Strain Fitness in Erwinia amylovora T8 around OLJFJH_01415

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_01410 and OLJFJH_01415 overlap by 20 nucleotidesOLJFJH_01415 and OLJFJH_01420 are separated by 3 nucleotidesOLJFJH_01420 and OLJFJH_01425 overlap by 4 nucleotides OLJFJH_01410: OLJFJH_01410 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 226,487 to 227,440 _01410 OLJFJH_01415: OLJFJH_01415 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 227,421 to 227,891 _01415 OLJFJH_01420: OLJFJH_01420 - signal peptidase II, at 227,895 to 228,404 _01420 OLJFJH_01425: OLJFJH_01425 - Isoleucine--tRNA ligase, at 228,401 to 231,217 _01425 Position (kb) 227 228Strain fitness (log2 ratio) -2 -1 0 1at 226.488 kb on + strandat 227.802 kb on - strand, within OLJFJH_01415at 227.805 kb on - strand, within OLJFJH_01415at 227.947 kb on - strand, within OLJFJH_01420

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-2
remove
226,488 + -0.5
227,802 - OLJFJH_01415 0.81 -1.1
227,805 - OLJFJH_01415 0.82 -1.8
227,947 - OLJFJH_01420 0.10 -1.7

Or see this region's nucleotide sequence