.303 kb on - strandat 949.303 kb on - strandat 949.305 kb on + strandat 949.391 kb on - strand, within OLJFJH_04820at 949.392 kb on + strand, within OLJFJH_04820at 949.392 kb on + strand, within OLJFJH_04820at 949.392 kb on + strand, within OLJFJH_04820at 949.392 kb on + strand, within OLJFJH_04820at 949.392 kb on + strand, within OLJFJH_04820at 949.392 kb on + strand, within OLJFJH_04820at 949.393 kb on - strand, within OLJFJH_04820at 949.393 kb on - strand, within OLJFJH_04820at 949.393 kb on - strand, within OLJFJH_04820at 949.393 kb on - strand, within OLJFJH_04820at 949.393 kb on - strand, within OLJFJH_04820at 949.393 kb on - strand, within OLJFJH_04820at 949.393 kb on - strand, within OLJFJH_04820at 949.393 kb on - strand, within OLJFJH_04820at 949.395 kb on + strand, within OLJFJH_04820at 949.396 kb on - strand, within OLJFJH_04820at 949.415 kb on + strand, within OLJFJH_04820at 949.503 kb on + strand, within OLJFJH_04820at 949.516 kb on - strand, within OLJFJH_04820at 949.516 kb on - strand, within OLJFJH_04820at 949.516 kb on - strand, within OLJFJH_04820at 949.525 kb on + strand, within OLJFJH_04820at 949.525 kb on + strand, within OLJFJH_04820at 949.526 kb on - strand, within OLJFJH_04820at 949.539 kb on + strand, within OLJFJH_04820at 949.540 kb on - strand, within OLJFJH_04820at 949.540 kb on - strand, within OLJFJH_04820at 949.540 kb on - strand, within OLJFJH_04820at 949.540 kb on - strand, within OLJFJH_04820at 949.540 kb on - strand, within OLJFJH_04820at 949.544 kb on - strand, within OLJFJH_04820at 949.685 kb on + strand, within OLJFJH_04820at 949.685 kb on + strand, within OLJFJH_04820at 949.685 kb on + strand, within OLJFJH_04820at 949.685 kb on + strand, within OLJFJH_04820at 949.685 kb on + strand, within OLJFJH_04820at 949.686 kb on - strand, within OLJFJH_04820at 949.731 kb on + strand, within OLJFJH_04820at 949.731 kb on + strand, within OLJFJH_04820at 949.731 kb on + strand, within OLJFJH_04820at 949.732 kb on - strand, within OLJFJH_04820at 949.752 kb on + strand, within OLJFJH_04820at 949.753 kb on - strand, within OLJFJH_04820at 949.753 kb on - strand, within OLJFJH_04820at 949.753 kb on - strand, within OLJFJH_04820at 949.762 kb on + strand, within OLJFJH_04820at 949.762 kb on + strand, within OLJFJH_04820at 949.843 kb on + strand, within OLJFJH_04820at 949.844 kb on - strand, within OLJFJH_04820at 949.916 kb on + strand, within OLJFJH_04820at 949.916 kb on + strand, within OLJFJH_04820at 949.916 kb on + strand, within OLJFJH_04820at 949.916 kb on + strand, within OLJFJH_04820at 949.917 kb on - strand, within OLJFJH_04820at 949.917 kb on - strand, within OLJFJH_04820at 949.917 kb on - strand, within OLJFJH_04820at 949.917 kb on - strand, within OLJFJH_04820at 949.974 kb on + strand, within OLJFJH_04820at 949.975 kb on - strand, within OLJFJH_04820at 950.065 kb on - strand, within OLJFJH_04820at 950.153 kb on - strandat 950.227 kb on + strandat 950.227 kb on + strandat 950.228 kb on - strandat 950.244 kb on - strandat 950.254 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
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946,799 - OLJFJH_04810 0.67 -4.0
946,799 - OLJFJH_04810 0.67 -2.1
946,818 + OLJFJH_04810 0.68 -2.4
946,818 + OLJFJH_04810 0.68 +0.5
946,818 + OLJFJH_04810 0.68 +0.5
946,818 + OLJFJH_04810 0.68 -0.0
946,819 - OLJFJH_04810 0.68 -2.0
946,819 - OLJFJH_04810 0.68 -4.7
946,830 - OLJFJH_04810 0.68 -4.1
946,852 - OLJFJH_04810 0.69 -3.6
946,904 + OLJFJH_04810 0.72 -3.7
946,937 + OLJFJH_04810 0.73 -4.1
946,937 + OLJFJH_04810 0.73 -1.4
946,938 - OLJFJH_04810 0.74 -1.5
947,138 + OLJFJH_04810 0.84 -3.8
947,202 + OLJFJH_04810 0.87 -0.5
947,281 - -2.4
947,281 - -0.8
947,393 + -3.5
947,394 - -3.9
947,527 + -2.0
947,527 + -1.0
947,527 + -1.2
947,527 + -4.1
947,528 - +2.5
947,540 - +1.5
947,543 + -1.7
947,543 + -0.0
947,543 + -2.4
947,543 + -3.1
947,544 - +1.4
947,544 - +2.6
947,550 + +1.2
947,580 - +2.4
947,641 - +4.6
947,685 - +2.3
947,718 + +2.2
947,718 + +1.3
947,718 + +0.3
947,718 + +1.0
947,718 + -0.1
947,719 - +1.7
947,719 - +1.6
947,719 - +0.3
947,719 - +0.6
947,719 - +2.5
947,721 - +4.0
947,732 + -0.0
947,793 - -0.2
947,813 + -2.7
947,845 + -2.7
947,846 - -0.5
948,073 - OLJFJH_04815 0.20 +0.1
948,073 - OLJFJH_04815 0.20 -1.0
948,113 - OLJFJH_04815 0.23 -1.6
948,131 + OLJFJH_04815 0.24 +0.1
948,131 + OLJFJH_04815 0.24 -2.1
948,131 + OLJFJH_04815 0.24 +0.8
948,132 - OLJFJH_04815 0.24 -2.4
948,132 - OLJFJH_04815 0.24 -0.2
948,132 - OLJFJH_04815 0.24 +0.1
948,132 - OLJFJH_04815 0.24 -1.9
948,132 - OLJFJH_04815 0.24 -0.9
948,221 + OLJFJH_04815 0.30 -0.6
948,222 - OLJFJH_04815 0.30 -1.2
948,391 + OLJFJH_04815 0.42 -2.2
948,391 + OLJFJH_04815 0.42 -3.4
948,391 + OLJFJH_04815 0.42 -4.0
948,651 - OLJFJH_04815 0.59 -4.1
948,651 - OLJFJH_04815 0.59 -3.4
948,743 + OLJFJH_04815 0.65 -4.7
948,746 + OLJFJH_04815 0.66 -2.7
948,747 - OLJFJH_04815 0.66 -2.5
948,813 + OLJFJH_04815 0.70 -0.8
948,813 + OLJFJH_04815 0.70 -1.4
948,814 - OLJFJH_04815 0.70 -3.2
948,814 - OLJFJH_04815 0.70 -2.3
948,814 - OLJFJH_04815 0.70 -2.4
948,814 - OLJFJH_04815 0.70 -2.8
948,814 - OLJFJH_04815 0.70 -3.0
948,816 - OLJFJH_04815 0.70 -1.8
949,068 + OLJFJH_04815 0.87 -0.0
949,068 + OLJFJH_04815 0.87 -0.4
949,069 - OLJFJH_04815 0.87 -3.8
949,069 - OLJFJH_04815 0.87 +0.2
949,122 - -0.0
949,122 - -0.4
949,122 - -0.5
949,264 + -0.6
949,265 - +0.5
949,303 - +1.3
949,303 - +2.1
949,305 + +2.4
949,391 - OLJFJH_04820 0.14 +2.6
949,392 + OLJFJH_04820 0.14 +1.7
949,392 + OLJFJH_04820 0.14 +4.6
949,392 + OLJFJH_04820 0.14 +1.8
949,392 + OLJFJH_04820 0.14 +4.3
949,392 + OLJFJH_04820 0.14 +2.4
949,392 + OLJFJH_04820 0.14 +0.7
949,393 - OLJFJH_04820 0.14 +0.9
949,393 - OLJFJH_04820 0.14 -0.2
949,393 - OLJFJH_04820 0.14 +2.4
949,393 - OLJFJH_04820 0.14 +2.2
949,393 - OLJFJH_04820 0.14 +0.4
949,393 - OLJFJH_04820 0.14 +2.0
949,393 - OLJFJH_04820 0.14 +2.5
949,393 - OLJFJH_04820 0.14 +2.0
949,395 + OLJFJH_04820 0.14 +3.9
949,396 - OLJFJH_04820 0.14 +1.8
949,415 + OLJFJH_04820 0.16 +2.8
949,503 + OLJFJH_04820 0.25 -0.5
949,516 - OLJFJH_04820 0.26 +2.8
949,516 - OLJFJH_04820 0.26 +3.7
949,516 - OLJFJH_04820 0.26 +2.0
949,525 + OLJFJH_04820 0.27 -1.4
949,525 + OLJFJH_04820 0.27 +1.6
949,526 - OLJFJH_04820 0.27 +1.7
949,539 + OLJFJH_04820 0.29 +3.1
949,540 - OLJFJH_04820 0.29 +2.4
949,540 - OLJFJH_04820 0.29 +4.7
949,540 - OLJFJH_04820 0.29 +0.9
949,540 - OLJFJH_04820 0.29 +2.1
949,540 - OLJFJH_04820 0.29 +2.4
949,544 - OLJFJH_04820 0.29 +5.9
949,685 + OLJFJH_04820 0.43 -0.0
949,685 + OLJFJH_04820 0.43 +3.2
949,685 + OLJFJH_04820 0.43 +1.4
949,685 + OLJFJH_04820 0.43 +1.0
949,685 + OLJFJH_04820 0.43 +1.9
949,686 - OLJFJH_04820 0.43 +3.1
949,731 + OLJFJH_04820 0.48 +4.7
949,731 + OLJFJH_04820 0.48 +2.7
949,731 + OLJFJH_04820 0.48 +2.1
949,732 - OLJFJH_04820 0.48 +1.6
949,752 + OLJFJH_04820 0.50 +2.0
949,753 - OLJFJH_04820 0.50 +1.9
949,753 - OLJFJH_04820 0.50 +5.8
949,753 - OLJFJH_04820 0.50 +4.5
949,762 + OLJFJH_04820 0.51 +1.5
949,762 + OLJFJH_04820 0.51 +4.7
949,843 + OLJFJH_04820 0.59 +3.5
949,844 - OLJFJH_04820 0.59 +2.1
949,916 + OLJFJH_04820 0.66 +2.0
949,916 + OLJFJH_04820 0.66 +1.4
949,916 + OLJFJH_04820 0.66 +2.1
949,916 + OLJFJH_04820 0.66 +3.3
949,917 - OLJFJH_04820 0.66 +1.9
949,917 - OLJFJH_04820 0.66 +1.8
949,917 - OLJFJH_04820 0.66 -0.0
949,917 - OLJFJH_04820 0.66 +2.6
949,974 + OLJFJH_04820 0.72 +2.2
949,975 - OLJFJH_04820 0.72 +2.6
950,065 - OLJFJH_04820 0.81 -2.4
950,153 - +1.9
950,227 + +2.1
950,227 + +0.6
950,228 - +1.6
950,244 - -1.7
950,254 + +3.6

Or see this region's nucleotide sequence