Strain Fitness in Erwinia amylovora T8 around OLJFJH_01655

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01645 and OLJFJH_01655 are separated by 273 nucleotidesOLJFJH_01655 and OLJFJH_01660 are separated by 94 nucleotidesOLJFJH_01660 and OLJFJH_01665 overlap by 1 nucleotides OLJFJH_01645: OLJFJH_01645 - molecular chaperone OsmY, at 277,142 to 277,756 _01645 OLJFJH_01655: OLJFJH_01655 - peptide chain release factor 3, at 278,030 to 279,619 _01655 OLJFJH_01660: OLJFJH_01660 - hypothetical protein, at 279,714 to 279,956 _01660 OLJFJH_01665: OLJFJH_01665 - acyltransferase, at 279,956 to 281,095 _01665 Position (kb) 278 279 280Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 277.031 kb on + strandat 277.032 kb on - strandat 277.058 kb on + strandat 277.125 kb on - strandat 277.520 kb on - strand, within OLJFJH_01645at 277.591 kb on + strand, within OLJFJH_01645at 277.591 kb on + strand, within OLJFJH_01645at 277.661 kb on - strand, within OLJFJH_01645at 277.713 kb on - strandat 277.744 kb on + strandat 277.898 kb on + strandat 277.899 kb on - strandat 277.900 kb on + strandat 277.900 kb on + strandat 277.901 kb on - strandat 277.901 kb on - strandat 277.901 kb on - strandat 277.901 kb on - strandat 277.901 kb on - strandat 277.932 kb on - strandat 278.021 kb on - strandat 278.031 kb on + strandat 278.032 kb on - strandat 278.112 kb on + strandat 278.113 kb on - strandat 278.113 kb on - strandat 278.113 kb on - strandat 278.250 kb on + strand, within OLJFJH_01655at 278.251 kb on - strand, within OLJFJH_01655at 278.345 kb on + strand, within OLJFJH_01655at 278.346 kb on - strand, within OLJFJH_01655at 278.370 kb on - strand, within OLJFJH_01655at 278.370 kb on - strand, within OLJFJH_01655at 278.370 kb on - strand, within OLJFJH_01655at 278.468 kb on - strand, within OLJFJH_01655at 278.576 kb on - strand, within OLJFJH_01655at 278.614 kb on + strand, within OLJFJH_01655at 278.705 kb on - strand, within OLJFJH_01655at 278.818 kb on + strand, within OLJFJH_01655at 278.868 kb on - strand, within OLJFJH_01655at 279.048 kb on + strand, within OLJFJH_01655at 279.048 kb on + strand, within OLJFJH_01655at 279.049 kb on - strand, within OLJFJH_01655at 279.063 kb on + strand, within OLJFJH_01655at 279.063 kb on + strand, within OLJFJH_01655at 279.063 kb on + strand, within OLJFJH_01655at 279.063 kb on + strand, within OLJFJH_01655at 279.326 kb on - strand, within OLJFJH_01655at 279.326 kb on - strand, within OLJFJH_01655at 279.368 kb on + strand, within OLJFJH_01655at 279.605 kb on + strandat 279.609 kb on - strandat 279.635 kb on + strandat 279.635 kb on + strandat 279.635 kb on + strandat 279.636 kb on - strandat 279.636 kb on - strandat 279.639 kb on + strandat 279.640 kb on - strandat 279.652 kb on - strandat 279.657 kb on + strandat 279.688 kb on + strandat 279.689 kb on - strandat 279.811 kb on + strand, within OLJFJH_01660at 279.891 kb on + strand, within OLJFJH_01660at 279.891 kb on + strand, within OLJFJH_01660at 279.934 kb on + strandat 279.935 kb on - strandat 279.935 kb on - strandat 279.937 kb on + strandat 279.938 kb on - strandat 280.028 kb on - strandat 280.028 kb on - strandat 280.089 kb on + strand, within OLJFJH_01665at 280.089 kb on + strand, within OLJFJH_01665at 280.127 kb on + strand, within OLJFJH_01665at 280.265 kb on + strand, within OLJFJH_01665at 280.328 kb on - strand, within OLJFJH_01665at 280.356 kb on + strand, within OLJFJH_01665at 280.593 kb on - strand, within OLJFJH_01665

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
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277,031 + +0.0
277,032 - -2.5
277,058 + +0.2
277,125 - +0.1
277,520 - OLJFJH_01645 0.61 +0.2
277,591 + OLJFJH_01645 0.73 +0.5
277,591 + OLJFJH_01645 0.73 +0.5
277,661 - OLJFJH_01645 0.84 -0.1
277,713 - -0.3
277,744 + +0.6
277,898 + +0.1
277,899 - -1.4
277,900 + +0.3
277,900 + -0.6
277,901 - +1.7
277,901 - +0.2
277,901 - +0.0
277,901 - -0.9
277,901 - +1.6
277,932 - +0.5
278,021 - +0.6
278,031 + -0.1
278,032 - +0.3
278,112 + +0.1
278,113 - +0.5
278,113 - -1.7
278,113 - -2.3
278,250 + OLJFJH_01655 0.14 +1.3
278,251 - OLJFJH_01655 0.14 -2.4
278,345 + OLJFJH_01655 0.20 -0.5
278,346 - OLJFJH_01655 0.20 -3.0
278,370 - OLJFJH_01655 0.21 -0.7
278,370 - OLJFJH_01655 0.21 -1.5
278,370 - OLJFJH_01655 0.21 +0.1
278,468 - OLJFJH_01655 0.28 -1.5
278,576 - OLJFJH_01655 0.34 -1.9
278,614 + OLJFJH_01655 0.37 +0.1
278,705 - OLJFJH_01655 0.42 -2.4
278,818 + OLJFJH_01655 0.50 +0.9
278,868 - OLJFJH_01655 0.53 -2.3
279,048 + OLJFJH_01655 0.64 -2.3
279,048 + OLJFJH_01655 0.64 +0.5
279,049 - OLJFJH_01655 0.64 +0.9
279,063 + OLJFJH_01655 0.65 -2.5
279,063 + OLJFJH_01655 0.65 -1.4
279,063 + OLJFJH_01655 0.65 -0.5
279,063 + OLJFJH_01655 0.65 -0.6
279,326 - OLJFJH_01655 0.82 -1.9
279,326 - OLJFJH_01655 0.82 -1.9
279,368 + OLJFJH_01655 0.84 -0.5
279,605 + -1.5
279,609 - -1.9
279,635 + -0.5
279,635 + +0.5
279,635 + -2.1
279,636 - -0.9
279,636 - -0.1
279,639 + -2.5
279,640 - -2.5
279,652 - -1.1
279,657 + -1.0
279,688 + -3.9
279,689 - -1.0
279,811 + OLJFJH_01660 0.40 -0.6
279,891 + OLJFJH_01660 0.73 +0.3
279,891 + OLJFJH_01660 0.73 +0.0
279,934 + +1.5
279,935 - -3.1
279,935 - +0.5
279,937 + -0.8
279,938 - +0.5
280,028 - -0.8
280,028 - -1.1
280,089 + OLJFJH_01665 0.12 -1.9
280,089 + OLJFJH_01665 0.12 -0.1
280,127 + OLJFJH_01665 0.15 -1.2
280,265 + OLJFJH_01665 0.27 +0.6
280,328 - OLJFJH_01665 0.33 +1.0
280,356 + OLJFJH_01665 0.35 -0.7
280,593 - OLJFJH_01665 0.56 -1.4

Or see this region's nucleotide sequence