Strain Fitness in Erwinia amylovora T8 around OLJFJH_02450

Experiment: Matrix:KB soft agar;Phage:PBS;Temp:17;Samp:24-7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02435 and OLJFJH_02440 are separated by 4 nucleotidesOLJFJH_02440 and OLJFJH_02445 are separated by 5 nucleotidesOLJFJH_02445 and OLJFJH_02450 are separated by 207 nucleotidesOLJFJH_02450 and OLJFJH_02455 are separated by 193 nucleotides OLJFJH_02435: OLJFJH_02435 - 30S ribosomal protein S18, at 436,250 to 436,477 _02435 OLJFJH_02440: OLJFJH_02440 - primosomal replication protein N, at 436,482 to 436,799 _02440 OLJFJH_02445: OLJFJH_02445 - 30S ribosomal protein S6, at 436,805 to 437,200 _02445 OLJFJH_02450: OLJFJH_02450 - esterase, at 437,408 to 438,166 _02450 OLJFJH_02455: OLJFJH_02455 - methyl-accepting chemotaxis protein, at 438,360 to 440,294 _02455 Position (kb) 437 438 439Strain fitness (log2 ratio) -1 0 1 2at 437.435 kb on + strandat 437.436 kb on - strandat 437.436 kb on - strandat 437.488 kb on + strand, within OLJFJH_02450at 437.520 kb on + strand, within OLJFJH_02450at 437.520 kb on + strand, within OLJFJH_02450at 437.520 kb on + strand, within OLJFJH_02450at 437.520 kb on + strand, within OLJFJH_02450at 437.521 kb on - strand, within OLJFJH_02450at 437.521 kb on - strand, within OLJFJH_02450at 437.521 kb on - strand, within OLJFJH_02450at 437.905 kb on + strand, within OLJFJH_02450at 437.977 kb on + strand, within OLJFJH_02450at 438.034 kb on - strand, within OLJFJH_02450at 438.039 kb on + strand, within OLJFJH_02450at 438.039 kb on + strand, within OLJFJH_02450at 438.040 kb on - strand, within OLJFJH_02450at 438.069 kb on + strand, within OLJFJH_02450at 438.070 kb on - strand, within OLJFJH_02450at 438.122 kb on + strandat 438.122 kb on + strandat 438.122 kb on + strandat 438.123 kb on - strandat 438.169 kb on + strandat 438.182 kb on + strandat 438.183 kb on - strandat 438.186 kb on + strandat 438.186 kb on + strandat 438.187 kb on - strandat 438.190 kb on + strandat 438.346 kb on + strandat 438.347 kb on - strandat 438.347 kb on - strandat 438.347 kb on - strandat 438.349 kb on - strandat 438.349 kb on - strandat 438.448 kb on + strandat 438.449 kb on - strandat 438.465 kb on + strandat 438.465 kb on + strandat 438.506 kb on + strandat 438.546 kb on - strandat 438.546 kb on - strandat 438.552 kb on - strandat 438.786 kb on - strand, within OLJFJH_02455at 438.803 kb on + strand, within OLJFJH_02455at 438.918 kb on + strand, within OLJFJH_02455at 438.918 kb on + strand, within OLJFJH_02455at 438.918 kb on + strand, within OLJFJH_02455at 438.919 kb on - strand, within OLJFJH_02455at 438.919 kb on - strand, within OLJFJH_02455at 438.919 kb on - strand, within OLJFJH_02455at 438.919 kb on - strand, within OLJFJH_02455at 438.919 kb on - strand, within OLJFJH_02455at 438.919 kb on - strand, within OLJFJH_02455at 438.921 kb on - strand, within OLJFJH_02455at 438.947 kb on + strand, within OLJFJH_02455at 439.002 kb on + strand, within OLJFJH_02455at 439.003 kb on - strand, within OLJFJH_02455at 439.060 kb on - strand, within OLJFJH_02455at 439.060 kb on - strand, within OLJFJH_02455at 439.068 kb on - strand, within OLJFJH_02455at 439.070 kb on + strand, within OLJFJH_02455at 439.098 kb on + strand, within OLJFJH_02455at 439.099 kb on - strand, within OLJFJH_02455

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:PBS;Temp:17;Samp:24-7
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437,435 + -0.8
437,436 - +0.4
437,436 - +0.3
437,488 + OLJFJH_02450 0.11 +0.7
437,520 + OLJFJH_02450 0.15 +2.5
437,520 + OLJFJH_02450 0.15 -0.4
437,520 + OLJFJH_02450 0.15 -0.7
437,520 + OLJFJH_02450 0.15 -0.5
437,521 - OLJFJH_02450 0.15 +0.1
437,521 - OLJFJH_02450 0.15 +0.1
437,521 - OLJFJH_02450 0.15 +1.2
437,905 + OLJFJH_02450 0.65 -0.1
437,977 + OLJFJH_02450 0.75 +0.4
438,034 - OLJFJH_02450 0.82 +0.0
438,039 + OLJFJH_02450 0.83 -0.6
438,039 + OLJFJH_02450 0.83 -0.0
438,040 - OLJFJH_02450 0.83 -0.2
438,069 + OLJFJH_02450 0.87 +0.1
438,070 - OLJFJH_02450 0.87 +0.6
438,122 + -0.0
438,122 + +0.1
438,122 + +0.4
438,123 - -0.1
438,169 + +0.4
438,182 + -0.6
438,183 - +0.9
438,186 + -0.6
438,186 + +0.4
438,187 - +0.5
438,190 + -0.1
438,346 + +0.1
438,347 - -0.5
438,347 - +0.2
438,347 - -0.6
438,349 - -0.4
438,349 - +0.3
438,448 + +0.3
438,449 - -0.9
438,465 + -0.5
438,465 + -0.2
438,506 + +0.7
438,546 - -0.8
438,546 - +0.2
438,552 - -0.7
438,786 - OLJFJH_02455 0.22 +0.1
438,803 + OLJFJH_02455 0.23 -0.2
438,918 + OLJFJH_02455 0.29 -0.3
438,918 + OLJFJH_02455 0.29 +0.2
438,918 + OLJFJH_02455 0.29 -0.2
438,919 - OLJFJH_02455 0.29 -0.5
438,919 - OLJFJH_02455 0.29 +0.6
438,919 - OLJFJH_02455 0.29 +0.3
438,919 - OLJFJH_02455 0.29 -0.2
438,919 - OLJFJH_02455 0.29 -0.3
438,919 - OLJFJH_02455 0.29 +0.3
438,921 - OLJFJH_02455 0.29 -1.4
438,947 + OLJFJH_02455 0.30 -0.6
439,002 + OLJFJH_02455 0.33 +0.1
439,003 - OLJFJH_02455 0.33 -0.5
439,060 - OLJFJH_02455 0.36 -0.2
439,060 - OLJFJH_02455 0.36 +0.4
439,068 - OLJFJH_02455 0.37 +0.1
439,070 + OLJFJH_02455 0.37 +0.3
439,098 + OLJFJH_02455 0.38 -0.1
439,099 - OLJFJH_02455 0.38 +0.0

Or see this region's nucleotide sequence