Strain Fitness in Erwinia amylovora T8 around OLJFJH_08945

Experiment: Matrix:KB soft agar;Phage:PBS;Temp:17;Samp:24-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08940 and OLJFJH_08945 are separated by 28 nucleotidesOLJFJH_08945 and OLJFJH_08950 are separated by 113 nucleotidesOLJFJH_08950 and OLJFJH_08955 are separated by 81 nucleotides OLJFJH_08940: OLJFJH_08940 - recombinase XerD, at 1,835,091 to 1,836,131 _08940 OLJFJH_08945: OLJFJH_08945 - DnaG primase-like protein, at 1,836,160 to 1,839,195 _08945 OLJFJH_08950: OLJFJH_08950 - HTH-type transcriptional regulator dicA Repressor protein of division inhibition gene dicA, at 1,839,309 to 1,839,734 _08950 OLJFJH_08955: OLJFJH_08955 - endoribonuclease SymE, at 1,839,816 to 1,840,163 _08955 Position (kb) 1836 1837 1838 1839 1840Strain fitness (log2 ratio) -2 -1 0 1 2at 1835.335 kb on + strand, within OLJFJH_08940at 1835.336 kb on - strand, within OLJFJH_08940at 1835.452 kb on + strand, within OLJFJH_08940at 1835.532 kb on + strand, within OLJFJH_08940at 1835.532 kb on + strand, within OLJFJH_08940at 1835.533 kb on - strand, within OLJFJH_08940at 1835.533 kb on - strand, within OLJFJH_08940at 1835.557 kb on + strand, within OLJFJH_08940at 1835.557 kb on + strand, within OLJFJH_08940at 1835.557 kb on + strand, within OLJFJH_08940at 1835.557 kb on + strand, within OLJFJH_08940at 1835.557 kb on + strand, within OLJFJH_08940at 1835.558 kb on - strand, within OLJFJH_08940at 1835.694 kb on + strand, within OLJFJH_08940at 1835.695 kb on - strand, within OLJFJH_08940at 1835.695 kb on - strand, within OLJFJH_08940at 1835.918 kb on - strand, within OLJFJH_08940at 1836.038 kb on - strandat 1836.083 kb on + strandat 1836.179 kb on - strandat 1836.223 kb on + strandat 1836.544 kb on + strand, within OLJFJH_08945at 1836.770 kb on + strand, within OLJFJH_08945at 1836.770 kb on + strand, within OLJFJH_08945at 1836.770 kb on + strand, within OLJFJH_08945at 1836.770 kb on + strand, within OLJFJH_08945at 1836.771 kb on - strand, within OLJFJH_08945at 1836.847 kb on + strand, within OLJFJH_08945at 1836.857 kb on + strand, within OLJFJH_08945at 1836.857 kb on + strand, within OLJFJH_08945at 1836.858 kb on - strand, within OLJFJH_08945at 1836.858 kb on - strand, within OLJFJH_08945at 1836.865 kb on - strand, within OLJFJH_08945at 1837.325 kb on + strand, within OLJFJH_08945at 1837.484 kb on + strand, within OLJFJH_08945at 1837.746 kb on + strand, within OLJFJH_08945at 1837.747 kb on - strand, within OLJFJH_08945at 1837.748 kb on + strand, within OLJFJH_08945at 1837.748 kb on + strand, within OLJFJH_08945at 1837.748 kb on + strand, within OLJFJH_08945at 1837.748 kb on + strand, within OLJFJH_08945at 1837.749 kb on - strand, within OLJFJH_08945at 1837.749 kb on - strand, within OLJFJH_08945at 1837.749 kb on - strand, within OLJFJH_08945at 1837.772 kb on + strand, within OLJFJH_08945at 1837.772 kb on + strand, within OLJFJH_08945at 1837.772 kb on + strand, within OLJFJH_08945at 1837.773 kb on - strand, within OLJFJH_08945at 1837.773 kb on - strand, within OLJFJH_08945at 1837.773 kb on - strand, within OLJFJH_08945at 1837.773 kb on - strand, within OLJFJH_08945at 1837.773 kb on - strand, within OLJFJH_08945at 1837.773 kb on - strand, within OLJFJH_08945at 1837.773 kb on - strand, within OLJFJH_08945at 1837.773 kb on - strand, within OLJFJH_08945at 1837.776 kb on + strand, within OLJFJH_08945at 1837.777 kb on - strand, within OLJFJH_08945at 1837.777 kb on - strand, within OLJFJH_08945at 1837.855 kb on - strand, within OLJFJH_08945at 1838.448 kb on - strand, within OLJFJH_08945at 1839.105 kb on + strandat 1839.106 kb on - strandat 1839.114 kb on + strandat 1839.160 kb on + strandat 1839.256 kb on - strandat 1839.258 kb on - strandat 1839.291 kb on + strandat 1839.291 kb on + strandat 1839.292 kb on - strandat 1839.365 kb on + strand, within OLJFJH_08950at 1839.384 kb on - strand, within OLJFJH_08950at 1839.405 kb on - strand, within OLJFJH_08950at 1839.405 kb on - strand, within OLJFJH_08950at 1839.481 kb on + strand, within OLJFJH_08950at 1839.799 kb on + strandat 1839.808 kb on + strandat 1839.808 kb on + strandat 1839.808 kb on + strandat 1839.809 kb on - strandat 1839.812 kb on + strandat 1839.812 kb on + strandat 1839.812 kb on + strandat 1839.813 kb on - strandat 1839.813 kb on - strandat 1839.813 kb on - strandat 1839.815 kb on + strandat 1839.872 kb on + strand, within OLJFJH_08955at 1839.873 kb on - strand, within OLJFJH_08955at 1839.873 kb on - strand, within OLJFJH_08955at 1840.049 kb on - strand, within OLJFJH_08955at 1840.073 kb on + strand, within OLJFJH_08955

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:PBS;Temp:17;Samp:24-7
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1,835,335 + OLJFJH_08940 0.23 -0.4
1,835,336 - OLJFJH_08940 0.24 -0.1
1,835,452 + OLJFJH_08940 0.35 -2.3
1,835,532 + OLJFJH_08940 0.42 +1.2
1,835,532 + OLJFJH_08940 0.42 -0.1
1,835,533 - OLJFJH_08940 0.42 +0.2
1,835,533 - OLJFJH_08940 0.42 -0.4
1,835,557 + OLJFJH_08940 0.45 +0.2
1,835,557 + OLJFJH_08940 0.45 +0.4
1,835,557 + OLJFJH_08940 0.45 +0.2
1,835,557 + OLJFJH_08940 0.45 -0.1
1,835,557 + OLJFJH_08940 0.45 -0.4
1,835,558 - OLJFJH_08940 0.45 -0.4
1,835,694 + OLJFJH_08940 0.58 -0.4
1,835,695 - OLJFJH_08940 0.58 -0.2
1,835,695 - OLJFJH_08940 0.58 +1.6
1,835,918 - OLJFJH_08940 0.79 -0.1
1,836,038 - -0.2
1,836,083 + +0.0
1,836,179 - -0.3
1,836,223 + +0.2
1,836,544 + OLJFJH_08945 0.13 +0.3
1,836,770 + OLJFJH_08945 0.20 +0.2
1,836,770 + OLJFJH_08945 0.20 -0.1
1,836,770 + OLJFJH_08945 0.20 +0.9
1,836,770 + OLJFJH_08945 0.20 +0.9
1,836,771 - OLJFJH_08945 0.20 +2.2
1,836,847 + OLJFJH_08945 0.23 +0.4
1,836,857 + OLJFJH_08945 0.23 -0.3
1,836,857 + OLJFJH_08945 0.23 -1.0
1,836,858 - OLJFJH_08945 0.23 +0.1
1,836,858 - OLJFJH_08945 0.23 -0.3
1,836,865 - OLJFJH_08945 0.23 +0.9
1,837,325 + OLJFJH_08945 0.38 -0.4
1,837,484 + OLJFJH_08945 0.44 -0.4
1,837,746 + OLJFJH_08945 0.52 -1.0
1,837,747 - OLJFJH_08945 0.52 +1.8
1,837,748 + OLJFJH_08945 0.52 -0.8
1,837,748 + OLJFJH_08945 0.52 -0.4
1,837,748 + OLJFJH_08945 0.52 -0.1
1,837,748 + OLJFJH_08945 0.52 -1.7
1,837,749 - OLJFJH_08945 0.52 -0.8
1,837,749 - OLJFJH_08945 0.52 +0.4
1,837,749 - OLJFJH_08945 0.52 -1.1
1,837,772 + OLJFJH_08945 0.53 +1.1
1,837,772 + OLJFJH_08945 0.53 +0.7
1,837,772 + OLJFJH_08945 0.53 +1.3
1,837,773 - OLJFJH_08945 0.53 +0.1
1,837,773 - OLJFJH_08945 0.53 -0.1
1,837,773 - OLJFJH_08945 0.53 +0.9
1,837,773 - OLJFJH_08945 0.53 -0.5
1,837,773 - OLJFJH_08945 0.53 -0.1
1,837,773 - OLJFJH_08945 0.53 +0.6
1,837,773 - OLJFJH_08945 0.53 +0.7
1,837,773 - OLJFJH_08945 0.53 +0.8
1,837,776 + OLJFJH_08945 0.53 +1.3
1,837,777 - OLJFJH_08945 0.53 +0.3
1,837,777 - OLJFJH_08945 0.53 +0.5
1,837,855 - OLJFJH_08945 0.56 -0.2
1,838,448 - OLJFJH_08945 0.75 -0.4
1,839,105 + +0.4
1,839,106 - -0.5
1,839,114 + -0.2
1,839,160 + -1.3
1,839,256 - -0.3
1,839,258 - +0.4
1,839,291 + -0.1
1,839,291 + +0.6
1,839,292 - -2.5
1,839,365 + OLJFJH_08950 0.13 -0.7
1,839,384 - OLJFJH_08950 0.18 -0.9
1,839,405 - OLJFJH_08950 0.23 -1.1
1,839,405 - OLJFJH_08950 0.23 +1.0
1,839,481 + OLJFJH_08950 0.40 +0.0
1,839,799 + -0.4
1,839,808 + -0.2
1,839,808 + -0.3
1,839,808 + -0.1
1,839,809 - +0.8
1,839,812 + -0.8
1,839,812 + +1.2
1,839,812 + -0.2
1,839,813 - -0.2
1,839,813 - +0.0
1,839,813 - +0.2
1,839,815 + -0.8
1,839,872 + OLJFJH_08955 0.16 -0.8
1,839,873 - OLJFJH_08955 0.16 -0.4
1,839,873 - OLJFJH_08955 0.16 +0.7
1,840,049 - OLJFJH_08955 0.67 -1.6
1,840,073 + OLJFJH_08955 0.74 -0.5

Or see this region's nucleotide sequence