Strain Fitness in Erwinia amylovora T8 around OLJFJH_04890

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_04885 and OLJFJH_04890 are separated by 428 nucleotidesOLJFJH_04890 and OLJFJH_04895 are separated by 308 nucleotidesOLJFJH_04895 and OLJFJH_04900 are separated by 98 nucleotides OLJFJH_04885: OLJFJH_04885 - hypothetical protein, at 967,624 to 968,082 _04885 OLJFJH_04890: OLJFJH_04890 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 968,511 to 970,178 _04890 OLJFJH_04895: OLJFJH_04895 - organic hydroperoxide resistance protein, at 970,487 to 970,915 _04895 OLJFJH_04900: OLJFJH_04900 - MarR family transcriptional regulator, at 971,014 to 971,481 _04900 Position (kb) 968 969 970 971Strain fitness (log2 ratio) -2 -1 0 1 2 3at 967.571 kb on + strandat 967.571 kb on + strandat 967.572 kb on - strandat 967.764 kb on + strand, within OLJFJH_04885at 967.866 kb on + strand, within OLJFJH_04885at 967.869 kb on - strand, within OLJFJH_04885at 967.912 kb on + strand, within OLJFJH_04885at 967.996 kb on + strand, within OLJFJH_04885at 967.997 kb on - strand, within OLJFJH_04885at 967.997 kb on - strand, within OLJFJH_04885at 967.997 kb on - strand, within OLJFJH_04885at 968.057 kb on - strandat 968.134 kb on - strandat 968.377 kb on + strandat 968.416 kb on + strandat 968.417 kb on - strandat 968.531 kb on + strandat 968.531 kb on + strandat 968.534 kb on + strandat 968.534 kb on + strandat 968.535 kb on - strandat 968.545 kb on - strandat 968.640 kb on + strandat 968.641 kb on - strandat 968.641 kb on - strandat 968.660 kb on + strandat 968.660 kb on + strandat 968.680 kb on + strand, within OLJFJH_04890at 968.680 kb on + strand, within OLJFJH_04890at 968.680 kb on + strand, within OLJFJH_04890at 968.680 kb on + strand, within OLJFJH_04890at 968.680 kb on + strand, within OLJFJH_04890at 968.680 kb on + strand, within OLJFJH_04890at 968.681 kb on - strand, within OLJFJH_04890at 968.681 kb on - strand, within OLJFJH_04890at 968.681 kb on - strand, within OLJFJH_04890at 968.701 kb on - strand, within OLJFJH_04890at 968.736 kb on - strand, within OLJFJH_04890at 968.763 kb on - strand, within OLJFJH_04890at 968.860 kb on + strand, within OLJFJH_04890at 968.879 kb on - strand, within OLJFJH_04890at 968.925 kb on - strand, within OLJFJH_04890at 968.977 kb on + strand, within OLJFJH_04890at 968.978 kb on - strand, within OLJFJH_04890at 968.978 kb on - strand, within OLJFJH_04890at 969.000 kb on + strand, within OLJFJH_04890at 969.066 kb on - strand, within OLJFJH_04890at 969.089 kb on + strand, within OLJFJH_04890at 969.089 kb on + strand, within OLJFJH_04890at 969.089 kb on + strand, within OLJFJH_04890at 969.089 kb on + strand, within OLJFJH_04890at 969.090 kb on - strand, within OLJFJH_04890at 969.188 kb on + strand, within OLJFJH_04890at 969.188 kb on + strand, within OLJFJH_04890at 969.188 kb on + strand, within OLJFJH_04890at 969.433 kb on + strand, within OLJFJH_04890at 969.433 kb on + strand, within OLJFJH_04890at 969.433 kb on + strand, within OLJFJH_04890at 969.433 kb on + strand, within OLJFJH_04890at 969.433 kb on + strand, within OLJFJH_04890at 969.433 kb on + strand, within OLJFJH_04890at 969.434 kb on - strand, within OLJFJH_04890at 969.434 kb on - strand, within OLJFJH_04890at 969.434 kb on - strand, within OLJFJH_04890at 969.437 kb on + strand, within OLJFJH_04890at 969.437 kb on + strand, within OLJFJH_04890at 969.444 kb on + strand, within OLJFJH_04890at 969.464 kb on - strand, within OLJFJH_04890at 969.507 kb on - strand, within OLJFJH_04890at 969.517 kb on + strand, within OLJFJH_04890at 969.526 kb on + strand, within OLJFJH_04890at 969.527 kb on - strand, within OLJFJH_04890at 969.568 kb on + strand, within OLJFJH_04890at 969.569 kb on - strand, within OLJFJH_04890at 969.569 kb on - strand, within OLJFJH_04890at 969.612 kb on - strand, within OLJFJH_04890at 969.612 kb on - strand, within OLJFJH_04890at 969.612 kb on - strand, within OLJFJH_04890at 969.772 kb on - strand, within OLJFJH_04890at 969.907 kb on + strand, within OLJFJH_04890at 969.907 kb on + strand, within OLJFJH_04890at 969.907 kb on + strand, within OLJFJH_04890at 969.907 kb on + strand, within OLJFJH_04890at 969.907 kb on + strand, within OLJFJH_04890at 969.907 kb on + strand, within OLJFJH_04890at 969.907 kb on + strand, within OLJFJH_04890at 969.907 kb on + strand, within OLJFJH_04890at 969.907 kb on + strand, within OLJFJH_04890at 969.908 kb on - strand, within OLJFJH_04890at 969.908 kb on - strand, within OLJFJH_04890at 969.908 kb on - strand, within OLJFJH_04890at 969.908 kb on - strand, within OLJFJH_04890at 969.911 kb on - strand, within OLJFJH_04890at 970.090 kb on + strandat 970.123 kb on + strandat 970.124 kb on - strandat 970.124 kb on - strandat 970.186 kb on + strandat 970.186 kb on + strandat 970.248 kb on + strandat 970.249 kb on - strandat 970.294 kb on + strandat 970.347 kb on + strandat 970.351 kb on + strandat 970.357 kb on + strandat 970.357 kb on + strandat 970.358 kb on - strandat 970.358 kb on - strandat 970.358 kb on - strandat 970.358 kb on - strandat 970.413 kb on - strandat 970.437 kb on - strandat 970.472 kb on + strandat 970.472 kb on + strandat 970.472 kb on + strandat 970.472 kb on + strandat 970.488 kb on + strandat 970.488 kb on + strandat 970.488 kb on + strandat 970.489 kb on - strandat 970.489 kb on - strandat 970.535 kb on - strand, within OLJFJH_04895at 970.535 kb on - strand, within OLJFJH_04895at 970.552 kb on + strand, within OLJFJH_04895at 970.812 kb on - strand, within OLJFJH_04895at 970.891 kb on + strandat 970.915 kb on + strandat 970.915 kb on + strandat 970.915 kb on + strandat 970.916 kb on - strandat 970.980 kb on + strandat 970.980 kb on + strandat 970.985 kb on - strandat 970.985 kb on - strandat 970.988 kb on + strandat 970.988 kb on + strandat 970.994 kb on - strandat 971.022 kb on + strandat 971.022 kb on + strandat 971.036 kb on - strandat 971.036 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-9
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967,571 + -0.5
967,571 + +0.1
967,572 - -0.9
967,764 + OLJFJH_04885 0.31 -0.6
967,866 + OLJFJH_04885 0.53 +0.1
967,869 - OLJFJH_04885 0.53 +0.4
967,912 + OLJFJH_04885 0.63 -0.2
967,996 + OLJFJH_04885 0.81 +0.1
967,997 - OLJFJH_04885 0.81 +0.9
967,997 - OLJFJH_04885 0.81 -1.1
967,997 - OLJFJH_04885 0.81 +0.2
968,057 - +0.7
968,134 - -2.1
968,377 + -0.5
968,416 + +0.2
968,417 - +2.1
968,531 + -0.3
968,531 + +0.0
968,534 + -0.2
968,534 + -0.9
968,535 - -1.8
968,545 - -0.1
968,640 + -0.1
968,641 - +1.0
968,641 - +0.5
968,660 + -0.0
968,660 + +1.1
968,680 + OLJFJH_04890 0.10 -1.3
968,680 + OLJFJH_04890 0.10 -0.5
968,680 + OLJFJH_04890 0.10 -0.2
968,680 + OLJFJH_04890 0.10 -0.4
968,680 + OLJFJH_04890 0.10 -0.7
968,680 + OLJFJH_04890 0.10 +0.6
968,681 - OLJFJH_04890 0.10 +0.5
968,681 - OLJFJH_04890 0.10 -0.1
968,681 - OLJFJH_04890 0.10 -0.1
968,701 - OLJFJH_04890 0.11 -0.3
968,736 - OLJFJH_04890 0.13 -0.3
968,763 - OLJFJH_04890 0.15 -2.4
968,860 + OLJFJH_04890 0.21 -0.3
968,879 - OLJFJH_04890 0.22 +0.1
968,925 - OLJFJH_04890 0.25 +1.3
968,977 + OLJFJH_04890 0.28 -0.6
968,978 - OLJFJH_04890 0.28 -0.0
968,978 - OLJFJH_04890 0.28 -0.8
969,000 + OLJFJH_04890 0.29 -1.2
969,066 - OLJFJH_04890 0.33 -0.1
969,089 + OLJFJH_04890 0.35 -0.8
969,089 + OLJFJH_04890 0.35 -0.5
969,089 + OLJFJH_04890 0.35 -0.3
969,089 + OLJFJH_04890 0.35 -0.1
969,090 - OLJFJH_04890 0.35 -0.4
969,188 + OLJFJH_04890 0.41 -0.5
969,188 + OLJFJH_04890 0.41 -0.1
969,188 + OLJFJH_04890 0.41 -0.6
969,433 + OLJFJH_04890 0.55 -0.6
969,433 + OLJFJH_04890 0.55 -0.2
969,433 + OLJFJH_04890 0.55 +0.1
969,433 + OLJFJH_04890 0.55 -0.4
969,433 + OLJFJH_04890 0.55 -1.0
969,433 + OLJFJH_04890 0.55 +0.1
969,434 - OLJFJH_04890 0.55 +0.2
969,434 - OLJFJH_04890 0.55 +1.4
969,434 - OLJFJH_04890 0.55 -0.6
969,437 + OLJFJH_04890 0.56 -1.3
969,437 + OLJFJH_04890 0.56 +0.0
969,444 + OLJFJH_04890 0.56 +0.4
969,464 - OLJFJH_04890 0.57 +0.3
969,507 - OLJFJH_04890 0.60 +0.2
969,517 + OLJFJH_04890 0.60 -0.2
969,526 + OLJFJH_04890 0.61 -0.5
969,527 - OLJFJH_04890 0.61 +0.2
969,568 + OLJFJH_04890 0.63 -0.3
969,569 - OLJFJH_04890 0.63 +0.3
969,569 - OLJFJH_04890 0.63 +1.3
969,612 - OLJFJH_04890 0.66 -1.7
969,612 - OLJFJH_04890 0.66 +0.9
969,612 - OLJFJH_04890 0.66 -0.2
969,772 - OLJFJH_04890 0.76 -0.3
969,907 + OLJFJH_04890 0.84 +0.7
969,907 + OLJFJH_04890 0.84 -0.4
969,907 + OLJFJH_04890 0.84 -0.2
969,907 + OLJFJH_04890 0.84 -0.8
969,907 + OLJFJH_04890 0.84 -0.0
969,907 + OLJFJH_04890 0.84 -0.3
969,907 + OLJFJH_04890 0.84 -0.5
969,907 + OLJFJH_04890 0.84 -0.6
969,907 + OLJFJH_04890 0.84 -1.0
969,908 - OLJFJH_04890 0.84 +0.4
969,908 - OLJFJH_04890 0.84 -0.3
969,908 - OLJFJH_04890 0.84 +0.4
969,908 - OLJFJH_04890 0.84 -0.4
969,911 - OLJFJH_04890 0.84 -2.5
970,090 + -0.5
970,123 + -1.1
970,124 - -0.6
970,124 - -1.8
970,186 + -0.5
970,186 + +0.8
970,248 + -0.8
970,249 - +2.8
970,294 + +1.3
970,347 + +0.5
970,351 + +0.4
970,357 + +0.4
970,357 + -1.0
970,358 - +1.6
970,358 - -2.0
970,358 - -1.8
970,358 - -0.0
970,413 - +0.8
970,437 - -0.3
970,472 + -0.5
970,472 + -1.0
970,472 + +0.6
970,472 + -0.4
970,488 + -0.2
970,488 + +0.5
970,488 + -0.2
970,489 - -0.4
970,489 - -0.5
970,535 - OLJFJH_04895 0.11 -0.1
970,535 - OLJFJH_04895 0.11 -0.3
970,552 + OLJFJH_04895 0.15 -0.3
970,812 - OLJFJH_04895 0.76 +0.7
970,891 + +1.2
970,915 + -0.1
970,915 + +1.3
970,915 + -0.3
970,916 - -1.5
970,980 + -1.2
970,980 + -0.1
970,985 - -0.1
970,985 - -0.7
970,988 + +0.4
970,988 + -1.5
970,994 - +1.6
971,022 + +0.4
971,022 + -0.3
971,036 - +0.3
971,036 - -0.8

Or see this region's nucleotide sequence