Strain Fitness in Erwinia amylovora T8 around OLJFJH_17350

Experiment: Matrix:KB soft agar;Phage:PBS;Temp:17;Samp:24-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17345 and OLJFJH_17350 are separated by 10 nucleotidesOLJFJH_17350 and OLJFJH_17355 overlap by 4 nucleotides OLJFJH_17345: OLJFJH_17345 - lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase, at 3,658,619 to 3,660,280 _17345 OLJFJH_17350: OLJFJH_17350 - 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase, at 3,660,291 to 3,661,181 _17350 OLJFJH_17355: OLJFJH_17355 - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 3,661,178 to 3,663,160 _17355 Position (kb) 3660 3661 3662Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3659.332 kb on + strand, within OLJFJH_17345at 3659.332 kb on + strand, within OLJFJH_17345at 3659.333 kb on - strand, within OLJFJH_17345at 3659.334 kb on + strand, within OLJFJH_17345at 3659.335 kb on - strand, within OLJFJH_17345at 3659.335 kb on - strand, within OLJFJH_17345at 3659.335 kb on - strand, within OLJFJH_17345at 3659.335 kb on - strand, within OLJFJH_17345at 3659.335 kb on - strand, within OLJFJH_17345at 3659.335 kb on - strand, within OLJFJH_17345at 3659.401 kb on - strand, within OLJFJH_17345at 3659.502 kb on + strand, within OLJFJH_17345at 3659.503 kb on - strand, within OLJFJH_17345at 3659.503 kb on - strand, within OLJFJH_17345at 3659.522 kb on - strand, within OLJFJH_17345at 3659.574 kb on + strand, within OLJFJH_17345at 3659.575 kb on - strand, within OLJFJH_17345at 3659.629 kb on + strand, within OLJFJH_17345at 3659.630 kb on - strand, within OLJFJH_17345at 3659.882 kb on + strand, within OLJFJH_17345at 3659.889 kb on + strand, within OLJFJH_17345at 3659.890 kb on - strand, within OLJFJH_17345at 3659.927 kb on + strand, within OLJFJH_17345at 3659.927 kb on + strand, within OLJFJH_17345at 3659.927 kb on + strand, within OLJFJH_17345at 3659.985 kb on + strand, within OLJFJH_17345at 3659.985 kb on + strand, within OLJFJH_17345at 3659.986 kb on - strand, within OLJFJH_17345at 3660.228 kb on + strandat 3660.229 kb on - strandat 3660.241 kb on - strandat 3660.241 kb on - strandat 3660.254 kb on + strandat 3660.255 kb on - strandat 3660.273 kb on + strandat 3660.273 kb on + strandat 3660.274 kb on - strandat 3660.274 kb on - strandat 3660.345 kb on + strandat 3660.387 kb on + strand, within OLJFJH_17350at 3660.388 kb on - strand, within OLJFJH_17350at 3660.459 kb on - strand, within OLJFJH_17350at 3660.493 kb on + strand, within OLJFJH_17350at 3660.493 kb on + strand, within OLJFJH_17350at 3660.493 kb on + strand, within OLJFJH_17350at 3660.493 kb on + strand, within OLJFJH_17350at 3660.493 kb on + strand, within OLJFJH_17350at 3660.494 kb on - strand, within OLJFJH_17350at 3660.494 kb on - strand, within OLJFJH_17350at 3660.494 kb on - strand, within OLJFJH_17350at 3660.494 kb on - strand, within OLJFJH_17350at 3660.533 kb on + strand, within OLJFJH_17350at 3660.544 kb on + strand, within OLJFJH_17350at 3660.544 kb on + strand, within OLJFJH_17350at 3660.677 kb on - strand, within OLJFJH_17350at 3660.795 kb on + strand, within OLJFJH_17350at 3660.958 kb on - strand, within OLJFJH_17350at 3661.023 kb on + strand, within OLJFJH_17350at 3661.023 kb on + strand, within OLJFJH_17350at 3661.026 kb on + strand, within OLJFJH_17350at 3661.027 kb on - strand, within OLJFJH_17350at 3661.049 kb on + strand, within OLJFJH_17350at 3661.336 kb on - strandat 3661.474 kb on + strand, within OLJFJH_17355at 3661.474 kb on + strand, within OLJFJH_17355at 3661.475 kb on - strand, within OLJFJH_17355at 3661.475 kb on - strand, within OLJFJH_17355at 3661.790 kb on - strand, within OLJFJH_17355at 3661.813 kb on + strand, within OLJFJH_17355at 3661.843 kb on + strand, within OLJFJH_17355at 3661.968 kb on + strand, within OLJFJH_17355at 3661.969 kb on - strand, within OLJFJH_17355at 3661.974 kb on - strand, within OLJFJH_17355at 3662.028 kb on + strand, within OLJFJH_17355at 3662.029 kb on - strand, within OLJFJH_17355at 3662.029 kb on - strand, within OLJFJH_17355

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:PBS;Temp:17;Samp:24-7
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3,659,332 + OLJFJH_17345 0.43 +1.7
3,659,332 + OLJFJH_17345 0.43 -0.4
3,659,333 - OLJFJH_17345 0.43 +0.3
3,659,334 + OLJFJH_17345 0.43 -0.2
3,659,335 - OLJFJH_17345 0.43 +0.0
3,659,335 - OLJFJH_17345 0.43 -0.5
3,659,335 - OLJFJH_17345 0.43 -0.7
3,659,335 - OLJFJH_17345 0.43 +1.0
3,659,335 - OLJFJH_17345 0.43 +0.3
3,659,335 - OLJFJH_17345 0.43 -0.1
3,659,401 - OLJFJH_17345 0.47 +0.7
3,659,502 + OLJFJH_17345 0.53 -0.1
3,659,503 - OLJFJH_17345 0.53 +0.9
3,659,503 - OLJFJH_17345 0.53 +0.2
3,659,522 - OLJFJH_17345 0.54 -0.0
3,659,574 + OLJFJH_17345 0.57 -1.0
3,659,575 - OLJFJH_17345 0.58 +0.1
3,659,629 + OLJFJH_17345 0.61 +0.4
3,659,630 - OLJFJH_17345 0.61 +1.5
3,659,882 + OLJFJH_17345 0.76 +0.3
3,659,889 + OLJFJH_17345 0.76 -0.1
3,659,890 - OLJFJH_17345 0.76 -0.1
3,659,927 + OLJFJH_17345 0.79 -1.0
3,659,927 + OLJFJH_17345 0.79 +0.6
3,659,927 + OLJFJH_17345 0.79 -0.3
3,659,985 + OLJFJH_17345 0.82 +0.0
3,659,985 + OLJFJH_17345 0.82 +0.3
3,659,986 - OLJFJH_17345 0.82 +1.2
3,660,228 + -0.6
3,660,229 - -0.1
3,660,241 - +0.4
3,660,241 - +1.5
3,660,254 + -0.2
3,660,255 - -2.8
3,660,273 + +0.6
3,660,273 + -1.0
3,660,274 - +1.4
3,660,274 - -0.0
3,660,345 + +0.4
3,660,387 + OLJFJH_17350 0.11 -0.4
3,660,388 - OLJFJH_17350 0.11 -0.3
3,660,459 - OLJFJH_17350 0.19 +0.3
3,660,493 + OLJFJH_17350 0.23 +0.3
3,660,493 + OLJFJH_17350 0.23 +1.7
3,660,493 + OLJFJH_17350 0.23 +0.1
3,660,493 + OLJFJH_17350 0.23 -1.1
3,660,493 + OLJFJH_17350 0.23 -0.3
3,660,494 - OLJFJH_17350 0.23 +0.4
3,660,494 - OLJFJH_17350 0.23 +0.3
3,660,494 - OLJFJH_17350 0.23 +0.1
3,660,494 - OLJFJH_17350 0.23 +4.0
3,660,533 + OLJFJH_17350 0.27 +0.9
3,660,544 + OLJFJH_17350 0.28 -0.8
3,660,544 + OLJFJH_17350 0.28 -0.9
3,660,677 - OLJFJH_17350 0.43 +0.8
3,660,795 + OLJFJH_17350 0.57 +0.1
3,660,958 - OLJFJH_17350 0.75 +0.7
3,661,023 + OLJFJH_17350 0.82 -0.3
3,661,023 + OLJFJH_17350 0.82 +0.1
3,661,026 + OLJFJH_17350 0.82 +0.2
3,661,027 - OLJFJH_17350 0.83 -0.9
3,661,049 + OLJFJH_17350 0.85 +1.0
3,661,336 - +0.0
3,661,474 + OLJFJH_17355 0.15 -0.4
3,661,474 + OLJFJH_17355 0.15 -0.1
3,661,475 - OLJFJH_17355 0.15 -0.2
3,661,475 - OLJFJH_17355 0.15 -0.7
3,661,790 - OLJFJH_17355 0.31 +1.1
3,661,813 + OLJFJH_17355 0.32 +1.2
3,661,843 + OLJFJH_17355 0.34 -0.1
3,661,968 + OLJFJH_17355 0.40 +0.5
3,661,969 - OLJFJH_17355 0.40 -0.4
3,661,974 - OLJFJH_17355 0.40 +0.0
3,662,028 + OLJFJH_17355 0.43 +0.2
3,662,029 - OLJFJH_17355 0.43 -0.9
3,662,029 - OLJFJH_17355 0.43 +0.8

Or see this region's nucleotide sequence