Strain Fitness in Erwinia amylovora T8 around OLJFJH_12095

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_12090 and OLJFJH_12095 are separated by 1 nucleotidesOLJFJH_12095 and OLJFJH_12100 are separated by 119 nucleotides OLJFJH_12090: OLJFJH_12090 - dTDP-glucose 4 6-dehydratase, at 2,545,964 to 2,547,040 _12090 OLJFJH_12095: OLJFJH_12095 - glucose-1-phosphate thymidylyltransferase RfbA, at 2,547,042 to 2,547,908 _12095 OLJFJH_12100: OLJFJH_12100 - NAD-dependent dehydratase, at 2,548,028 to 2,548,963 _12100 Position (kb) 2547 2548Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9 10at 2546.046 kb on + strandat 2546.359 kb on + strand, within OLJFJH_12090at 2546.578 kb on - strand, within OLJFJH_12090at 2546.708 kb on - strand, within OLJFJH_12090at 2546.708 kb on - strand, within OLJFJH_12090at 2546.856 kb on + strand, within OLJFJH_12090at 2547.006 kb on + strandat 2547.007 kb on - strandat 2547.018 kb on + strandat 2547.054 kb on - strandat 2547.145 kb on - strand, within OLJFJH_12095at 2547.201 kb on - strand, within OLJFJH_12095at 2547.253 kb on + strand, within OLJFJH_12095at 2547.368 kb on + strand, within OLJFJH_12095at 2547.410 kb on - strand, within OLJFJH_12095at 2547.657 kb on - strand, within OLJFJH_12095at 2548.000 kb on - strandat 2548.537 kb on - strand, within OLJFJH_12100at 2548.651 kb on + strand, within OLJFJH_12100at 2548.717 kb on + strand, within OLJFJH_12100

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-1
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2,546,046 + +5.9
2,546,359 + OLJFJH_12090 0.37 +6.7
2,546,578 - OLJFJH_12090 0.57 +9.6
2,546,708 - OLJFJH_12090 0.69 +8.0
2,546,708 - OLJFJH_12090 0.69 +8.5
2,546,856 + OLJFJH_12090 0.83 +7.5
2,547,006 + +0.3
2,547,007 - +7.9
2,547,018 + -0.3
2,547,054 - +7.7
2,547,145 - OLJFJH_12095 0.12 +7.2
2,547,201 - OLJFJH_12095 0.18 +9.9
2,547,253 + OLJFJH_12095 0.24 +6.8
2,547,368 + OLJFJH_12095 0.38 +7.1
2,547,410 - OLJFJH_12095 0.42 +7.8
2,547,657 - OLJFJH_12095 0.71 +8.4
2,548,000 - +7.7
2,548,537 - OLJFJH_12100 0.54 +7.8
2,548,651 + OLJFJH_12100 0.67 +8.6
2,548,717 + OLJFJH_12100 0.74 +7.8

Or see this region's nucleotide sequence