Strain Fitness in Erwinia amylovora T8 around OLJFJH_03215

Experiment: Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03210 and OLJFJH_03215 are separated by 89 nucleotidesOLJFJH_03215 and OLJFJH_03220 are separated by 15 nucleotides OLJFJH_03210: OLJFJH_03210 - sugar dehydrogenase, at 599,825 to 600,613 _03210 OLJFJH_03215: OLJFJH_03215 - transcriptional regulator, at 600,703 to 601,017 _03215 OLJFJH_03220: OLJFJH_03220 - alkene reductase, at 601,033 to 602,157 _03220 Position (kb) 600 601 602Strain fitness (log2 ratio) -2 -1 0 1 2at 599.760 kb on + strandat 599.784 kb on + strandat 599.821 kb on + strandat 599.824 kb on + strandat 599.824 kb on + strandat 599.824 kb on + strandat 599.824 kb on + strandat 599.825 kb on - strandat 599.825 kb on - strandat 599.825 kb on - strandat 599.825 kb on - strandat 599.829 kb on - strandat 599.829 kb on - strandat 599.829 kb on - strandat 599.936 kb on + strand, within OLJFJH_03210at 599.936 kb on + strand, within OLJFJH_03210at 599.937 kb on - strand, within OLJFJH_03210at 600.010 kb on - strand, within OLJFJH_03210at 600.010 kb on - strand, within OLJFJH_03210at 600.097 kb on + strand, within OLJFJH_03210at 600.097 kb on + strand, within OLJFJH_03210at 600.101 kb on - strand, within OLJFJH_03210at 600.185 kb on + strand, within OLJFJH_03210at 600.215 kb on + strand, within OLJFJH_03210at 600.244 kb on + strand, within OLJFJH_03210at 600.264 kb on + strand, within OLJFJH_03210at 600.274 kb on + strand, within OLJFJH_03210at 600.299 kb on + strand, within OLJFJH_03210at 600.454 kb on - strand, within OLJFJH_03210at 600.615 kb on - strandat 600.615 kb on - strandat 600.773 kb on + strand, within OLJFJH_03215at 600.773 kb on + strand, within OLJFJH_03215at 600.773 kb on + strand, within OLJFJH_03215at 600.773 kb on + strand, within OLJFJH_03215at 600.774 kb on - strand, within OLJFJH_03215at 600.774 kb on - strand, within OLJFJH_03215at 600.774 kb on - strand, within OLJFJH_03215at 600.818 kb on + strand, within OLJFJH_03215at 600.819 kb on - strand, within OLJFJH_03215at 600.829 kb on - strand, within OLJFJH_03215at 600.844 kb on - strand, within OLJFJH_03215at 600.844 kb on - strand, within OLJFJH_03215at 600.844 kb on - strand, within OLJFJH_03215at 600.856 kb on + strand, within OLJFJH_03215at 600.912 kb on - strand, within OLJFJH_03215at 600.913 kb on + strand, within OLJFJH_03215at 600.913 kb on + strand, within OLJFJH_03215at 600.913 kb on + strand, within OLJFJH_03215at 600.913 kb on + strand, within OLJFJH_03215at 600.913 kb on + strand, within OLJFJH_03215at 600.914 kb on - strand, within OLJFJH_03215at 600.914 kb on - strand, within OLJFJH_03215at 600.914 kb on - strand, within OLJFJH_03215at 600.914 kb on - strand, within OLJFJH_03215at 600.914 kb on - strand, within OLJFJH_03215at 600.924 kb on - strand, within OLJFJH_03215at 600.952 kb on - strand, within OLJFJH_03215at 600.992 kb on - strandat 601.060 kb on - strandat 601.060 kb on - strandat 601.226 kb on + strand, within OLJFJH_03220at 601.238 kb on + strand, within OLJFJH_03220at 601.239 kb on - strand, within OLJFJH_03220at 601.239 kb on - strand, within OLJFJH_03220at 601.239 kb on - strand, within OLJFJH_03220at 601.242 kb on + strand, within OLJFJH_03220at 601.375 kb on - strand, within OLJFJH_03220at 601.376 kb on + strand, within OLJFJH_03220at 601.376 kb on + strand, within OLJFJH_03220at 601.376 kb on + strand, within OLJFJH_03220at 601.376 kb on + strand, within OLJFJH_03220at 601.376 kb on + strand, within OLJFJH_03220at 601.376 kb on + strand, within OLJFJH_03220at 601.376 kb on + strand, within OLJFJH_03220at 601.376 kb on + strand, within OLJFJH_03220at 601.376 kb on + strand, within OLJFJH_03220at 601.376 kb on + strand, within OLJFJH_03220at 601.377 kb on - strand, within OLJFJH_03220at 601.377 kb on - strand, within OLJFJH_03220at 601.377 kb on - strand, within OLJFJH_03220at 601.377 kb on - strand, within OLJFJH_03220at 601.413 kb on - strand, within OLJFJH_03220at 601.441 kb on + strand, within OLJFJH_03220at 601.567 kb on - strand, within OLJFJH_03220at 601.567 kb on - strand, within OLJFJH_03220at 601.664 kb on + strand, within OLJFJH_03220at 601.865 kb on - strand, within OLJFJH_03220at 601.995 kb on + strand, within OLJFJH_03220

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:cocktail;Temp:17;Samp:22-1
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599,760 + +0.1
599,784 + -0.1
599,821 + -0.1
599,824 + +1.3
599,824 + +1.7
599,824 + -0.3
599,824 + -0.1
599,825 - +0.1
599,825 - -0.2
599,825 - -0.2
599,825 - +0.1
599,829 - +1.3
599,829 - +0.0
599,829 - +1.2
599,936 + OLJFJH_03210 0.14 +0.1
599,936 + OLJFJH_03210 0.14 -1.1
599,937 - OLJFJH_03210 0.14 -0.9
600,010 - OLJFJH_03210 0.23 +0.7
600,010 - OLJFJH_03210 0.23 +0.7
600,097 + OLJFJH_03210 0.34 -1.1
600,097 + OLJFJH_03210 0.34 -0.0
600,101 - OLJFJH_03210 0.35 -0.2
600,185 + OLJFJH_03210 0.46 -0.8
600,215 + OLJFJH_03210 0.49 +0.1
600,244 + OLJFJH_03210 0.53 +0.1
600,264 + OLJFJH_03210 0.56 +0.9
600,274 + OLJFJH_03210 0.57 +0.0
600,299 + OLJFJH_03210 0.60 +0.2
600,454 - OLJFJH_03210 0.80 -0.9
600,615 - -0.6
600,615 - +0.5
600,773 + OLJFJH_03215 0.22 -0.0
600,773 + OLJFJH_03215 0.22 -0.0
600,773 + OLJFJH_03215 0.22 -0.3
600,773 + OLJFJH_03215 0.22 +0.4
600,774 - OLJFJH_03215 0.23 -0.0
600,774 - OLJFJH_03215 0.23 -0.9
600,774 - OLJFJH_03215 0.23 -0.0
600,818 + OLJFJH_03215 0.37 -0.2
600,819 - OLJFJH_03215 0.37 -0.5
600,829 - OLJFJH_03215 0.40 -1.6
600,844 - OLJFJH_03215 0.45 +0.1
600,844 - OLJFJH_03215 0.45 -0.5
600,844 - OLJFJH_03215 0.45 -1.0
600,856 + OLJFJH_03215 0.49 +0.4
600,912 - OLJFJH_03215 0.66 -0.5
600,913 + OLJFJH_03215 0.67 -2.0
600,913 + OLJFJH_03215 0.67 -0.6
600,913 + OLJFJH_03215 0.67 +0.1
600,913 + OLJFJH_03215 0.67 +0.2
600,913 + OLJFJH_03215 0.67 -0.5
600,914 - OLJFJH_03215 0.67 -0.4
600,914 - OLJFJH_03215 0.67 -0.6
600,914 - OLJFJH_03215 0.67 -0.0
600,914 - OLJFJH_03215 0.67 -1.3
600,914 - OLJFJH_03215 0.67 -0.6
600,924 - OLJFJH_03215 0.70 -0.6
600,952 - OLJFJH_03215 0.79 -2.4
600,992 - -0.3
601,060 - -0.7
601,060 - -0.4
601,226 + OLJFJH_03220 0.17 -1.0
601,238 + OLJFJH_03220 0.18 -0.1
601,239 - OLJFJH_03220 0.18 -0.4
601,239 - OLJFJH_03220 0.18 -0.5
601,239 - OLJFJH_03220 0.18 +0.1
601,242 + OLJFJH_03220 0.19 -0.6
601,375 - OLJFJH_03220 0.30 +0.2
601,376 + OLJFJH_03220 0.30 -0.3
601,376 + OLJFJH_03220 0.30 -0.9
601,376 + OLJFJH_03220 0.30 +0.3
601,376 + OLJFJH_03220 0.30 -0.5
601,376 + OLJFJH_03220 0.30 -0.1
601,376 + OLJFJH_03220 0.30 -0.7
601,376 + OLJFJH_03220 0.30 +0.0
601,376 + OLJFJH_03220 0.30 +0.3
601,376 + OLJFJH_03220 0.30 +0.1
601,376 + OLJFJH_03220 0.30 +0.1
601,377 - OLJFJH_03220 0.31 -0.2
601,377 - OLJFJH_03220 0.31 -0.3
601,377 - OLJFJH_03220 0.31 -0.4
601,377 - OLJFJH_03220 0.31 +0.6
601,413 - OLJFJH_03220 0.34 -0.6
601,441 + OLJFJH_03220 0.36 +2.0
601,567 - OLJFJH_03220 0.47 -0.1
601,567 - OLJFJH_03220 0.47 +0.4
601,664 + OLJFJH_03220 0.56 -0.1
601,865 - OLJFJH_03220 0.74 -0.1
601,995 + OLJFJH_03220 0.86 +0.7

Or see this region's nucleotide sequence