Strain Fitness in Erwinia amylovora T8 around OLJFJH_08830

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_08825 and OLJFJH_08830 are separated by 509 nucleotidesOLJFJH_08830 and OLJFJH_08835 are separated by 387 nucleotides OLJFJH_08825: OLJFJH_08825 - EamA family transporter, at 1,806,604 to 1,807,557 _08825 OLJFJH_08830: OLJFJH_08830 - type III effector, at 1,808,067 to 1,809,746 _08830 OLJFJH_08835: OLJFJH_08835 - site-specific tyrosine recombinase XerD, at 1,810,134 to 1,811,027 _08835 Position (kb) 1808 1809 1810Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1807.114 kb on + strand, within OLJFJH_08825at 1807.184 kb on - strand, within OLJFJH_08825at 1807.189 kb on - strand, within OLJFJH_08825at 1807.302 kb on + strand, within OLJFJH_08825at 1807.322 kb on + strand, within OLJFJH_08825at 1807.322 kb on + strand, within OLJFJH_08825at 1807.322 kb on + strand, within OLJFJH_08825at 1807.323 kb on - strand, within OLJFJH_08825at 1807.323 kb on - strand, within OLJFJH_08825at 1807.323 kb on - strand, within OLJFJH_08825at 1807.325 kb on + strand, within OLJFJH_08825at 1807.420 kb on + strand, within OLJFJH_08825at 1807.420 kb on + strand, within OLJFJH_08825at 1807.634 kb on - strandat 1807.647 kb on - strandat 1807.679 kb on + strandat 1807.680 kb on - strandat 1807.680 kb on - strandat 1807.760 kb on + strandat 1807.760 kb on + strandat 1807.761 kb on - strandat 1807.761 kb on - strandat 1807.778 kb on - strandat 1807.813 kb on - strandat 1807.854 kb on - strandat 1807.854 kb on - strandat 1807.958 kb on + strandat 1808.068 kb on + strandat 1808.068 kb on + strandat 1808.069 kb on - strandat 1808.069 kb on - strandat 1808.175 kb on + strandat 1808.176 kb on - strandat 1808.176 kb on - strandat 1808.224 kb on + strandat 1808.284 kb on + strand, within OLJFJH_08830at 1808.284 kb on + strand, within OLJFJH_08830at 1808.338 kb on + strand, within OLJFJH_08830at 1808.338 kb on + strand, within OLJFJH_08830at 1808.338 kb on + strand, within OLJFJH_08830at 1808.338 kb on + strand, within OLJFJH_08830at 1808.338 kb on + strand, within OLJFJH_08830at 1808.339 kb on - strand, within OLJFJH_08830at 1808.339 kb on - strand, within OLJFJH_08830at 1808.339 kb on - strand, within OLJFJH_08830at 1808.355 kb on - strand, within OLJFJH_08830at 1808.359 kb on + strand, within OLJFJH_08830at 1808.360 kb on - strand, within OLJFJH_08830at 1808.506 kb on + strand, within OLJFJH_08830at 1808.507 kb on - strand, within OLJFJH_08830at 1808.507 kb on - strand, within OLJFJH_08830at 1808.513 kb on + strand, within OLJFJH_08830at 1808.566 kb on + strand, within OLJFJH_08830at 1808.566 kb on + strand, within OLJFJH_08830at 1808.566 kb on + strand, within OLJFJH_08830at 1808.566 kb on + strand, within OLJFJH_08830at 1808.567 kb on - strand, within OLJFJH_08830at 1808.567 kb on - strand, within OLJFJH_08830at 1808.567 kb on - strand, within OLJFJH_08830at 1808.567 kb on - strand, within OLJFJH_08830at 1808.571 kb on + strand, within OLJFJH_08830at 1808.576 kb on + strand, within OLJFJH_08830at 1808.577 kb on - strand, within OLJFJH_08830at 1808.618 kb on + strand, within OLJFJH_08830at 1808.619 kb on - strand, within OLJFJH_08830at 1808.619 kb on - strand, within OLJFJH_08830at 1808.619 kb on - strand, within OLJFJH_08830at 1808.655 kb on - strand, within OLJFJH_08830at 1808.655 kb on - strand, within OLJFJH_08830at 1808.752 kb on + strand, within OLJFJH_08830at 1808.752 kb on + strand, within OLJFJH_08830at 1808.752 kb on + strand, within OLJFJH_08830at 1808.753 kb on - strand, within OLJFJH_08830at 1808.753 kb on - strand, within OLJFJH_08830at 1808.756 kb on + strand, within OLJFJH_08830at 1808.756 kb on + strand, within OLJFJH_08830at 1808.756 kb on + strand, within OLJFJH_08830at 1808.756 kb on + strand, within OLJFJH_08830at 1808.757 kb on - strand, within OLJFJH_08830at 1808.757 kb on - strand, within OLJFJH_08830at 1808.757 kb on - strand, within OLJFJH_08830at 1808.757 kb on - strand, within OLJFJH_08830at 1808.757 kb on - strand, within OLJFJH_08830at 1808.760 kb on - strand, within OLJFJH_08830at 1808.814 kb on - strand, within OLJFJH_08830at 1808.957 kb on + strand, within OLJFJH_08830at 1808.958 kb on + strand, within OLJFJH_08830at 1809.114 kb on + strand, within OLJFJH_08830at 1809.114 kb on + strand, within OLJFJH_08830at 1809.115 kb on - strand, within OLJFJH_08830at 1809.115 kb on - strand, within OLJFJH_08830at 1809.151 kb on - strand, within OLJFJH_08830at 1809.151 kb on - strand, within OLJFJH_08830at 1809.182 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.191 kb on + strand, within OLJFJH_08830at 1809.192 kb on - strand, within OLJFJH_08830at 1809.192 kb on - strand, within OLJFJH_08830at 1809.192 kb on - strand, within OLJFJH_08830at 1809.192 kb on - strand, within OLJFJH_08830at 1809.262 kb on + strand, within OLJFJH_08830at 1809.263 kb on - strand, within OLJFJH_08830at 1809.275 kb on + strand, within OLJFJH_08830at 1809.276 kb on - strand, within OLJFJH_08830at 1809.321 kb on - strand, within OLJFJH_08830at 1809.707 kb on - strandat 1809.738 kb on + strandat 1809.739 kb on - strandat 1809.741 kb on - strandat 1809.749 kb on + strandat 1809.749 kb on + strandat 1809.792 kb on + strandat 1809.792 kb on + strandat 1809.793 kb on - strandat 1809.793 kb on - strandat 1809.922 kb on - strandat 1809.959 kb on + strandat 1809.988 kb on - strandat 1810.014 kb on - strandat 1810.016 kb on + strandat 1810.016 kb on + strandat 1810.017 kb on - strandat 1810.023 kb on - strandat 1810.049 kb on + strandat 1810.050 kb on - strandat 1810.058 kb on - strandat 1810.064 kb on - strandat 1810.066 kb on + strandat 1810.068 kb on + strandat 1810.286 kb on - strand, within OLJFJH_08835at 1810.331 kb on + strand, within OLJFJH_08835at 1810.483 kb on + strand, within OLJFJH_08835at 1810.706 kb on + strand, within OLJFJH_08835at 1810.707 kb on - strand, within OLJFJH_08835

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-1
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1,807,114 + OLJFJH_08825 0.53 -0.3
1,807,184 - OLJFJH_08825 0.61 +0.9
1,807,189 - OLJFJH_08825 0.61 +0.3
1,807,302 + OLJFJH_08825 0.73 +1.2
1,807,322 + OLJFJH_08825 0.75 +0.0
1,807,322 + OLJFJH_08825 0.75 -0.2
1,807,322 + OLJFJH_08825 0.75 -0.3
1,807,323 - OLJFJH_08825 0.75 +0.7
1,807,323 - OLJFJH_08825 0.75 -1.3
1,807,323 - OLJFJH_08825 0.75 -0.7
1,807,325 + OLJFJH_08825 0.76 +0.9
1,807,420 + OLJFJH_08825 0.86 +0.1
1,807,420 + OLJFJH_08825 0.86 +0.4
1,807,634 - +0.0
1,807,647 - +0.0
1,807,679 + +0.0
1,807,680 - -0.9
1,807,680 - +0.2
1,807,760 + +0.0
1,807,760 + +0.1
1,807,761 - -0.9
1,807,761 - -0.2
1,807,778 - +0.1
1,807,813 - +0.8
1,807,854 - +0.0
1,807,854 - +2.2
1,807,958 + -0.2
1,808,068 + +0.9
1,808,068 + +1.0
1,808,069 - -0.4
1,808,069 - +0.0
1,808,175 + -0.5
1,808,176 - +0.4
1,808,176 - -2.8
1,808,224 + +0.6
1,808,284 + OLJFJH_08830 0.13 +0.8
1,808,284 + OLJFJH_08830 0.13 -1.3
1,808,338 + OLJFJH_08830 0.16 +2.5
1,808,338 + OLJFJH_08830 0.16 +0.3
1,808,338 + OLJFJH_08830 0.16 +0.6
1,808,338 + OLJFJH_08830 0.16 -1.9
1,808,338 + OLJFJH_08830 0.16 -0.0
1,808,339 - OLJFJH_08830 0.16 +0.1
1,808,339 - OLJFJH_08830 0.16 +0.2
1,808,339 - OLJFJH_08830 0.16 -0.6
1,808,355 - OLJFJH_08830 0.17 -0.5
1,808,359 + OLJFJH_08830 0.17 +0.2
1,808,360 - OLJFJH_08830 0.17 -0.3
1,808,506 + OLJFJH_08830 0.26 -0.1
1,808,507 - OLJFJH_08830 0.26 -0.1
1,808,507 - OLJFJH_08830 0.26 +0.2
1,808,513 + OLJFJH_08830 0.27 +0.0
1,808,566 + OLJFJH_08830 0.30 -0.4
1,808,566 + OLJFJH_08830 0.30 +0.1
1,808,566 + OLJFJH_08830 0.30 +0.1
1,808,566 + OLJFJH_08830 0.30 -1.9
1,808,567 - OLJFJH_08830 0.30 +0.4
1,808,567 - OLJFJH_08830 0.30 +0.0
1,808,567 - OLJFJH_08830 0.30 -0.4
1,808,567 - OLJFJH_08830 0.30 -0.1
1,808,571 + OLJFJH_08830 0.30 +0.0
1,808,576 + OLJFJH_08830 0.30 +0.5
1,808,577 - OLJFJH_08830 0.30 +0.0
1,808,618 + OLJFJH_08830 0.33 -0.3
1,808,619 - OLJFJH_08830 0.33 -1.1
1,808,619 - OLJFJH_08830 0.33 +1.4
1,808,619 - OLJFJH_08830 0.33 -0.5
1,808,655 - OLJFJH_08830 0.35 +2.3
1,808,655 - OLJFJH_08830 0.35 +1.6
1,808,752 + OLJFJH_08830 0.41 -0.1
1,808,752 + OLJFJH_08830 0.41 -0.2
1,808,752 + OLJFJH_08830 0.41 +0.2
1,808,753 - OLJFJH_08830 0.41 -0.3
1,808,753 - OLJFJH_08830 0.41 +0.6
1,808,756 + OLJFJH_08830 0.41 +0.7
1,808,756 + OLJFJH_08830 0.41 +1.4
1,808,756 + OLJFJH_08830 0.41 +0.1
1,808,756 + OLJFJH_08830 0.41 +0.8
1,808,757 - OLJFJH_08830 0.41 -0.0
1,808,757 - OLJFJH_08830 0.41 +0.5
1,808,757 - OLJFJH_08830 0.41 -0.7
1,808,757 - OLJFJH_08830 0.41 +0.3
1,808,757 - OLJFJH_08830 0.41 +0.0
1,808,760 - OLJFJH_08830 0.41 -0.1
1,808,814 - OLJFJH_08830 0.44 +0.9
1,808,957 + OLJFJH_08830 0.53 -0.4
1,808,958 + OLJFJH_08830 0.53 -1.6
1,809,114 + OLJFJH_08830 0.62 -0.2
1,809,114 + OLJFJH_08830 0.62 -0.6
1,809,115 - OLJFJH_08830 0.62 +0.1
1,809,115 - OLJFJH_08830 0.62 +0.1
1,809,151 - OLJFJH_08830 0.65 +0.4
1,809,151 - OLJFJH_08830 0.65 +0.5
1,809,182 + OLJFJH_08830 0.66 +0.0
1,809,191 + OLJFJH_08830 0.67 +0.8
1,809,191 + OLJFJH_08830 0.67 +0.1
1,809,191 + OLJFJH_08830 0.67 -0.3
1,809,191 + OLJFJH_08830 0.67 +0.7
1,809,191 + OLJFJH_08830 0.67 -0.7
1,809,191 + OLJFJH_08830 0.67 +0.7
1,809,191 + OLJFJH_08830 0.67 -0.5
1,809,191 + OLJFJH_08830 0.67 -1.1
1,809,192 - OLJFJH_08830 0.67 -0.1
1,809,192 - OLJFJH_08830 0.67 +0.0
1,809,192 - OLJFJH_08830 0.67 +1.1
1,809,192 - OLJFJH_08830 0.67 -1.0
1,809,262 + OLJFJH_08830 0.71 +0.2
1,809,263 - OLJFJH_08830 0.71 -1.8
1,809,275 + OLJFJH_08830 0.72 -0.0
1,809,276 - OLJFJH_08830 0.72 +0.6
1,809,321 - OLJFJH_08830 0.75 -0.2
1,809,707 - -0.1
1,809,738 + +0.6
1,809,739 - -0.7
1,809,741 - -0.1
1,809,749 + -0.4
1,809,749 + -0.0
1,809,792 + +0.2
1,809,792 + -0.7
1,809,793 - -0.5
1,809,793 - -0.1
1,809,922 - -0.5
1,809,959 + +0.5
1,809,988 - -1.4
1,810,014 - -0.4
1,810,016 + -0.2
1,810,016 + +0.2
1,810,017 - +1.2
1,810,023 - -0.2
1,810,049 + -0.4
1,810,050 - -0.7
1,810,058 - -0.7
1,810,064 - -0.4
1,810,066 + -0.1
1,810,068 + +0.3
1,810,286 - OLJFJH_08835 0.17 -0.4
1,810,331 + OLJFJH_08835 0.22 -0.8
1,810,483 + OLJFJH_08835 0.39 -1.2
1,810,706 + OLJFJH_08835 0.64 -0.8
1,810,707 - OLJFJH_08835 0.64 -1.0

Or see this region's nucleotide sequence