Strain Fitness in Erwinia amylovora T8 around OLJFJH_04435

Experiment: Matrix:KB soft agar;Phage:PBS;Temp:17;Samp:24-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04430 and OLJFJH_04435 are separated by 493 nucleotidesOLJFJH_04435 and OLJFJH_04440 are separated by 217 nucleotides OLJFJH_04430: OLJFJH_04430 - 3D-(3 5/4)-trihydroxycyclohexane-1 2-dione acylhydrolase (decyclizing), at 854,746 to 856,686 _04430 OLJFJH_04435: OLJFJH_04435 - 5-dehydro-2-deoxygluconokinase, at 857,180 to 859,102 _04435 OLJFJH_04440: OLJFJH_04440 - MurR/RpiR family transcriptional regulator, at 859,320 to 860,171 _04440 Position (kb) 857 858 859 860Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 856.188 kb on + strand, within OLJFJH_04430at 856.189 kb on - strand, within OLJFJH_04430at 856.233 kb on - strand, within OLJFJH_04430at 856.264 kb on - strand, within OLJFJH_04430at 856.273 kb on + strand, within OLJFJH_04430at 856.274 kb on - strand, within OLJFJH_04430at 856.274 kb on - strand, within OLJFJH_04430at 856.274 kb on - strand, within OLJFJH_04430at 856.274 kb on - strand, within OLJFJH_04430at 856.274 kb on - strand, within OLJFJH_04430at 856.395 kb on + strand, within OLJFJH_04430at 856.395 kb on + strand, within OLJFJH_04430at 856.395 kb on + strand, within OLJFJH_04430at 856.396 kb on - strand, within OLJFJH_04430at 856.396 kb on - strand, within OLJFJH_04430at 856.396 kb on - strand, within OLJFJH_04430at 856.396 kb on - strand, within OLJFJH_04430at 856.396 kb on - strand, within OLJFJH_04430at 856.396 kb on - strand, within OLJFJH_04430at 856.396 kb on - strand, within OLJFJH_04430at 856.426 kb on - strand, within OLJFJH_04430at 856.509 kb on - strandat 856.629 kb on - strandat 856.669 kb on + strandat 856.670 kb on - strandat 856.744 kb on - strandat 856.833 kb on + strandat 856.833 kb on + strandat 856.834 kb on - strandat 856.834 kb on - strandat 856.886 kb on + strandat 856.886 kb on + strandat 856.955 kb on + strandat 856.956 kb on - strandat 856.956 kb on - strandat 857.006 kb on - strandat 857.018 kb on + strandat 857.179 kb on + strandat 857.179 kb on + strandat 857.180 kb on - strandat 857.186 kb on - strandat 857.186 kb on - strandat 857.186 kb on - strandat 857.241 kb on - strandat 857.241 kb on - strandat 857.241 kb on - strandat 857.291 kb on + strandat 857.291 kb on + strandat 857.291 kb on + strandat 857.291 kb on + strandat 857.291 kb on + strandat 857.292 kb on - strandat 857.292 kb on - strandat 857.292 kb on - strandat 857.322 kb on - strandat 857.326 kb on + strandat 857.425 kb on + strand, within OLJFJH_04435at 857.425 kb on + strand, within OLJFJH_04435at 857.513 kb on + strand, within OLJFJH_04435at 857.567 kb on + strand, within OLJFJH_04435at 857.567 kb on + strand, within OLJFJH_04435at 857.567 kb on + strand, within OLJFJH_04435at 857.568 kb on - strand, within OLJFJH_04435at 857.568 kb on - strand, within OLJFJH_04435at 857.569 kb on + strand, within OLJFJH_04435at 857.569 kb on + strand, within OLJFJH_04435at 857.655 kb on + strand, within OLJFJH_04435at 857.751 kb on + strand, within OLJFJH_04435at 857.751 kb on + strand, within OLJFJH_04435at 857.752 kb on - strand, within OLJFJH_04435at 857.795 kb on + strand, within OLJFJH_04435at 857.796 kb on - strand, within OLJFJH_04435at 857.796 kb on - strand, within OLJFJH_04435at 857.848 kb on + strand, within OLJFJH_04435at 857.904 kb on + strand, within OLJFJH_04435at 857.904 kb on + strand, within OLJFJH_04435at 857.904 kb on + strand, within OLJFJH_04435at 857.905 kb on - strand, within OLJFJH_04435at 857.905 kb on - strand, within OLJFJH_04435at 857.909 kb on - strand, within OLJFJH_04435at 858.005 kb on - strand, within OLJFJH_04435at 858.031 kb on + strand, within OLJFJH_04435at 858.032 kb on - strand, within OLJFJH_04435at 858.114 kb on + strand, within OLJFJH_04435at 858.114 kb on + strand, within OLJFJH_04435at 858.118 kb on - strand, within OLJFJH_04435at 858.118 kb on - strand, within OLJFJH_04435at 858.271 kb on + strand, within OLJFJH_04435at 858.272 kb on - strand, within OLJFJH_04435at 858.340 kb on + strand, within OLJFJH_04435at 858.341 kb on - strand, within OLJFJH_04435at 858.436 kb on + strand, within OLJFJH_04435at 858.437 kb on - strand, within OLJFJH_04435at 858.437 kb on - strand, within OLJFJH_04435at 858.437 kb on - strand, within OLJFJH_04435at 858.437 kb on - strand, within OLJFJH_04435at 858.600 kb on - strand, within OLJFJH_04435at 858.670 kb on + strand, within OLJFJH_04435at 858.671 kb on - strand, within OLJFJH_04435at 858.673 kb on + strand, within OLJFJH_04435at 858.673 kb on + strand, within OLJFJH_04435at 858.673 kb on + strand, within OLJFJH_04435at 858.674 kb on - strand, within OLJFJH_04435at 858.674 kb on - strand, within OLJFJH_04435at 858.740 kb on + strand, within OLJFJH_04435at 858.740 kb on + strand, within OLJFJH_04435at 858.741 kb on - strand, within OLJFJH_04435at 858.743 kb on + strand, within OLJFJH_04435at 858.767 kb on + strand, within OLJFJH_04435at 858.768 kb on - strand, within OLJFJH_04435at 858.913 kb on + strandat 858.976 kb on + strandat 858.976 kb on + strandat 858.977 kb on - strandat 858.977 kb on - strandat 859.055 kb on + strandat 859.055 kb on + strandat 859.055 kb on + strandat 859.100 kb on + strandat 859.104 kb on + strandat 859.177 kb on + strandat 859.178 kb on - strandat 859.201 kb on - strandat 859.274 kb on + strandat 859.285 kb on - strandat 859.285 kb on - strandat 859.290 kb on - strandat 859.389 kb on - strandat 859.413 kb on + strand, within OLJFJH_04440at 859.414 kb on - strand, within OLJFJH_04440at 859.415 kb on + strand, within OLJFJH_04440at 859.584 kb on + strand, within OLJFJH_04440at 859.584 kb on + strand, within OLJFJH_04440at 859.585 kb on - strand, within OLJFJH_04440at 859.669 kb on + strand, within OLJFJH_04440at 859.669 kb on + strand, within OLJFJH_04440at 859.670 kb on - strand, within OLJFJH_04440at 859.673 kb on + strand, within OLJFJH_04440at 859.674 kb on - strand, within OLJFJH_04440at 859.674 kb on - strand, within OLJFJH_04440at 859.674 kb on - strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.773 kb on + strand, within OLJFJH_04440at 859.774 kb on - strand, within OLJFJH_04440at 859.774 kb on - strand, within OLJFJH_04440at 859.774 kb on - strand, within OLJFJH_04440at 859.813 kb on - strand, within OLJFJH_04440at 859.821 kb on + strand, within OLJFJH_04440at 859.822 kb on - strand, within OLJFJH_04440at 859.822 kb on - strand, within OLJFJH_04440at 859.895 kb on + strand, within OLJFJH_04440at 859.932 kb on + strand, within OLJFJH_04440at 859.999 kb on + strand, within OLJFJH_04440at 860.000 kb on - strand, within OLJFJH_04440

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:PBS;Temp:17;Samp:24-7
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856,188 + OLJFJH_04430 0.74 -0.1
856,189 - OLJFJH_04430 0.74 -0.7
856,233 - OLJFJH_04430 0.77 +0.8
856,264 - OLJFJH_04430 0.78 -0.2
856,273 + OLJFJH_04430 0.79 -0.8
856,274 - OLJFJH_04430 0.79 -0.4
856,274 - OLJFJH_04430 0.79 +0.0
856,274 - OLJFJH_04430 0.79 +1.4
856,274 - OLJFJH_04430 0.79 -0.6
856,274 - OLJFJH_04430 0.79 +0.1
856,395 + OLJFJH_04430 0.85 -0.0
856,395 + OLJFJH_04430 0.85 -1.3
856,395 + OLJFJH_04430 0.85 +0.9
856,396 - OLJFJH_04430 0.85 -0.4
856,396 - OLJFJH_04430 0.85 +1.0
856,396 - OLJFJH_04430 0.85 +0.3
856,396 - OLJFJH_04430 0.85 -0.5
856,396 - OLJFJH_04430 0.85 +0.4
856,396 - OLJFJH_04430 0.85 -0.3
856,396 - OLJFJH_04430 0.85 -0.3
856,426 - OLJFJH_04430 0.87 -0.1
856,509 - -0.5
856,629 - +0.4
856,669 + +0.1
856,670 - -0.3
856,744 - -0.3
856,833 + -0.7
856,833 + +0.6
856,834 - -0.5
856,834 - -0.1
856,886 + -1.5
856,886 + -0.1
856,955 + -0.2
856,956 - +0.8
856,956 - -1.4
857,006 - -0.1
857,018 + -0.4
857,179 + -0.2
857,179 + -0.1
857,180 - +1.2
857,186 - +0.4
857,186 - +0.4
857,186 - -0.2
857,241 - -0.4
857,241 - -0.1
857,241 - -0.1
857,291 + +0.2
857,291 + -0.2
857,291 + +0.5
857,291 + -1.9
857,291 + +0.1
857,292 - -0.1
857,292 - +0.0
857,292 - +0.4
857,322 - -1.2
857,326 + -0.7
857,425 + OLJFJH_04435 0.13 -0.2
857,425 + OLJFJH_04435 0.13 +1.7
857,513 + OLJFJH_04435 0.17 -0.4
857,567 + OLJFJH_04435 0.20 -0.6
857,567 + OLJFJH_04435 0.20 -0.6
857,567 + OLJFJH_04435 0.20 +0.4
857,568 - OLJFJH_04435 0.20 -0.6
857,568 - OLJFJH_04435 0.20 +1.3
857,569 + OLJFJH_04435 0.20 +0.2
857,569 + OLJFJH_04435 0.20 -0.8
857,655 + OLJFJH_04435 0.25 +0.2
857,751 + OLJFJH_04435 0.30 +0.4
857,751 + OLJFJH_04435 0.30 -0.5
857,752 - OLJFJH_04435 0.30 -1.0
857,795 + OLJFJH_04435 0.32 +0.0
857,796 - OLJFJH_04435 0.32 +0.3
857,796 - OLJFJH_04435 0.32 +0.4
857,848 + OLJFJH_04435 0.35 +0.7
857,904 + OLJFJH_04435 0.38 +0.0
857,904 + OLJFJH_04435 0.38 +0.6
857,904 + OLJFJH_04435 0.38 +1.1
857,905 - OLJFJH_04435 0.38 -0.1
857,905 - OLJFJH_04435 0.38 -0.4
857,909 - OLJFJH_04435 0.38 +0.1
858,005 - OLJFJH_04435 0.43 +0.6
858,031 + OLJFJH_04435 0.44 +0.3
858,032 - OLJFJH_04435 0.44 +0.2
858,114 + OLJFJH_04435 0.49 +0.8
858,114 + OLJFJH_04435 0.49 +0.9
858,118 - OLJFJH_04435 0.49 -0.2
858,118 - OLJFJH_04435 0.49 +3.5
858,271 + OLJFJH_04435 0.57 -0.3
858,272 - OLJFJH_04435 0.57 +0.3
858,340 + OLJFJH_04435 0.60 -0.1
858,341 - OLJFJH_04435 0.60 +0.1
858,436 + OLJFJH_04435 0.65 -0.6
858,437 - OLJFJH_04435 0.65 +0.6
858,437 - OLJFJH_04435 0.65 -0.1
858,437 - OLJFJH_04435 0.65 +0.2
858,437 - OLJFJH_04435 0.65 -0.0
858,600 - OLJFJH_04435 0.74 -1.7
858,670 + OLJFJH_04435 0.77 -0.1
858,671 - OLJFJH_04435 0.78 +0.2
858,673 + OLJFJH_04435 0.78 +0.0
858,673 + OLJFJH_04435 0.78 -0.4
858,673 + OLJFJH_04435 0.78 -0.0
858,674 - OLJFJH_04435 0.78 +0.7
858,674 - OLJFJH_04435 0.78 +0.5
858,740 + OLJFJH_04435 0.81 +0.4
858,740 + OLJFJH_04435 0.81 -0.1
858,741 - OLJFJH_04435 0.81 -0.3
858,743 + OLJFJH_04435 0.81 +0.9
858,767 + OLJFJH_04435 0.83 -0.1
858,768 - OLJFJH_04435 0.83 -0.1
858,913 + +1.4
858,976 + +0.6
858,976 + +1.2
858,977 - +0.3
858,977 - -0.3
859,055 + -0.2
859,055 + +0.5
859,055 + +1.9
859,100 + -0.2
859,104 + +1.2
859,177 + +0.5
859,178 - +0.5
859,201 - -0.6
859,274 + +0.1
859,285 - -1.3
859,285 - +0.3
859,290 - +0.7
859,389 - -0.8
859,413 + OLJFJH_04440 0.11 -1.4
859,414 - OLJFJH_04440 0.11 +0.1
859,415 + OLJFJH_04440 0.11 +1.1
859,584 + OLJFJH_04440 0.31 -0.3
859,584 + OLJFJH_04440 0.31 +0.7
859,585 - OLJFJH_04440 0.31 +0.2
859,669 + OLJFJH_04440 0.41 -1.1
859,669 + OLJFJH_04440 0.41 +0.8
859,670 - OLJFJH_04440 0.41 -1.5
859,673 + OLJFJH_04440 0.41 -1.1
859,674 - OLJFJH_04440 0.42 -0.7
859,674 - OLJFJH_04440 0.42 -0.2
859,674 - OLJFJH_04440 0.42 -1.1
859,773 + OLJFJH_04440 0.53 -2.2
859,773 + OLJFJH_04440 0.53 -0.7
859,773 + OLJFJH_04440 0.53 -0.3
859,773 + OLJFJH_04440 0.53 -0.2
859,773 + OLJFJH_04440 0.53 -3.8
859,773 + OLJFJH_04440 0.53 -2.0
859,774 - OLJFJH_04440 0.53 -1.7
859,774 - OLJFJH_04440 0.53 -0.5
859,774 - OLJFJH_04440 0.53 -1.1
859,813 - OLJFJH_04440 0.58 -1.3
859,821 + OLJFJH_04440 0.59 -0.8
859,822 - OLJFJH_04440 0.59 -0.7
859,822 - OLJFJH_04440 0.59 -0.9
859,895 + OLJFJH_04440 0.67 +1.1
859,932 + OLJFJH_04440 0.72 +1.1
859,999 + OLJFJH_04440 0.80 -0.5
860,000 - OLJFJH_04440 0.80 -1.7

Or see this region's nucleotide sequence